mRNA_H-akashiwo_Contig110.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig110.16.1
Unique NamemRNA_H-akashiwo_Contig110.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig110.16.1 vs. uniprot
Match: A0A7S3Y6D3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6D3_HETAK)

HSP 1 Score: 643 bits (1658), Expect = 3.790e-230
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 1 
Query:    1 QGLHTYKGKKLPSPFQAVQRAQGKACFVLSLKLLQHMWFGGKMFFLRLWGALALISFCVCPSGVRGYSKLPSNAGSGLLFQSSGYFSLGNTRSEPLLMMPEEASTSRKQLGRKETKTSATVEMAIDPASNSLPFPDLDLMRMYGTFEPAPKKKEAQHKECNSSGDTSLMRMYGGEQVVKHLRHSPDAGFEEKPTPVSSYLTGLNPPKKDQAVAPPKPSLASSKAISIDSLQRSAVDKDIAKEISREIVSGAKLTRDKVVSGAAGIKAGADGVREEIVSDLVYLQETASLLSWRAQTALNSMTSATAEQAQMAIGATTEKLRAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAPGPAVANLGDLDEEQES 1161
            QGLHTYKGKKLPSPFQAVQRAQGKACFVLSLKLLQHMWFGGKMFFLRLWGALALISFCVCPSGVRGYSKLPSNAGSGLLFQSSGYFSLGNTRSEPLLMMPEEASTSRKQLGRKETKTSATVEMAIDPASNSLPFPDLDLMRMYGTFEPAPKKKEAQHKECNSSGDTSLMRMYGGEQVVKHLRHSPDAGFEEKPTPVSSYLTGLNPPKKDQAVAPPKPSLASSKAISIDSLQRSAVDKDIAKEISREIVSGAKLTRDKVVSGAAGIKAGADGVREEIVSDLVYLQETASLLSWRAQTALNSMTSATAEQAQMAIGATTEKLRAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAPGPAVANLGDLDEEQES
Sbjct:    3 QGLHTYKGKKLPSPFQAVQRAQGKACFVLSLKLLQHMWFGGKMFFLRLWGALALISFCVCPSGVRGYSKLPSNAGSGLLFQSSGYFSLGNTRSEPLLMMPEEASTSRKQLGRKETKTSATVEMAIDPASNSLPFPDLDLMRMYGTFEPAPKKKEAQHKECNSSGDTSLMRMYGGEQVVKHLRHSPDAGFEEKPTPVSSYLTGLNPPKKDQAVAPPKPSLASSKAISIDSLQRSAVDKDIAKEISREIVSGAKLTRDKVVSGAAGIKAGADGVREEIVSDLVYLQETASLLSWRAQTALNSMTSATAEQAQMAIGATTEKLRAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAPGPAVANLGDLDEEQES 389
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig110.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y6D3_HETAK3.790e-230100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig110contigH-akashiwo_Contig110:665322..666482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1163
Hectar predicted targeting categoryother localisation
Exons1
Cds size1161
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387081.049802-CDS-H-akashiwo_Contig110:665321..6664821681387081.049802-CDS-H-akashiwo_Contig110:665321..666482Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig110 665322..666482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig110.16.1prot_H-akashiwo_Contig110.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig110 665322..666482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig110.16.1

>prot_H-akashiwo_Contig110.16.1 ID=prot_H-akashiwo_Contig110.16.1|Name=mRNA_H-akashiwo_Contig110.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=387bp
QGLHTYKGKKLPSPFQAVQRAQGKACFVLSLKLLQHMWFGGKMFFLRLWG
ALALISFCVCPSGVRGYSKLPSNAGSGLLFQSSGYFSLGNTRSEPLLMMP
EEASTSRKQLGRKETKTSATVEMAIDPASNSLPFPDLDLMRMYGTFEPAP
KKKEAQHKECNSSGDTSLMRMYGGEQVVKHLRHSPDAGFEEKPTPVSSYL
TGLNPPKKDQAVAPPKPSLASSKAISIDSLQRSAVDKDIAKEISREIVSG
AKLTRDKVVSGAAGIKAGADGVREEIVSDLVYLQETASLLSWRAQTALNS
MTSATAEQAQMAIGATTEKLRAATAVPKAPARTAAPEPTAEAAAGAPTAA
VASPTPAAAAAIPKAAALKAPGPAVANLGDLDEEQES
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mRNA from alignment at H-akashiwo_Contig110:665322..666482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig110.16.1 ID=mRNA_H-akashiwo_Contig110.16.1|Name=mRNA_H-akashiwo_Contig110.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1161bp|location=Sequence derived from alignment at H-akashiwo_Contig110:665322..666482+ (Heterosigma akashiwo CCMP452)
CAAGGGCTACATACGTATAAAGGGAAAAAGTTGCCTAGCCCTTTTCAAGC
TGTCCAGCGCGCGCAGGGCAAGGCTTGCTTTGTCCTGTCCTTGAAGCTCC
TGCAGCACATGTGGTTTGGGGGGAAGATGTTCTTTCTTCGGCTTTGGGGG
GCGCTTGCGTTGATTAGCTTTTGCGTGTGTCCGTCTGGTGTCCGGGGATA
CTCGAAGCTGCCTTCAAATGCTGGGAGTGGTCTCTTGTTCCAGTCTTCAG
GCTACTTTAGCCTGGGAAACACGCGGTCCGAGCCGCTGCTTATGATGCCG
GAAGAAGCCAGCACAAGCCGCAAACAACTGGGTAGAAAAGAAACCAAGAC
CTCCGCAACGGTCGAGATGGCGATTGATCCGGCATCGAACAGTCTCCCTT
TTCCTGACTTAGATCTTATGCGTATGTATGGCACATTTGAACCTGCACCT
AAAAAAAAGGAGGCCCAGCACAAAGAGTGCAACTCCTCTGGGGACACAAG
TTTGATGCGAATGTACGGAGGAGAGCAAGTGGTCAAGCACCTCCGCCACT
CACCAGATGCAGGCTTTGAAGAAAAACCAACCCCTGTTTCTTCCTACCTT
ACTGGCCTGAACCCACCCAAGAAAGATCAGGCAGTTGCGCCACCAAAACC
TTCTTTGGCCAGTTCAAAAGCAATATCCATTGACTCCCTCCAGAGGTCTG
CCGTGGACAAAGACATTGCAAAGGAGATTTCAAGGGAAATAGTTTCCGGA
GCCAAACTGACCAGGGATAAGGTTGTCTCAGGGGCGGCTGGAATCAAAGC
GGGGGCGGATGGGGTGAGGGAGGAGATTGTTTCAGATCTGGTGTACCTCC
AGGAGACTGCATCTTTATTGTCCTGGCGAGCCCAAACTGCCCTCAATAGC
ATGACCTCCGCTACCGCTGAGCAAGCCCAAATGGCCATCGGGGCGACCAC
TGAAAAGCTGCGCGCAGCCACCGCCGTACCCAAGGCACCTGCACGCACTG
CAGCGCCTGAGCCCACGGCTGAGGCCGCAGCGGGCGCCCCCACGGCCGCG
GTGGCATCTCCCACGCCCGCCGCCGCGGCGGCCATTCCCAAGGCGGCCGC
CCTGAAGGCGCCGGGGCCGGCGGTGGCGAACCTGGGGGACCTGGACGAGG
AGCAGGAGTCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig110:665322..666482+

>mRNA_H-akashiwo_Contig110.16.1 ID=mRNA_H-akashiwo_Contig110.16.1|Name=mRNA_H-akashiwo_Contig110.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1161bp|location=Sequence derived from alignment at H-akashiwo_Contig110:665322..666482+ (Heterosigma akashiwo CCMP452)
CAAGGGCTACATACGTATAAAGGGAAAAAGTTGCCTAGCCCTTTTCAAGC
TGTCCAGCGCGCGCAGGGCAAGGCTTGCTTTGTCCTGTCCTTGAAGCTCC
TGCAGCACATGTGGTTTGGGGGGAAGATGTTCTTTCTTCGGCTTTGGGGG
GCGCTTGCGTTGATTAGCTTTTGCGTGTGTCCGTCTGGTGTCCGGGGATA
CTCGAAGCTGCCTTCAAATGCTGGGAGTGGTCTCTTGTTCCAGTCTTCAG
GCTACTTTAGCCTGGGAAACACGCGGTCCGAGCCGCTGCTTATGATGCCG
GAAGAAGCCAGCACAAGCCGCAAACAACTGGGTAGAAAAGAAACCAAGAC
CTCCGCAACGGTCGAGATGGCGATTGATCCGGCATCGAACAGTCTCCCTT
TTCCTGACTTAGATCTTATGCGTATGTATGGCACATTTGAACCTGCACCT
AAAAAAAAGGAGGCCCAGCACAAAGAGTGCAACTCCTCTGGGGACACAAG
TTTGATGCGAATGTACGGAGGAGAGCAAGTGGTCAAGCACCTCCGCCACT
CACCAGATGCAGGCTTTGAAGAAAAACCAACCCCTGTTTCTTCCTACCTT
ACTGGCCTGAACCCACCCAAGAAAGATCAGGCAGTTGCGCCACCAAAACC
TTCTTTGGCCAGTTCAAAAGCAATATCCATTGACTCCCTCCAGAGGTCTG
CCGTGGACAAAGACATTGCAAAGGAGATTTCAAGGGAAATAGTTTCCGGA
GCCAAACTGACCAGGGATAAGGTTGTCTCAGGGGCGGCTGGAATCAAAGC
GGGGGCGGATGGGGTGAGGGAGGAGATTGTTTCAGATCTGGTGTACCTCC
AGGAGACTGCATCTTTATTGTCCTGGCGAGCCCAAACTGCCCTCAATAGC
ATGACCTCCGCTACCGCTGAGCAAGCCCAAATGGCCATCGGGGCGACCAC
TGAAAAGCTGCGCGCAGCCACCGCCGTACCCAAGGCACCTGCACGCACTG
CAGCGCCTGAGCCCACGGCTGAGGCCGCAGCGGGCGCCCCCACGGCCGCG
GTGGCATCTCCCACGCCCGCCGCCGCGGCGGCCATTCCCAAGGCGGCCGC
CCTGAAGGCGCCGGGGCCGGCGGTGGCGAACCTGGGGGACCTGGACGAGG
AGCAGGAGTCC
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