mRNA_H-akashiwo_Contig11.73.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.73.1
Unique NamemRNA_H-akashiwo_Contig11.73.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:3149173..3151211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size160
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.2815382-CDS-H-akashiwo_Contig11:3149172..31492231681387076.2815382-CDS-H-akashiwo_Contig11:3149172..3149223Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3149173..3149223 -
1681387076.2905173-CDS-H-akashiwo_Contig11:3151103..31512111681387076.2905173-CDS-H-akashiwo_Contig11:3151103..3151211Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3151104..3151211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.73.1prot_H-akashiwo_Contig11.73.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 3149173..3151211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.73.1

>prot_H-akashiwo_Contig11.73.1 ID=prot_H-akashiwo_Contig11.73.1|Name=mRNA_H-akashiwo_Contig11.73.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=53bp
SGGSLQLLGRLSPLLASRLPETGVSCDLRGPQTWKLFGARPALARPRRLP
GHW
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mRNA from alignment at H-akashiwo_Contig11:3149173..3151211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.73.1 ID=mRNA_H-akashiwo_Contig11.73.1|Name=mRNA_H-akashiwo_Contig11.73.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2039bp|location=Sequence derived from alignment at H-akashiwo_Contig11:3149173..3151211- (Heterosigma akashiwo CCMP452)
TCTGGGGGATCACTGCAGCTCCTGGGTCGCCTTTCACCGTTATTGGCTTC
ACGCCTTCCAGAAACCGGTGTTTCCTGTGATCTACGAGGACCTCAAACAT
GGAAACTAGTGAGAGCTTTCAACATTTGTGAATTGCATGATGATGATAAT
ATCATACATAATATATATGGTGTTAGTATGATGATGATGATCATGGTATT
GTAAATTTATGTTCGATTTGCGCTTCAAATATATCCCGTCCTTCAAATGG
TAATCGTATGAATTCATCGTAGTACATTATTTTTCATCAAATTTTGGCTT
TTTTCCTCTTGAATTTTGGCTTCTTCCAAAATTTAATGTAAATTTGCAAA
GATCATCATTGGCCCATGGAATAAATTTGAAAATCTTTGTATTTTATTTT
TTCCCTTGAATTTATCGGCTTACTCAAACCAAAAAAAAAGTAAATTTGCA
AAGATCACTGGCTCATGGAAGAATAAAAATTTTGCAAAGATAATAGTATA
GTTGTCAATTTTTGAGGTAAAACACAGCGGAAGAAGAACATTATCAACAA
CAACTATAACAATTCCAGTTGCTTTTTAAATGTACATTAACAGACTGTGA
TAATGCTCCTTTGTTTTATTCACTGATTCGTCCACATGATTTCATTATAT
TATATATTACATATGATGATGTGATTATGTTTATTTTAGTTTCAAGTCTA
ACCCATCAAATCTCTTTCGGGGCAGAATCCCTAACTTCTAGAAGCAGACC
CTTCCACATCTTTCTGCCATTTCACAATACCACTACTCAAATCATCCTAA
GAACACAAGTAAAAGTATCACACAACACCCCAGCTGTACCACTGTCTTTG
AACCTCTATTGTAATATCAAAAAAACTATCTATTACTAACTGCCTTCTCA
ATCCCCAGCTTGACCAACCAGTAATGCAAGGTACACTTCACATCAAACTG
CGTCCTTGGGTCGGCCAGATCAACGTACATGGTAGTGAAGAAGGCCTTCC
CGTCCTCCAAGTTGTAGCCCCCTCCCTTGCCCTCGCCACCCTGGCAGCAG
ACGTGGCATCCCCCAATTGAGCACTCTTTGATCAGCCCAGTAGGGTGTTG
AACGATGCCACACTTCCCACAAGCTACATCCAATATCAGATCTGTCTATG
ACATTATCATTATCATGTTTAACTTACCGAAGGGAATAGACTTCTCACCA
GAATAGTTCAATCGTTCGAAGGTTCGACTTCGAAGCACAAAGTAGACGGA
TCAAATCCCGTCATGTCAAATTGGTGACAGTTGGATGTGCGCGCGATCGG
TTCGCCAACAGTGCTTCAAATTTGAGAATAAGAAAAATTGAACGATTAGC
GGGGGAACGTTGACGTGCCAACGAGAATGAACACGGGCCAGGCGGCCCTA
GACCCGGAAAAGCGCCACGCCTGACGGAATTATCCCGCAAGTATCGACCG
GTGCGATCTCGGCACAGCCGCGAAAGTAATACCGGTCAAAGATATGGGGA
CTGACTGGCACTATGAAGAGCATGAAGCATGGTGTGTACTACGTAGACAA
AAAAAAAAGGGGTTGTAGTATTATTTGCCTTTGTTGTAGAGCAACATTTT
TCAAAACTTTTTTTACCGTGGCTTGGAGTAGCCGAAATGCAGGTGTAGCT
CATAGAGTGGGATGTTATTAAGGATACCTTTTTTCTAATATTAATAAAAA
TGAACAATGCATCTGTCTACAGTAGTAAGTGATTTGGGAGAGCCTTTGAC
CAGGGCCGGGCCTGTTCCACGTCAAGACATCAATGTCAACGCAGAATGAA
AAAATCATAATCTATCACCCCTGTCTTGTCAGAGACTGCCCAAAAAAAAT
TGGACCGCAACAATAATAGATATTTTACTATTTTCAATAATTATTGTATA
TACAAAGTTACAAAGTCATCATAATCAACTGCTGCAGTTTTGTCTCTCCT
CCTTCCTCAACTTGCCCGCCATCCTCCCCCCCCGGCAGTTCGGTGCGCGG
CCAGCTCTTGCGCGCCCTCGGAGACTTCCTGGGCATTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:3149173..3151211-

>mRNA_H-akashiwo_Contig11.73.1 ID=mRNA_H-akashiwo_Contig11.73.1|Name=mRNA_H-akashiwo_Contig11.73.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=159bp|location=Sequence derived from alignment at H-akashiwo_Contig11:3149173..3151211- (Heterosigma akashiwo CCMP452)
TCTGGGGGATCACTGCAGCTCCTGGGTCGCCTTTCACCGTTATTGGCTTC
ACGCCTTCCAGAAACCGGTGTTTCCTGTGATCTACGAGGACCTCAAACAT
GGAAACTATTCGGTGCGCGGCCAGCTCTTGCGCGCCCTCGGAGACTTCCT
GGGCATTGG
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