mRNA_H-akashiwo_Contig11.88.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.88.1
Unique NamemRNA_H-akashiwo_Contig11.88.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig11.88.1 vs. uniprot
Match: A0A7S4DFL2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFL2_HETAK)

HSP 1 Score: 162 bits (409), Expect = 1.290e-49
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:    1 QTFRQQAGLDPDRGAAFFGVMAQEDTTAFHEQNNLDGQEESSDDEEAQLSELVEVNGTDHEYELNIDQASLPQSNHWQRRK 243
            QTFRQQAGLDPDRGAAFFGVMAQEDTTAFHEQNNLDGQEESSDDEEAQLSELVEVNGTDHEYELNIDQASLPQSNHWQRRK
Sbjct:   51 QTFRQQAGLDPDRGAAFFGVMAQEDTTAFHEQNNLDGQEESSDDEEAQLSELVEVNGTDHEYELNIDQASLPQSNHWQRRK 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DFL2_HETAK1.290e-49100.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:3721485..3722230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size250
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.390412-CDS-H-akashiwo_Contig11:3721484..37215411681387076.390412-CDS-H-akashiwo_Contig11:3721484..3721541Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3721485..3721541 +
1681387076.3996122-CDS-H-akashiwo_Contig11:3722038..37222301681387076.3996122-CDS-H-akashiwo_Contig11:3722038..3722230Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3722039..3722230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.88.1prot_H-akashiwo_Contig11.88.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 3721485..3722230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.88.1

>prot_H-akashiwo_Contig11.88.1 ID=prot_H-akashiwo_Contig11.88.1|Name=mRNA_H-akashiwo_Contig11.88.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=83bp
QTFRQQAGLDPDRGAAFFGVMAQEDTTAFHEQNNLDGQEESSDDEEAQLS
ELVEVNGTDHEYELNIDQASLPQSNHWQRRKR*
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mRNA from alignment at H-akashiwo_Contig11:3721485..3722230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.88.1 ID=mRNA_H-akashiwo_Contig11.88.1|Name=mRNA_H-akashiwo_Contig11.88.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=746bp|location=Sequence derived from alignment at H-akashiwo_Contig11:3721485..3722230+ (Heterosigma akashiwo CCMP452)
CAGACCTTCCGGCAGCAGGCCGGGCTCGACCCGGACCGGGGCGCCGCCTT
CTTCGGCGTGAGCCGGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGTTCGTTTTGCCCCCCCCCCCTGTGATCCAAGGACATCCGAGTTC
GGTCGAGGAGCGTGCGCTGCGCCTTGAATTCTTAAATCCATCTCGCCATC
TTGCCAAGCCCCTTGTGCAGAGATGACATAAGTGTGCGGGAGCCGTTGGG
GTTGTTTTCCTCTTTTGTTCACGCCTCATTGTGGCTGCAAGCAAGTTGCT
CATTCTTCACATGCACCTCACTGTGGATTGCCATCATCATGAGAATGCAG
CACAACATTTTATGGGGTTGAAAAATGGTCCACCCGACGATAATTATTTA
TGAACCATGTTTTAAAAAGAAGCAGTAGAAAAACGAAAGAAAGAAAGAAA
GAAGAAACATGTGCATACTACATAGAGTTGTTCTGGAATAATACTCAGGT
GAGCTGATTTAATGTGTGCTGGTAATGATGTCAACAACAATCGTCTGCGG
TTAGGTCATGGCCCAAGAAGACACCACAGCTTTCCATGAACAGAACAATT
TGGATGGTCAAGAAGAGTCATCTGATGATGAAGAAGCACAGTTGTCAGAG
CTCGTTGAGGTAAATGGGACTGACCATGAGTATGAACTCAATATTGACCA
AGCTTCACTCCCACAAAGCAATCACTGGCAGAGAAGAAAAAGGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:3721485..3722230+

>mRNA_H-akashiwo_Contig11.88.1 ID=mRNA_H-akashiwo_Contig11.88.1|Name=mRNA_H-akashiwo_Contig11.88.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=249bp|location=Sequence derived from alignment at H-akashiwo_Contig11:3721485..3722230+ (Heterosigma akashiwo CCMP452)
CAGACCTTCCGGCAGCAGGCCGGGCTCGACCCGGACCGGGGCGCCGCCTT
CTTCGGCGTCATGGCCCAAGAAGACACCACAGCTTTCCATGAACAGAACA
ATTTGGATGGTCAAGAAGAGTCATCTGATGATGAAGAAGCACAGTTGTCA
GAGCTCGTTGAGGTAAATGGGACTGACCATGAGTATGAACTCAATATTGA
CCAAGCTTCACTCCCACAAAGCAATCACTGGCAGAGAAGAAAAAGGTGA
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