mRNA_H-akashiwo_Contig110.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig110.18.1
Unique NamemRNA_H-akashiwo_Contig110.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig110.18.1 vs. uniprot
Match: A0A7S3Y2F7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2F7_HETAK)

HSP 1 Score: 124 bits (312), Expect = 2.170e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 3 
Query:  402 VWVASPDRGVGEALGKEEGFKPAPLGRRFSRRLAKLDRQKEIEKARVERQELEAKQAREDLLLQREALAAA 614
            VW ASPD+GVGEALGKE+GFKPAPLGRRFSRRLAKLDRQKEIEKARVERQELEAKQAREDLLLQREALAAA
Sbjct:   12 VWAASPDQGVGEALGKEDGFKPAPLGRRFSRRLAKLDRQKEIEKARVERQELEAKQAREDLLLQREALAAA 82
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BLAST of mRNA_H-akashiwo_Contig110.18.1 vs. uniprot
Match: A0A7S3Y6Q7_HETAK (Hypothetical protein (Fragment) n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6Q7_HETAK)

HSP 1 Score: 101 bits (252), Expect = 2.420e-21
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 3 
Query:  399 GVWVASPDRGVGEALGKEEGFKPAPLGRRFSRRLAKLDRQKEIEKARVERQELEAKQAREDL 584
            GVWVA PDRGVG AL KEEGFKPAPLGRR SRRLAKLDRQKE EKAR+E+QELEAKQAREDL
Sbjct:  403 GVWVAFPDRGVGGALEKEEGFKPAPLGRRSSRRLAKLDRQKETEKARLEQQELEAKQAREDL 464
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BLAST of mRNA_H-akashiwo_Contig110.18.1 vs. uniprot
Match: A0A7S3XRS0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRS0_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 6.280e-16
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:  405 WVASPDRGVGEALGKEEGFKPAPLGRRFSRRLAKLDRQKEIEKARVERQELEAKQAREDLLLQREALA 608
            WVAS D GVGE  G+ EGF+PAP+GRR SR+LAK D+Q+  E AR+E  ELEA QA+EDL LQREALA
Sbjct:   84 WVASSDEGVGEVKGEGEGFEPAPIGRRASRQLAKHDKQRHTETARLEHLELEALQAKEDLALQREALA 151
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BLAST of mRNA_H-akashiwo_Contig110.18.1 vs. uniprot
Match: A0A7S4D5W2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5W2_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 1.560e-15
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 3 
Query:  405 WVASPDRGVGEALGKEEGFKPAPLGRRFSRRLAKLDRQKEIEKARVERQELEAKQAREDLLLQREALAAAA 617
            WV S + GVGE  G  +GFKPAPLG+R  RRLAK +RQ+E E AR+E+Q+LEA++AREDL LQREALAAAA
Sbjct:  134 WVESSEGGVGEEKGGADGFKPAPLGKRACRRLAKSNRQRETETARLEQQKLEAQRAREDLALQREALAAAA 204
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BLAST of mRNA_H-akashiwo_Contig110.18.1 vs. uniprot
Match: A0A7S3XZR1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZR1_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 6.720e-11
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 3 
Query:  405 WVASPDRGVGEALGKEEGFKPAPLGRRFSRRLAKLDRQKEIEKARVERQELEAKQAREDLLLQREALAAAA 617
            W AS D  VGE  G++EGF+PAPLGRR  RRLAK D+Q+E E AR+E Q  E ++A +DL LQR+ LA AA
Sbjct:   15 WEAS-DCSVGEIKGEDEGFEPAPLGRRACRRLAKRDKQRETESARLECQAREEQRATKDLALQRDVLARAA 84
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BLAST of mRNA_H-akashiwo_Contig110.18.1 vs. uniprot
Match: A0A7S3XZM2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZM2_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 5.870e-10
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 3 
Query:  405 WVASPDRGVGEALGKEEGFKPAPLGRRFSRRLAKLDRQKEIEKARVERQELEAKQAREDLLLQREALAAAA 617
            W AS D  VGE  G++EGF+PAPLGRR  RRLAK D+Q+E E AR+E Q  E ++A +DL LQR+ LA AA
Sbjct:  120 WEAS-DCSVGEIKGEDEGFEPAPLGRRACRRLAKRDKQRETESARLECQAREEQRATKDLALQRDVLARAA 189
[Close]
BLAST of mRNA_H-akashiwo_Contig110.18.1 vs. uniprot
Match: A0A7S3Y710_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y710_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 2.370e-6
Identity = 40/56 (71.43%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:    2 EAVAVADASVELVTLVSTGGKQFSS-SF*CAGIRRSGGEQSSVEGVIALMLHSALA 166
            EAVAVADASVELVTLVSTGGK      F         GEQSSV GVIALMLHSALA
Sbjct:  269 EAVAVADASVELVTLVSTGGKAILRVHFDAQEYGGLEGEQSSVGGVIALMLHSALA 324
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig110.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S3Y2F7_HETAK2.170e-3195.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6Q7_HETAK2.420e-2188.71Hypothetical protein (Fragment) n=5 Tax=Heterosigm... [more]
A0A7S3XRS0_HETAK6.280e-1667.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D5W2_HETAK1.560e-1567.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XZR1_HETAK6.720e-1159.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XZM2_HETAK5.870e-1059.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y710_HETAK2.370e-671.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig110contigH-akashiwo_Contig110:682151..682842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size692
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387081.0854564-UTR-H-akashiwo_Contig110:682150..6822951681387081.0854564-UTR-H-akashiwo_Contig110:682150..682295Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig110 682151..682295 +
1681387081.1038308-UTR-H-akashiwo_Contig110:682679..6828421681387081.1038308-UTR-H-akashiwo_Contig110:682679..682842Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig110 682680..682842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387081.09462-CDS-H-akashiwo_Contig110:682295..6826791681387081.09462-CDS-H-akashiwo_Contig110:682295..682679Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig110 682296..682679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig110.18.1prot_H-akashiwo_Contig110.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig110 682296..682679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig110.18.1

>prot_H-akashiwo_Contig110.18.1 ID=prot_H-akashiwo_Contig110.18.1|Name=mRNA_H-akashiwo_Contig110.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=128bp
MLHSALAAAAGADDGAAAPPPPHSSGCTTALLAPQQESESQSSQLEEGCT
SSETESSSGGEDESTSSSSEESLSEGNRVEIQPSGCMGRFSRPGSRRSAG
ERRGVQASTFGKEVQPSTCETGQAERN*
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mRNA from alignment at H-akashiwo_Contig110:682151..682842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig110.18.1 ID=mRNA_H-akashiwo_Contig110.18.1|Name=mRNA_H-akashiwo_Contig110.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=692bp|location=Sequence derived from alignment at H-akashiwo_Contig110:682151..682842+ (Heterosigma akashiwo CCMP452)
GGAGGCTGTTGCAGTTGCTGACGCATCAGTTGAGCTTGTGACCTTGGTCT
CAACGGGGGGAAAGCAATTCTCGAGTTCATTTTGATGCGCAGGAATCCGG
AGGTCTGGAGGGGAGCAGAGCAGCGTGGAAGGCGTCATCGCGCTCATGCT
GCACTCAGCGCTTGCTGCTGCTGCTGGTGCAGATGATGGTGCAGCTGCTC
CTCCTCCTCCTCATAGTTCTGGTTGCACGACGGCGCTGTTGGCACCACAA
CAAGAATCTGAATCGCAGTCTAGTCAATTGGAGGAGGGATGCACTTCTTC
GGAGACGGAGTCGTCAAGCGGTGGTGAGGATGAATCGACTTCAAGTAGCT
CGGAGGAGAGCTTAAGCGAAGGTAACAGGGTGGAGATTCAGCCAAGCGGG
TGTATGGGTCGCTTCTCCAGACCGGGGAGTCGGAGAAGCGCTGGGGAAAG
AAGAGGGGTTCAAGCCAGCACCTTTGGGAAGGAGGTTCAGCCGTCGACTT
GCGAAACTGGACAGGCAGAAAGAAATTGAAAAGGCGAGGGTGGAGAGGCA
GGAGCTAGAGGCGAAGCAGGCCAGGGAAGACCTGTTGCTCCAGCGGGAAG
CATTGGCTGCAGCTGCCGGGCGCGCCATAAGGAAGCGGAGGCCAAGGGGC
CGGAGGGCGAGGGGAGGGCAGCTTGCAGGTCGAGGCAGGGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig110:682151..682842+

>mRNA_H-akashiwo_Contig110.18.1 ID=mRNA_H-akashiwo_Contig110.18.1|Name=mRNA_H-akashiwo_Contig110.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=384bp|location=Sequence derived from alignment at H-akashiwo_Contig110:682151..682842+ (Heterosigma akashiwo CCMP452)
ATGCTGCACTCAGCGCTTGCTGCTGCTGCTGGTGCAGATGATGGTGCAGC
TGCTCCTCCTCCTCCTCATAGTTCTGGTTGCACGACGGCGCTGTTGGCAC
CACAACAAGAATCTGAATCGCAGTCTAGTCAATTGGAGGAGGGATGCACT
TCTTCGGAGACGGAGTCGTCAAGCGGTGGTGAGGATGAATCGACTTCAAG
TAGCTCGGAGGAGAGCTTAAGCGAAGGTAACAGGGTGGAGATTCAGCCAA
GCGGGTGTATGGGTCGCTTCTCCAGACCGGGGAGTCGGAGAAGCGCTGGG
GAAAGAAGAGGGGTTCAAGCCAGCACCTTTGGGAAGGAGGTTCAGCCGTC
GACTTGCGAAACTGGACAGGCAGAAAGAAATTGA
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