mRNA_H-akashiwo_Contig110.29.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: A0A6V1P7M0_HETAK (Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7M0_HETAK) HSP 1 Score: 231 bits (589), Expect = 2.240e-76 Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 1
Query: 1 MAGKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA 360
MAGKAGRGKKSQT+SSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA
Sbjct: 27 MAGKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA 146
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: A0A7S3UYM8_HETAK (Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM8_HETAK) HSP 1 Score: 212 bits (539), Expect = 1.540e-68 Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 1
Query: 4 AGKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKT 351
A GRGKKSQ+KSSKAGLQFPVGRIGRYLK GRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRI+PRHLQLAVRNDEELNKLLGGVTI+QGGVLPNIHTVLLPKK+
Sbjct: 34 AAAGGRGKKSQSKSSKAGLQFPVGRIGRYLKNGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTISQGGVLPNIHTVLLPKKS 149
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: A0A7S2V3S5_9STRA (Histone H2A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3S5_9STRA) HSP 1 Score: 198 bits (504), Expect = 7.890e-64 Identity = 98/110 (89.09%), Postives = 107/110 (97.27%), Query Frame = 1
Query: 25 KKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTK 354
KKS TKS+KAGLQFPVGRIGR+LK+GRY+ RVGAGAPVY+AAVLEYLCAEILELAGNAARDNKK+RI+PRHLQLA+RNDEELNKLLGGVTI+QGGVLPNIH VLLPKKTK
Sbjct: 7 KKSVTKSTKAGLQFPVGRIGRFLKKGRYAPRVGAGAPVYMAAVLEYLCAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPNIHAVLLPKKTK 116
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 196 bits (497), Expect = 1.080e-62 Identity = 97/115 (84.35%), Postives = 108/115 (93.91%), Query Frame = 1
Query: 7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKT 351
GK GRGKKS T+S+KAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK RI+PRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKKT
Sbjct: 5 GKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 119
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA) HSP 1 Score: 196 bits (498), Expect = 1.120e-62 Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 1
Query: 7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKK 348
GK GRGKKS T S+KAGLQFPVGRIGRYLKQG+++ R+GAGAPVYLAAVLEYLCAEILELAGNAARDNKK+RI PRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH+VLLPKK
Sbjct: 5 GKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPKK 118
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 195 bits (495), Expect = 2.740e-62 Identity = 102/121 (84.30%), Postives = 109/121 (90.08%), Query Frame = 1
Query: 7 GKAGRG---KKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA 360
GK GRG KKS +KSSKAGLQFPV R+GR+LK GRY+ RVGAGAPVYLAAVLEYLCAEILELAGNAARDNKK+RIVPRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKKT +A
Sbjct: 5 GKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASA 125
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: A0A7R9YCM0_9STRA (Histone H2A n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCM0_9STRA) HSP 1 Score: 195 bits (496), Expect = 2.750e-62 Identity = 96/110 (87.27%), Postives = 105/110 (95.45%), Query Frame = 1
Query: 28 KSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKT 357
KS T+SSKAGLQFPVGR+GRYLKQGRY R+G+GAPVYLAAVLEYLCAEILELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIAQGGVLPNIH VLLPKK+K+
Sbjct: 22 KSMTRSSKAGLQFPVGRVGRYLKQGRYCDRIGSGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGNVTIAQGGVLPNIHNVLLPKKSKS 131
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 194 bits (493), Expect = 4.400e-62 Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 1
Query: 7 GKAGRG-KKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKT 351
GK GRG KKS T S+KAGLQFPVGRIGRYL+QG+Y+ R+GAGAPVYLAAVLEYLCAEILELAGNAARDNKK+RIVPRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH VLLPKK+
Sbjct: 5 GKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKS 120
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 196 bits (497), Expect = 6.220e-62 Identity = 97/115 (84.35%), Postives = 108/115 (93.91%), Query Frame = 1
Query: 7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKT 351
GK GRGKKS T+S+KAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK RI+PRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKKT
Sbjct: 50 GKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 164
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 194 bits (493), Expect = 6.700e-62 Identity = 98/115 (85.22%), Postives = 106/115 (92.17%), Query Frame = 1
Query: 7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKT 351
GK GRGKKS +KSSKAGLQFPV RIGRYLK+G+Y+ RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK RI+PRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKK+
Sbjct: 5 GKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig110.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig110.29.1 >prot_H-akashiwo_Contig110.29.1 ID=prot_H-akashiwo_Contig110.29.1|Name=mRNA_H-akashiwo_Contig110.29.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=121bp MAGKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAback to top mRNA from alignment at H-akashiwo_Contig110:1263421..1263783- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig110.29.1 ID=mRNA_H-akashiwo_Contig110.29.1|Name=mRNA_H-akashiwo_Contig110.29.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=363bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1263421..1263783- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig110:1263421..1263783- >mRNA_H-akashiwo_Contig110.29.1 ID=mRNA_H-akashiwo_Contig110.29.1|Name=mRNA_H-akashiwo_Contig110.29.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=363bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1263421..1263783- (Heterosigma akashiwo CCMP452)back to top |