mRNA_H-akashiwo_Contig110.28.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig110.28.1
Unique NamemRNA_H-akashiwo_Contig110.28.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 201 bits (510), Expect = 7.300e-65
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    4 TTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            T+ MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   20 TSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: A0A6P3GRU7_BISBI (Histone H4 n=2 Tax=Metazoa TaxID=33208 RepID=A0A6P3GRU7_BISBI)

HSP 1 Score: 200 bits (508), Expect = 9.080e-65
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    4 TTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            T TMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    5 TATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110
[Close]
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: A0A452ZB17_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZB17_AEGTS)

HSP 1 Score: 200 bits (509), Expect = 1.070e-64
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 STTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            S+ TMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   20 SSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126
[Close]
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: L8IRE4_9CETA (Histone H4 n=1 Tax=Bos mutus TaxID=72004 RepID=L8IRE4_9CETA)

HSP 1 Score: 200 bits (508), Expect = 1.380e-64
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    4 TTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            T TMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   18 TATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 123
[Close]
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: UPI001658CF9B (histone H4-like n=1 Tax=Halichoerus grypus TaxID=9711 RepID=UPI001658CF9B)

HSP 1 Score: 200 bits (508), Expect = 1.430e-64
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    4 TTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            TT MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   19 TTVMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 124
[Close]
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: K7F0E3_PELSI (Histone H4 n=4 Tax=Amniota TaxID=32524 RepID=K7F0E3_PELSI)

HSP 1 Score: 199 bits (506), Expect = 1.670e-64
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:    1 STTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            S  TMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 SAVTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 107
[Close]
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: A0A1E1X0M3_9ACAR (Histone H4 (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A1E1X0M3_9ACAR)

HSP 1 Score: 199 bits (506), Expect = 1.670e-64
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:    1 STTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            S  TMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 SVVTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 107
[Close]
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: A0A453MXZ5_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MXZ5_AEGTS)

HSP 1 Score: 200 bits (508), Expect = 1.730e-64
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 STTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            S +TMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   24 SPSTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 130
[Close]
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: A0A7S4DKQ9_9EUKA (Histone H4 n=4 Tax=Chlorarachniophyceae TaxID=29197 RepID=A0A7S4DKQ9_9EUKA)

HSP 1 Score: 199 bits (506), Expect = 2.150e-64
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    4 TTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            T TMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE+VIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   10 TATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLESVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 115
[Close]
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Match: R0KA81_ANAPL (Histone H4 (Fragment) n=4 Tax=Euteleostomi TaxID=117571 RepID=R0KA81_ANAPL)

HSP 1 Score: 199 bits (505), Expect = 2.370e-64
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 STTTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            S+ TMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 SSGTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig110.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3L6V663_9STRA7.300e-6598.11Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A6P3GRU7_BISBI9.080e-6597.17Histone H4 n=2 Tax=Metazoa TaxID=33208 RepID=A0A6P... [more]
A0A452ZB17_AEGTS1.070e-6496.26Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
L8IRE4_9CETA1.380e-6497.17Histone H4 n=1 Tax=Bos mutus TaxID=72004 RepID=L8I... [more]
UPI001658CF9B1.430e-6497.17histone H4-like n=1 Tax=Halichoerus grypus TaxID=9... [more]
K7F0E3_PELSI1.670e-6496.26Histone H4 n=4 Tax=Amniota TaxID=32524 RepID=K7F0E... [more]
A0A1E1X0M3_9ACAR1.670e-6496.26Histone H4 (Fragment) n=2 Tax=Bilateria TaxID=3321... [more]
A0A453MXZ5_AEGTS1.730e-6496.26Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A7S4DKQ9_9EUKA2.150e-6497.17Histone H4 n=4 Tax=Chlorarachniophyceae TaxID=2919... [more]
R0KA81_ANAPL2.370e-6496.26Histone H4 (Fragment) n=4 Tax=Euteleostomi TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig110contigH-akashiwo_Contig110:1260859..1261182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008863623.1
PFAMsCENP-T_C
Model size324
Max annot lvl2759|Eukaryota
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.68e-64
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size312
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387081.8964014-UTR-H-akashiwo_Contig110:1260858..12608701681387081.8964014-UTR-H-akashiwo_Contig110:1260858..1260870Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig110 1260859..1260870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387081.9106112-CDS-H-akashiwo_Contig110:1260870..12611821681387081.9106112-CDS-H-akashiwo_Contig110:1260870..1261182Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig110 1260871..1261182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig110.28.1prot_H-akashiwo_Contig110.28.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig110 1260871..1261182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig110.28.1

>prot_H-akashiwo_Contig110.28.1 ID=prot_H-akashiwo_Contig110.28.1|Name=mRNA_H-akashiwo_Contig110.28.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at H-akashiwo_Contig110:1260859..1261182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig110.28.1 ID=mRNA_H-akashiwo_Contig110.28.1|Name=mRNA_H-akashiwo_Contig110.28.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=324bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1260859..1261182+ (Heterosigma akashiwo CCMP452)
TCAACAACAACCATGTCTGGAAGAGGAAAAGGAGGTAAAGGTCTCGGCAA
GGGTGGCGCTAAGCGCCATCGTAAGGTCCTTCGTGATAACATCCAGGGTA
TCACCAAGCCTGCTATCCGCCGTCTGGCAAGACGTGGTGGCGTCAAGCGC
ATCTCTGGCCTCATCTACGAGGAGACCCGTGGTGTCCTCAAGGTGTTCCT
TGAGAATGTGATCCGTGACTCTGTGACCTACACAGAGCATGCTCGCAGAA
AGACCGTCACTGCCATGGACGTGGTTTACGCCCTGAAAAGACAGGGCCGC
ACCCTCTACGGCTTCGGTGGTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig110:1260859..1261182+

>mRNA_H-akashiwo_Contig110.28.1 ID=mRNA_H-akashiwo_Contig110.28.1|Name=mRNA_H-akashiwo_Contig110.28.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=312bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1260859..1261182+ (Heterosigma akashiwo CCMP452)
ATGTCTGGAAGAGGAAAAGGAGGTAAAGGTCTCGGCAAGGGTGGCGCTAA
GCGCCATCGTAAGGTCCTTCGTGATAACATCCAGGGTATCACCAAGCCTG
CTATCCGCCGTCTGGCAAGACGTGGTGGCGTCAAGCGCATCTCTGGCCTC
ATCTACGAGGAGACCCGTGGTGTCCTCAAGGTGTTCCTTGAGAATGTGAT
CCGTGACTCTGTGACCTACACAGAGCATGCTCGCAGAAAGACCGTCACTG
CCATGGACGTGGTTTACGCCCTGAAAAGACAGGGCCGCACCCTCTACGGC
TTCGGTGGTTAA
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