mRNA_H-akashiwo_Contig110.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig110.3.1
Unique NamemRNA_H-akashiwo_Contig110.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig110.3.1 vs. uniprot
Match: A0A7S3UU48_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU48_HETAK)

HSP 1 Score: 591 bits (1523), Expect = 5.910e-210
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 1 
Query:    1 LPQWRAWVPTVRWGFVLAPRLEAVVRLLPNPALVGLGALCANELTQRAVAQQIEQLPTESARAGAREVAAEALGNLGDRLDYLMQKGWQLDALFLKEMAQWEGGAPSPEAQAFLRRLAEAQMLQVAASFHLDENITSVLVANSTEARFQELQKVVPEEYKSRLLELGKLVKKIEGGKEPIGLDDVFSVFVEKEKLASTLLGFEEPAKLLKDLTETVEIFKTLEVEFSPEAISLTSTAAPERKVPITSFFEQLLEPVTTTLKDIEASVKQAVEQTLDDLVPLHYYEDAVPPSNAVSLEAWFAQLDALSRQ 927
            LPQWRAWVPTVRWGFVLAPRLEAVVRLLPNPALVGLGALCANELTQRAVAQQIEQLPTESARAGAREVAAEALGNLGDRLDYLMQKGWQLDALFLKEMAQWEGGAPSPEAQAFLRRLAEAQMLQVAASFHLDENITSVLVANSTEARFQELQKVVPEEYKSRLLELGKLVKKIEGGKEPIGLDDVFSVFVEKEKLASTLLGFEEPAKLLKDLTETVEIFKTLEVEFSPEAISLTSTAAPERKVPITSFFEQLLEPVTTTLKDIEASVKQAVEQTLDDLVPLHYYEDAVPPSNAVSLEAWFAQLDALSRQ
Sbjct:  154 LPQWRAWVPTVRWGFVLAPRLEAVVRLLPNPALVGLGALCANELTQRAVAQQIEQLPTESARAGAREVAAEALGNLGDRLDYLMQKGWQLDALFLKEMAQWEGGAPSPEAQAFLRRLAEAQMLQVAASFHLDENITSVLVANSTEARFQELQKVVPEEYKSRLLELGKLVKKIEGGKEPIGLDDVFSVFVEKEKLASTLLGFEEPAKLLKDLTETVEIFKTLEVEFSPEAISLTSTAAPERKVPITSFFEQLLEPVTTTLKDIEASVKQAVEQTLDDLVPLHYYEDAVPPSNAVSLEAWFAQLDALSRQ 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig110.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UU48_HETAK5.910e-210100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig110contigH-akashiwo_Contig110:297505..298577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size929
Hectar predicted targeting categorysignal peptide
Exons2
Cds size927
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387080.9343588-CDS-H-akashiwo_Contig110:297506..2984031681387080.9343588-CDS-H-akashiwo_Contig110:297506..298403Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig110 297507..298403 -
1681387080.9447381-CDS-H-akashiwo_Contig110:298547..2985771681387080.9447381-CDS-H-akashiwo_Contig110:298547..298577Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig110 298548..298577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig110.3.1prot_H-akashiwo_Contig110.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig110 297507..298577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig110.3.1

>prot_H-akashiwo_Contig110.3.1 ID=prot_H-akashiwo_Contig110.3.1|Name=mRNA_H-akashiwo_Contig110.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=309bp
LPQWRAWVPTVRWGFVLAPRLEAVVRLLPNPALVGLGALCANELTQRAVA
QQIEQLPTESARAGAREVAAEALGNLGDRLDYLMQKGWQLDALFLKEMAQ
WEGGAPSPEAQAFLRRLAEAQMLQVAASFHLDENITSVLVANSTEARFQE
LQKVVPEEYKSRLLELGKLVKKIEGGKEPIGLDDVFSVFVEKEKLASTLL
GFEEPAKLLKDLTETVEIFKTLEVEFSPEAISLTSTAAPERKVPITSFFE
QLLEPVTTTLKDIEASVKQAVEQTLDDLVPLHYYEDAVPPSNAVSLEAWF
AQLDALSRQ
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mRNA from alignment at H-akashiwo_Contig110:297505..298577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig110.3.1 ID=mRNA_H-akashiwo_Contig110.3.1|Name=mRNA_H-akashiwo_Contig110.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1073bp|location=Sequence derived from alignment at H-akashiwo_Contig110:297505..298577- (Heterosigma akashiwo CCMP452)
CTCCCACAGTGGCGTGCCTGGGTCCCCACGGTGCGTGTTTTCTTTTCTAC
TCCTGCCTATATGAAGATATATTGTTTTGTGCGGGTGGATTTAAACAATC
ATGGTTATTAATTTAATGTTATCAACTGTTCCTGGCATGCTGTAGATGTT
TAATGATTCGCACTCCACTCCTAGGTGCGTTGGGGCTTTGTTTTGGCCCC
GCGGCTGGAGGCCGTCGTCCGGCTGCTGCCCAACCCCGCCTTGGTTGGCC
TGGGCGCACTCTGCGCGAACGAACTCACGCAGCGCGCGGTGGCCCAGCAG
ATCGAGCAGCTGCCCACCGAGTCCGCGCGGGCGGGGGCGCGCGAGGTGGC
GGCCGAGGCCCTGGGGAACCTCGGCGACCGGCTGGACTACCTCATGCAGA
AGGGCTGGCAGCTGGACGCGCTCTTCCTGAAGGAGATGGCCCAGTGGGAG
GGCGGCGCGCCGTCCCCCGAGGCGCAGGCCTTCCTGCGCCGGCTGGCCGA
GGCGCAGATGCTGCAGGTCGCCGCCTCATTTCACCTCGACGAGAATATCA
CCAGCGTACTGGTGGCGAACTCGACCGAGGCCAGGTTCCAGGAACTGCAG
AAGGTTGTGCCGGAGGAGTACAAGTCCAGGTTGTTGGAGCTGGGCAAGCT
TGTTAAGAAAATCGAGGGTGGGAAAGAACCGATTGGCTTGGATGATGTTT
TCAGTGTGTTTGTGGAGAAAGAAAAGCTTGCTTCCACACTTCTGGGCTTT
GAAGAGCCCGCAAAACTTTTAAAGGACCTGACTGAGACTGTGGAAATTTT
CAAGACGCTTGAGGTGGAGTTTAGCCCGGAAGCTATCAGCCTGACCAGCA
CCGCTGCCCCCGAGCGGAAGGTGCCGATCACTTCCTTCTTCGAGCAGTTG
CTCGAGCCCGTCACCACCACCCTCAAAGACATCGAGGCCAGCGTGAAGCA
GGCGGTGGAGCAGACGCTGGACGACCTGGTGCCCCTGCACTACTACGAGG
ACGCGGTGCCGCCCTCCAACGCGGTCTCCCTGGAGGCCTGGTTCGCGCAG
CTGGACGCGCTCTCGCGGCAGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig110:297505..298577-

>mRNA_H-akashiwo_Contig110.3.1 ID=mRNA_H-akashiwo_Contig110.3.1|Name=mRNA_H-akashiwo_Contig110.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=927bp|location=Sequence derived from alignment at H-akashiwo_Contig110:297505..298577- (Heterosigma akashiwo CCMP452)
CTCCCACAGTGGCGTGCCTGGGTCCCCACGGTGCGTTGGGGCTTTGTTTT
GGCCCCGCGGCTGGAGGCCGTCGTCCGGCTGCTGCCCAACCCCGCCTTGG
TTGGCCTGGGCGCACTCTGCGCGAACGAACTCACGCAGCGCGCGGTGGCC
CAGCAGATCGAGCAGCTGCCCACCGAGTCCGCGCGGGCGGGGGCGCGCGA
GGTGGCGGCCGAGGCCCTGGGGAACCTCGGCGACCGGCTGGACTACCTCA
TGCAGAAGGGCTGGCAGCTGGACGCGCTCTTCCTGAAGGAGATGGCCCAG
TGGGAGGGCGGCGCGCCGTCCCCCGAGGCGCAGGCCTTCCTGCGCCGGCT
GGCCGAGGCGCAGATGCTGCAGGTCGCCGCCTCATTTCACCTCGACGAGA
ATATCACCAGCGTACTGGTGGCGAACTCGACCGAGGCCAGGTTCCAGGAA
CTGCAGAAGGTTGTGCCGGAGGAGTACAAGTCCAGGTTGTTGGAGCTGGG
CAAGCTTGTTAAGAAAATCGAGGGTGGGAAAGAACCGATTGGCTTGGATG
ATGTTTTCAGTGTGTTTGTGGAGAAAGAAAAGCTTGCTTCCACACTTCTG
GGCTTTGAAGAGCCCGCAAAACTTTTAAAGGACCTGACTGAGACTGTGGA
AATTTTCAAGACGCTTGAGGTGGAGTTTAGCCCGGAAGCTATCAGCCTGA
CCAGCACCGCTGCCCCCGAGCGGAAGGTGCCGATCACTTCCTTCTTCGAG
CAGTTGCTCGAGCCCGTCACCACCACCCTCAAAGACATCGAGGCCAGCGT
GAAGCAGGCGGTGGAGCAGACGCTGGACGACCTGGTGCCCCTGCACTACT
ACGAGGACGCGGTGCCGCCCTCCAACGCGGTCTCCCTGGAGGCCTGGTTC
GCGCAGCTGGACGCGCTCTCGCGGCAG
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