mRNA_H-akashiwo_Contig11.79.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.79.1
Unique NamemRNA_H-akashiwo_Contig11.79.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: A0A7S4DI41_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DI41_HETAK)

HSP 1 Score: 330 bits (846), Expect = 8.190e-114
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 2
Query:  122 MPQDPPPPDEGDPFDLVFHVGASGLEEDTDSERLLEAIRTLRSRLENECSINEAGELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGFDRWKRPVVVLDNAAENERDPTAIVTHTAFNLEFAVA 601
            MPQDPPPPDEGDPFDLVFHVGASGLEEDTDSERLLEAIRTLRSRLENECSINEAGELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGFDRWKRPVVVLDNAAENERDPTAIVT+TAFNLEFAVA
Sbjct:    1 MPQDPPPPDEGDPFDLVFHVGASGLEEDTDSERLLEAIRTLRSRLENECSINEAGELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGFDRWKRPVVVLDNAAENERDPTAIVTYTAFNLEFAVA 160          
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: A0A218WPL3_PUNGR (CRAL-TRIO domain-containing protein n=3 Tax=Punica granatum TaxID=22663 RepID=A0A218WPL3_PUNGR)

HSP 1 Score: 71.6 bits (174), Expect = 2.170e-11
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  200 EDTDSERLLEAIRTLRSRLENECSINEAGELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGF-DRWKRPVVVLDNAAENERDPTAIVTHTAFNLEFAV 598
            ED DS +  E +  LR+ L         G L      +CTDSCLRR++VAR  + +KA +ML E++KWR   +P  +    P + + G TGK   A F DR+ R V+++    +N   P   + H  + +E ++
Sbjct:   14 EDDDSHKA-EKVSELRAAL---------GSLSGRSLKYCTDSCLRRYLVARNWNVNKARKMLEESIKWRESYKPEEIRW--PEVAHEGETGKVSRANFFDRFGRTVLIMRPGKQNTASPEGNIRHLVYIIENSI 135          
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: A0A8J5FAZ3_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FAZ3_ZINOF)

HSP 1 Score: 71.6 bits (174), Expect = 4.560e-11
Identity = 47/134 (35.07%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  200 EDTDSERLLEAIRTLRSRLENECSINEAGELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGF-DRWKRPVVVLDNAAENERDPTAIVTHTAFNLEFAV 598
            +D D+E   E I  LR+         E G L      +CTD CLRR++VARK D  K+ +ML E ++WR   +P  +   +  +   G TGK Y A F DR  R V+V+  A +N       + H  + LE A+
Sbjct:   12 QDHDAENQEEKIEELRA---------EIGPLEGRSLKYCTDECLRRYLVARKWDVGKSKKMLEETVEWRSSYKPEEIRWRE--VAEEGETGKVYRADFRDREGRTVIVMRPAKQNTNSQENQLRHLVYLLENAI 134          
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: A0A8J5KRL0_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KRL0_ZINOF)

HSP 1 Score: 70.1 bits (170), Expect = 6.390e-11
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  278 EAGELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGF-DRWKRPVVVLDNAAENERDPTAIVTHTAFNLEFAV 598
            E G L      +CTD CLRR++VARK D  K+ +ML E ++WR   +P  +   +  +   G TGKAY A F DR  R V+V+  A +N       + H  + LE A+
Sbjct:   29 EIGPLEGRSLKYCTDECLRRYLVARKWDVAKSKKMLEETVEWRSSYKPEEIRWRE--VAEEGETGKAYRADFHDREGRTVIVMRPAKQNTSSQENQLRHLVYLLENAI 134          
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: A0A7N0UC19_KALFE (CRAL-TRIO domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UC19_KALFE)

HSP 1 Score: 68.6 bits (166), Expect = 2.690e-10
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  311 WCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGF-DRWKRPVVVLDNAAENERDPTAIVTHTAFNLEFAV 598
            +C+D+CLRR++VAR  + DKA +ML + L+WR   +P  ++   P +   G TGK  IA F DR  R V+++  A E    P   + H  + +E AV
Sbjct:   39 YCSDACLRRYLVARSWNVDKAKKMLEDTLQWRASYKPEEITW--PEVAFEGETGKVSIANFHDRLGRTVLIMRPAFETSTSPEGNIRHLFYLIENAV 133          
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: A0A7S0KQ81_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KQ81_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 3.390e-10
Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  227 EAIRTLRSRLENECSINEAGELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGFDRWKRPVVVLDNAAENERDPTAIVTHTAFNLE 589
            +A+  LR +LE     + A     E R +  DSCL R++ ARK   DKA +ML+E LKWR   +P  ++  D  I N  +TGK Y +G  + +R V+V+    EN  + T  +    + LE
Sbjct:  156 DAMNALRLKLERCAKDDPALLSTPELRAFVDDSCLCRYLRARKWKIDKALKMLVETLKWRATMKPESITWND--IANEAKTGKQYRSGRCKRERRVLVMRPDRENTFNHTENIKFLVYMLE 274          
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: A0A0A0KWJ1_CUCSA (CRAL-TRIO domain-containing protein n=10 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KWJ1_CUCSA)

HSP 1 Score: 67.8 bits (164), Expect = 4.940e-10
Identity = 42/119 (35.29%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  257 ENECSINEA----GELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGF-DRWKRPVVVLDNAAENERDPTAIVTHTAFNLEFAV 598
            + E  INE     G L      +CTD+CLRR+++AR  + +K+ +ML E LKWR   +P  +  ++ A    G TGK   A F DR  R V+++    +N     A V H  + LE A+
Sbjct:   15 QEEGKINELRAALGPLSSRSSKYCTDACLRRYLIARNWNVEKSRKMLEETLKWRAAYKPEEIGWDEVAFE--GETGKVSRANFYDRHGRSVLIMRPGMQNTTPSEASVRHLVYLLENAI 131          
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: A0A6J1BUF7_MOMCH (random slug protein 5-like n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1BUF7_MOMCH)

HSP 1 Score: 67.0 bits (162), Expect = 9.440e-10
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  284 GELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGF-DRWKRPVVVLDNAAENERDPTAIVTHTAFNLE 589
            G+L      +C+D CLRR++VAR  D  K+ +M+ ++LKWR   +P  +   +  + + G TGKAY A F DR  R V++     +N   P   V H  + LE
Sbjct:   35 GQLSGRSVKYCSDECLRRYLVARNWDVHKSNKMMEDSLKWRATYKPEEIRWHE--VAHEGETGKAYRANFYDRLGRTVLISRPGMQNTNSPEDNVRHVVYLLE 135          
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: A0A7N0T844_KALFE (CRAL-TRIO domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0T844_KALFE)

HSP 1 Score: 67.0 bits (162), Expect = 9.580e-10
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  311 WCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGF-DRWKRPVVVLDNAAENERDPTAIVTHTAFNLEFAVARWA 610
            +CTD+CLRR++VAR  + +KA +ML + L+WR   +P  ++   P +   G TGK  IA F DR  R VV++    +N       + H  + +E AV   A
Sbjct:   39 YCTDACLRRYLVARNWNVEKAKKMLEDTLQWRASYKPEEITW--PEVAFEGETGKVSIANFHDRLGRTVVIMRPGLQNSTSTEGNIRHLFYLIEKAVLNLA 137          
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Match: UPI0009014AC3 (random slug protein 5-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009014AC3)

HSP 1 Score: 67.0 bits (162), Expect = 9.650e-10
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  311 WCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQPHLLSAEDPAIMNGGRTGKAYIAGF-DRWKRPVVVLDNAAENERDPTAIVTHTAFNLEFAV 598
            +CTD+CL+R++VAR  + DKA +ML E LKWR   +P  +   + A+   G TGK + AGF DR  R V++L    +N       + H  + +E A+
Sbjct:   38 YCTDACLKRYLVARSWNVDKAKKMLEETLKWRSTFKPEEIRWHEVAME--GETGKLFRAGFHDRHGRTVLILRPGMQNTTSIENQMKHLVYLIENAI 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DI41_HETAK8.190e-11499.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A218WPL3_PUNGR2.170e-1133.58CRAL-TRIO domain-containing protein n=3 Tax=Punica... [more]
A0A8J5FAZ3_ZINOF4.560e-1135.07Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A8J5KRL0_ZINOF6.390e-1137.96Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A7N0UC19_KALFE2.690e-1038.14CRAL-TRIO domain-containing protein n=1 Tax=Kalanc... [more]
A0A7S0KQ81_9CHLO3.390e-1035.54Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A0A0KWJ1_CUCSA4.940e-1035.29CRAL-TRIO domain-containing protein n=10 Tax=Cucur... [more]
A0A6J1BUF7_MOMCH9.440e-1035.92random slug protein 5-like n=1 Tax=Momordica chara... [more]
A0A7N0T844_KALFE9.580e-1036.63CRAL-TRIO domain-containing protein n=1 Tax=Kalanc... [more]
UPI0009014AC39.650e-1038.14random slug protein 5-like n=2 Tax=Ipomoea TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:3378250..3379615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog70448.A0A090M4G8
PFAMsCRAL_TRIO,CRAL_TRIO_N
Model size618
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.01e-13
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota,37M33@33090|Viridiplantae,34M1Y@3041|Chlorophyta
DescriptionCRAL/TRIO, N-terminal domain
Cds size495
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387079.7183306-UTR-H-akashiwo_Contig11:3378249..33783701681387079.7183306-UTR-H-akashiwo_Contig11:3378249..3378370Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 3378250..3378370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387079.7287507-CDS-H-akashiwo_Contig11:3378370..33785981681387079.7287507-CDS-H-akashiwo_Contig11:3378370..3378598Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3378371..3378598 +
1681387079.7376258-CDS-H-akashiwo_Contig11:3378738..33788541681387079.7376258-CDS-H-akashiwo_Contig11:3378738..3378854Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3378739..3378854 +
1681387079.7470796-CDS-H-akashiwo_Contig11:3378999..33790511681387079.7470796-CDS-H-akashiwo_Contig11:3378999..3379051Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3379000..3379051 +
1681387079.7569628-CDS-H-akashiwo_Contig11:3379516..33796151681387079.7569628-CDS-H-akashiwo_Contig11:3379516..3379615Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3379517..3379615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.79.1prot_H-akashiwo_Contig11.79.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 3378371..3379615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.79.1

>prot_H-akashiwo_Contig11.79.1 ID=prot_H-akashiwo_Contig11.79.1|Name=mRNA_H-akashiwo_Contig11.79.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=165bp
MPQDPPPPDEGDPFDLVFHVGASGLEEDTDSERLLEAIRTLRSRLENECS
INEAGELYEEFRGWCTDSCLRRFIVARKGDTDKAFEMLIEALKWRHKRQP
HLLSAEDPAIMNGGRTGKAYIAGFDRWKRPVVVLDNAAENERDPTAIVTH
TAFNLEFAVARWAWA
back to top

mRNA from alignment at H-akashiwo_Contig11:3378250..3379615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.79.1 ID=mRNA_H-akashiwo_Contig11.79.1|Name=mRNA_H-akashiwo_Contig11.79.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1366bp|location=Sequence derived from alignment at H-akashiwo_Contig11:3378250..3379615+ (Heterosigma akashiwo CCMP452)
AGCACCTTCACATGTACATTCATCATTGTCATTGTCATTGTGCATGCCTG GGTGGTGGTGGAATTGTCTTCGTGGCTAGTTATTTTTGAGCCTAGTTGAT TTTCCACCCTGAACTATAAAAATGCCCCAAGATCCTCCTCCCCCAGACGA AGGAGACCCTTTTGATCTGGTGTTCCATGTTGGGGCTTCTGGTTTGGAAG AGGATACCGACTCTGAGCGTCTTCTTGAAGCAATCCGGACTTTAAGATCT CGGCTAGAGAATGAGTGTTCTATTAACGAAGCTGGGGAACTTTACGAAGA GTTCAGGGGCTGGTGCACAGATAGCTGTTTAAGGCGGTTTATTGTAGCTG TAAGTTCATCAGCGGCACTTTGCACCCGTCCTTGCACTGTTTTTGTTGCT CGATTGACTTTCTGTAGCAAGGAATAGAGAGTATTAAATCACTTTGGCAA TGCACTTTACACTTAATTTTTCTTTGGGTAATCATCCAGCGGAAAGGAGA CACAGATAAAGCATTTGAAATGCTGATAGAGGCCCTGAAATGGAGGCACA AACGTCAGCCCCATCTTCTATCTGCAGAAGATCCAGCAATCATGAACGGA GGGAGGTAGGTACCCAATTATAAATTGGTGTTTTCTCAAGCTAAGATGAC TTGTTACGTGCAACTGGGGCAGTTAATTTTCTTGGTGGAAATCACTCCGG ATGTCTCCGGGTGTTCATTCAACTTCACTGACTAAAAACTTATTGCTCAG GACGGGAAAAGCATATATAGCTGGGTTTGACCGATGGAAGCGGCCAGTAG TGGTAAGCAGATTTGCTGCTTTACTTTCTTTCGTTGACAAGCCATGCTAA CTGTAGGGCTACAGTATCACTTCTCCAAGCACCTTTTCTACATTATCACA TGAATGCAACTTAAATATATACTGTTTTTGGTTTCTGCAGAACCGGAACC TTTTTTGCAGTTATTATCTGAAATAATATCTCAGCTGAGAAAACATTTTC CAGTAAACGACTGGGCAGTTTACCCCAAAGCACCGACAAAATCCTCAACA TGAGTGCAACCAGAAGCCGCCACACAAACAATCTCTCCTCCCCCGTCCTC CACTTTACACTGCAAATCAACTCTCTGCATTGCAAAAAAAAAAAAAAACA TCGTTGCAAATACACTCTGCATTGTAAAAGGAAGCCGCCCCACCGGGTCC TACTTTGCTCCCTTCCCTCCTTCCTTGTCTTGTCCTCCCTCCCCCCCGCC TCCATCCCGCCCGCCAGGTGTTGGACAACGCGGCGGAGAACGAGCGCGAT CCCACGGCCATCGTCACGCACACCGCCTTCAACCTGGAGTTCGCGGTGGC GAGATGGGCCTGGGCC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig11:3378250..3379615+

>mRNA_H-akashiwo_Contig11.79.1 ID=mRNA_H-akashiwo_Contig11.79.1|Name=mRNA_H-akashiwo_Contig11.79.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=495bp|location=Sequence derived from alignment at H-akashiwo_Contig11:3378250..3379615+ (Heterosigma akashiwo CCMP452)
ATGCCCCAAGATCCTCCTCCCCCAGACGAAGGAGACCCTTTTGATCTGGT
GTTCCATGTTGGGGCTTCTGGTTTGGAAGAGGATACCGACTCTGAGCGTC
TTCTTGAAGCAATCCGGACTTTAAGATCTCGGCTAGAGAATGAGTGTTCT
ATTAACGAAGCTGGGGAACTTTACGAAGAGTTCAGGGGCTGGTGCACAGA
TAGCTGTTTAAGGCGGTTTATTGTAGCTCGGAAAGGAGACACAGATAAAG
CATTTGAAATGCTGATAGAGGCCCTGAAATGGAGGCACAAACGTCAGCCC
CATCTTCTATCTGCAGAAGATCCAGCAATCATGAACGGAGGGAGGACGGG
AAAAGCATATATAGCTGGGTTTGACCGATGGAAGCGGCCAGTAGTGGTGT
TGGACAACGCGGCGGAGAACGAGCGCGATCCCACGGCCATCGTCACGCAC
ACCGCCTTCAACCTGGAGTTCGCGGTGGCGAGATGGGCCTGGGCC
back to top