mRNA_H-akashiwo_Contig11.97.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.97.1
Unique NamemRNA_H-akashiwo_Contig11.97.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig11.97.1 vs. uniprot
Match: A0A7S3YF33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF33_HETAK)

HSP 1 Score: 320 bits (821), Expect = 6.580e-109
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 2 
Query:    2 GGKKAPCCVVVDVDCPATFRELSEVLSRAGFEPVDVPPRDDARRGTAVAAEAEGAAPLLWVAQRETSAHTADHVCGLVEAGRVPGERLCALLDGPEGPGSPPLRRAEELAGCRIEYVCAAHIYDSVFSNIRVWLRDGYSPAKIQTFLDQTWNREL 466
            GGKKAPCCVVVDVDCPATFRELSEVLSRAGFEPVDVPPRDDARRGTAVAAEAEGAAPLLWVAQRETSAHTADHVCGLVEAGRVPGERLCALLDGPEGPGSPPLRRAEELAGCRIEYVCAAHIYDSVFSNIRVWLRDGYSPAKIQTFLDQTWNREL
Sbjct:   22 GGKKAPCCVVVDVDCPATFRELSEVLSRAGFEPVDVPPRDDARRGTAVAAEAEGAAPLLWVAQRETSAHTADHVCGLVEAGRVPGERLCALLDGPEGPGSPPLRRAEELAGCRIEYVCAAHIYDSVFSNIRVWLRDGYSPAKIQTFLDQTWNREL 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YF33_HETAK6.580e-109100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:4367790..4371637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size780
Hectar predicted targeting categoryother localisation
Exons4
Cds size720
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.5517209-UTR-H-akashiwo_Contig11:4367789..43678471681387076.5517209-UTR-H-akashiwo_Contig11:4367789..4367847Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 4367790..4367847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.5600467-CDS-H-akashiwo_Contig11:4367847..43682421681387076.5600467-CDS-H-akashiwo_Contig11:4367847..4368242Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4367848..4368242 -
1681387076.5775912-CDS-H-akashiwo_Contig11:4370881..43709741681387076.5775912-CDS-H-akashiwo_Contig11:4370881..4370974Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4370882..4370974 -
1681387076.5898254-CDS-H-akashiwo_Contig11:4371239..43713981681387076.5898254-CDS-H-akashiwo_Contig11:4371239..4371398Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4371240..4371398 -
1681387076.5993676-CDS-H-akashiwo_Contig11:4371564..43716371681387076.5993676-CDS-H-akashiwo_Contig11:4371564..4371637Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4371565..4371637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.97.1prot_H-akashiwo_Contig11.97.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 4367848..4371637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.97.1

>prot_H-akashiwo_Contig11.97.1 ID=prot_H-akashiwo_Contig11.97.1|Name=mRNA_H-akashiwo_Contig11.97.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=240bp
GRQEGAVLRGCGRGLPRDLPRAVRGALPGRLRARGCAPPGRRAAGYGGGG
GGRGGRAAAVGGAAGDERPHRRPRLRPRGGGAGPRRAAVRAAGRARGAGE
PPAAPSRGAGRLPDRVRVRGPHLRQRVQQHPRVAARRLLPRQDSDVPGPD
MEPGAVSRRGGVIHAAPTAAAWGRLTRTDSRHLSVVLVNGNITAVSTNKS
WVDPFLLVPHVYLALLCCWLGGWMIEDADRWAGSCCCYV*
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mRNA from alignment at H-akashiwo_Contig11:4367790..4371637-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.97.1 ID=mRNA_H-akashiwo_Contig11.97.1|Name=mRNA_H-akashiwo_Contig11.97.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3848bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4367790..4371637- (Heterosigma akashiwo CCMP452)
GGGCGGCAAGAAGGCGCCGTGCTGCGTGGTTGTGGACGTGGACTGCCCCG
CGACCTTCCGCGAGCTGTCCGAGGTCGCGCCCCCCCCCCCCCCCCGCCTG
CTGCCCTCAAACGCCCCTCTCACCCCCCTCCCCGCCCCGCCCGCCCGGCC
CAGCACCTTCCCCTCCTGGACGACGCGCCCTTCCTTGCCGCCGCCGCCGC
CAAGCTCGTGCTCGTGCCCCCTCCCCCCCCCCCTGACAGGTGCTCTCCCG
GGCCGGCTTCGAGCCCGTGGATGTGCCCCCCCGGGACGACGCGCGGCGGG
GTACGGCGGTGGCGGCGGAGGCCGAGGGGGCCGCGCCGCTGCTGTGGGTG
GCGCAGCGGGAGACGAGCGCCCACACCGCCGACCACGTCTGCGGCCTCGT
GAGCACAGCATATACAGACCAGCGCAAGATGTTTTGGTACCGTCGTCTGA
TGTTTATGCATATATTCAGAAACAACAAGTTTCAGGCCCCTGCTGTGAAA
AAAAATGGCGCCATCAACCGAGGTGCTGGTTGTGGAGCACAGGGTGCGTT
TCCATACCACAGGGGTGTCTTTGCTGCTGCGGTCCGCAGCGCGCCGAAGA
GTCCCGGGGCCCCCTCCCTTCCGCTGCCCGCGCCCCCTCGCTCCGCCTTC
CCGGGGGACACAGGTGGAGGCGGGGCGGGTCCCCGGCGAGCGGCTGTGCG
CGCTGCTGGACGGGCCCGAGGGGCCGGGGAGCCCCCCGCTGCGCCGAGCC
GAGGAGGTGCCGTTACCACAGTTGTTGTTCGTGGACAAAAAGAAGAAGGG
TGCCGGGGATGGAGAGTGGGCGGCGGTGGGTGGAAGGGGAGTTCGCGAGC
GCTGGGAAAGGCCTACCAGTCCAACCCTACCTGGGCCTTACATCGACAAG
CTCAGACCTCACGCAACATCAATGCGGTCGGCCGGTGATAGGGGACGTGA
ATTGGGATAGACAAGAATAATGTATAAAACCACACACATGTACACGGCCC
GCCCATGCTGTTTAATTGTCACCAATGAATATTAAGGTCTCCTCAGGCTC
CCATTTCTGAATAAGGCAGCACAGATTGCGGTAACATCATGGATAGAAAT
CGCGCACCACCCTCTGAGAGGGAGTAGTGGGCAGCAAGAAAAACGCTGGG
CGTTTGTTTTTCGAACTAATAAAGTACCTCTCAGATTTAATTGTATTACT
TCCCATTGAGATAGAGCACAATGTTATCCAACAACTTTTATTATATTTCA
AGTCGTTTAGTGACCCTTTTGCAACCAGGCGCCAGGCCTTAGGGTTGCCA
GGTATACCTCTCATTCCATTGAGAGGTATACGTTTTCTCTACATTTTAGC
TAAGCCTGAGTGGTCGAGTGGTTAACAAGGCACGCTAGCCGTGCGAAGAA
GCCCCTGCCCCATGTTCGAATCAAGTATTCGGATTTTGGTAATCAGGTGC
CGGTCTAGCCAATACTTCAAAACGCTTGGACCATGGGCCCAGTCGTCATC
GGATCTCGGTAGGAGGAGGAGGGCAAGGATTGGATACGATGGTGATGATT
TAGAAAAATGACGTTGATTGGAGATAGCGCTGGAACTTCCAGGAGTGGGC
GACTTTTTTTTTTGTCTACATTACTCATTATATACAATGCCACCCCCCAC
TACACTGTCATACTTCACTGTCATTGTACACATAGCCAAATTCTGGCAAC
TCATCGGAGCAGTTCCTTGGTATGGAAGTGACCTTGGCTACTCCTACAAT
CTTTGACTGTTGGGCGATGTTCCAGTGATTCATGGCGTTGTCTTACTTCC
AGCACTCCAGGCTTTTCTTCTTCAGGACTCTTTCTTGCAGCCTCTCCATC
TCAACAGCAGGTCAAAAAAAAAGGAAAGAAAGAAAAAAAAAAAAGTGTTG
CCAGCAGGCCAAAGACGAGAGGTGCTGCGCAGTACCACATTCAAGCCACT
TCCGCCCCACCTCAAAGCTCCATTCTATAGTAACTTCAGCAGTCCACTGA
ACCGTTTCTTCAGTCACCACTCCTAAAGTCTTAACTGTCGCCCCACCACC
AGACTCGACGGTGGTTGGCATCATCCTTCAGAGGTCTGCGCGTCGCGTCG
GAATTGGAAAGTGCTCACAAACTCGCATGTTGCTCGTGGTGGGGTCCATG
AGCAAGGAATGGAGCACACACTTGCTGATTTTCATAGGGAAAAGAATGAT
GCGCATCATTACACAAAGAAACAAGAGCTGTGTAGGATCTGAAAAACATA
TGCTTCGCTCGGTCACTTGTGCAAGAGCGACCCAGAAGGGGCGCCATGTC
CATGGGCCAATGAGGCATTAAAAAAGCTGGACTTACTCGAACGATCAACC
ACTCCCCGCCCCAGGAGTCGTTCGAATTCCAGAGGACTTGCTCTCGAGGA
GCAAAAGTGAGGTCCCAGATTTGAAACGAAGTCTTCTGAACTCAGCCAGA
GATCCTGTCGCTTTTCTGTGACTTACGGAAGGGTACAACGACCTGACAGA
GCGACAACAGAAGGAGGTCGTTAGCGAAGGATGGTGTCCCGAGGTGCATC
AGAGAGATGTTCGCGAGCATTGGAAGGCGCAATGATATGAGCGCCAACAC
TACAAGGTTCACATCGACAAGCTCAGAGATGGCTCAACATGACGGATCGG
CTGGAGTATAGAGGACCTTCCTCAGGATGTGACTAGGCATGAGAACGTGT
TAAAACACACACACACACACATTTAAGTGACAAAAATTATTGTTTGTTTC
AACTGATGCTACCTCTACCCGTTATCGTCCAGGTATCCTTGTACGTGCTG
CTGTTGGAGAGCGGGGTGCTTTAGATCATTCCCTATACCCGGGATTCTAG
CTCTATAGCATTTTTTGAAAGTTGCCAAGGAGTTGGGCGGAAGATGAAGT
GGTCTTAATTGATGGAGGTGTTGTGAGCGTGCTGCAGCCAGCCGAGCTTA
TCTCTGAGGTTTTGGAGCAGAGGGTTCATCAAACTCTGGTGTCAAGTTGC
GAGCCATACCACGCCCTCGCCCATCTAGCAGTTTGCAGGTGAATCCGATG
GCAGCTTGTTCTCGTCTACTTTCCAGTGAAGGTGTTGAAAAGGATCACCA
GATGACTCAAGACTCGAAATATTCAATCATAAAACTTTGTTGGATTATAC
ATTATATATGTATGCATATATGCTCCAACTTAGTTGTGGCAAGTATATAA
TATATTATCATCTGATGATCCATCATTAGTAGCCAAAAACATAAATTTTG
GTTGAAGTACCACTCTTCAAAAACTCTCTGGTTGGATGAATTCTATACGT
CGACCTCCTACCCCCCCACACTCCCAGCACCCACACATCCACACCCACCT
TGTTGTCCGCGCCCCTCCCCCCCACACACACATGCACACCGCCAGCTGGC
CGGCTGCCGGATCGAGTACGTGTGCGCGGCCCACATCTACGACAGCGTGT
TCAGCAACATCCGCGTGTGGCTGCGCGACGGCTACTCCCCCGCCAAGATT
CAGACGTTCCTGGACCAGACATGGAACCGGGAGCTGTAAGCAGGAGGGGG
GGGGTCATACACGCAGCACCTACAGCAGCAGCATGGGGGAGGCTCACAAG
AACTGACAGCCGTCACTTATCTGTTGTTTTAGTGAATGGAAACATCACAG
CAGTCAGTACCAACAAAAGTTGGGTGGATCCCTTTTTATTGGTACCACAT
GTTTATCTGGCACTGCTGTGCTGCTGGCTTGGTGGGTGGATGATAGAGGA
CGCAGATCGCTGGGCAGGTAGTTGTTGTTGCTATGTATAGTGAGTGATTA
TGTGTGATGGTGATAGTGATATTAAATTATATTATTAAGTTTTTACCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:4367790..4371637-

>mRNA_H-akashiwo_Contig11.97.1 ID=mRNA_H-akashiwo_Contig11.97.1|Name=mRNA_H-akashiwo_Contig11.97.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=720bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4367790..4371637- (Heterosigma akashiwo CCMP452)
GGGCGGCAAGAAGGCGCCGTGCTGCGTGGTTGTGGACGTGGACTGCCCCG
CGACCTTCCGCGAGCTGTCCGAGGTGCTCTCCCGGGCCGGCTTCGAGCCC
GTGGATGTGCCCCCCCGGGACGACGCGCGGCGGGGTACGGCGGTGGCGGC
GGAGGCCGAGGGGGCCGCGCCGCTGCTGTGGGTGGCGCAGCGGGAGACGA
GCGCCCACACCGCCGACCACGTCTGCGGCCTCGTGGAGGCGGGGCGGGTC
CCCGGCGAGCGGCTGTGCGCGCTGCTGGACGGGCCCGAGGGGCCGGGGAG
CCCCCCGCTGCGCCGAGCCGAGGAGCTGGCCGGCTGCCGGATCGAGTACG
TGTGCGCGGCCCACATCTACGACAGCGTGTTCAGCAACATCCGCGTGTGG
CTGCGCGACGGCTACTCCCCCGCCAAGATTCAGACGTTCCTGGACCAGAC
ATGGAACCGGGAGCTGTAAGCAGGAGGGGGGGGGTCATACACGCAGCACC
TACAGCAGCAGCATGGGGGAGGCTCACAAGAACTGACAGCCGTCACTTAT
CTGTTGTTTTAGTGAATGGAAACATCACAGCAGTCAGTACCAACAAAAGT
TGGGTGGATCCCTTTTTATTGGTACCACATGTTTATCTGGCACTGCTGTG
CTGCTGGCTTGGTGGGTGGATGATAGAGGACGCAGATCGCTGGGCAGGTA
GTTGTTGTTGCTATGTATAG
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