mRNA_H-akashiwo_Contig11.47.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.47.1
Unique NamemRNA_H-akashiwo_Contig11.47.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: A0A1Z5JS37_FISSO (Tyr recombinase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS37_FISSO)

HSP 1 Score: 81.6 bits (200), Expect = 7.010e-17
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL 150
            PLT+DS+YQ+V+RAC+R+TG++TNPHLLRDMVVTHVR    ASE+ELEAL
Sbjct:  367 PLTQDSLYQIVSRACYRYTGKRTNPHLLRDMVVTHVRESTDASEKELEAL 416
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BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: A0A1Z5KRZ5_FISSO (Tyr recombinase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRZ5_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 1.800e-16
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL 150
            PLT+DS+YQ+V+RAC+R TG++TNPHLLRDMVVTHVR    ASE+ELEAL
Sbjct:  369 PLTQDSLYQIVSRACYRFTGKRTNPHLLRDMVVTHVRESTDASEKELEAL 418
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BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: A0A7S0BX13_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX13_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.110e-15
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL 150
            P T DSVY LVAR C+++TGRKTNPHLLRDM+VTHVR   A SE+ELEAL
Sbjct:  115 PFTADSVYSLVARQCYKYTGRKTNPHLLRDMIVTHVRKSDA-SEKELEAL 163
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BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: B7G080_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G080_PHATC)

HSP 1 Score: 77.4 bits (189), Expect = 2.320e-15
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL 150
            PLT+DSVYQ+V+RACF++TG++TNPHLLRDM+VTHVR   A SE++LEAL
Sbjct:  414 PLTQDSVYQIVSRACFQYTGKRTNPHLLRDMIVTHVRESDA-SEKQLEAL 462
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BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: A0A7S1ZA02_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZA02_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.560e-15
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    7 TRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGG-----------AASEQELEAL 150
            T +S+Y +V R CF  +G+KTNPHLLRDM+VTHVRGGG           +ASEQELEAL
Sbjct:    6 TANSIYNIVTRCCFEKSGKKTNPHLLRDMIVTHVRGGGQGGVGGDGTSHSASEQELEAL 64
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BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: K0R262_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R262_THAOC)

HSP 1 Score: 75.1 bits (183), Expect = 1.530e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL 150
            PLT +SVYQ+V+R C+++  +KTNPHLLRDM+VTHVR  G ASE+ELEAL
Sbjct:  603 PLTSNSVYQIVSRNCYKYKQKKTNPHLLRDMIVTHVRQNGDASEKELEAL 652
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BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: B8LCA0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCA0_THAPS)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL 150
            PLT +SVYQ+V+RAC+ +  +KTNPHLLRDM+VTHVR    ASE+ELEAL
Sbjct:  715 PLTANSVYQIVSRACYNYKQKKTNPHLLRDMIVTHVRKNADASEKELEAL 764
[Close]
BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: A0A7S2URW8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URW8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.250e-12
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL 150
            P ++ SVY +V R+C+++TG+KTNPHLLRDM+VTHVR   A SE++LEAL
Sbjct:  495 PFSKHSVYAIVTRSCYKYTGKKTNPHLLRDMIVTHVRDSDA-SEKQLEAL 543
[Close]
BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: A0A1V9Z6I2_9STRA (Tyr recombinase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6I2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.740e-12
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL 150
            P T D +Y+   RA +RHTG+KTNPHLLRD +VT++RG  +A+E++LEAL
Sbjct:  431 PATADFIYRTFTRAIYRHTGKKTNPHLLRDSIVTYLRGQSSATEKDLEAL 480
[Close]
BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Match: A0A6G0WC26_9STRA (Tyr recombinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC26_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.740e-12
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL 150
            P T D +Y+   RA +RHTG+KTNPHLLRD +VT++RG  +A+E++LEAL
Sbjct:  428 PATADFIYRTFTRAIYRHTGKKTNPHLLRDSIVTYLRGQSSATEKDLEAL 477
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z5JS37_FISSO7.010e-1774.00Tyr recombinase domain-containing protein n=1 Tax=... [more]
A0A1Z5KRZ5_FISSO1.800e-1674.00Tyr recombinase domain-containing protein n=1 Tax=... [more]
A0A7S0BX13_9STRA1.110e-1574.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7G080_PHATC2.320e-1572.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1ZA02_9STRA5.560e-1559.32Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0R262_THAOC1.530e-1468.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B8LCA0_THAPS2.850e-1468.00Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2URW8_9STRA2.250e-1262.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1V9Z6I2_9STRA5.740e-1258.00Tyr recombinase domain-containing protein n=1 Tax=... [more]
A0A6G0WC26_9STRA5.740e-1258.00Tyr recombinase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:1752385..1754155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr46148
Model size152
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue3.8e-16
EggNOG OGs2A75T@1|root,2RYDE@2759|Eukaryota,2XB10@2836|Bacillariophyta
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387078.5119655-CDS-H-akashiwo_Contig11:1752386..17524431681387078.5119655-CDS-H-akashiwo_Contig11:1752386..1752443Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1752387..1752443 -
1681387078.5235066-CDS-H-akashiwo_Contig11:1754062..17541551681387078.5235066-CDS-H-akashiwo_Contig11:1754062..1754155Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1754063..1754155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.47.1prot_H-akashiwo_Contig11.47.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 1752387..1754155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.47.1

>prot_H-akashiwo_Contig11.47.1 ID=prot_H-akashiwo_Contig11.47.1|Name=mRNA_H-akashiwo_Contig11.47.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
PLTRDSVYQLVARACFRHTGRKTNPHLLRDMVVTHVRGGGAASEQELEAL
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mRNA from alignment at H-akashiwo_Contig11:1752385..1754155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.47.1 ID=mRNA_H-akashiwo_Contig11.47.1|Name=mRNA_H-akashiwo_Contig11.47.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1771bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1752385..1754155- (Heterosigma akashiwo CCMP452)
CCGCTGACCCGGGACAGCGTCTACCAGCTGGTGGCGCGCGCCTGCTTCCG
CCACACCGGCCGCAAGACCAACCCCCACCTGCTCCGGGACATGGTGCCCC
CCGCCCTGCCCCGGCCCTGCCCCATAAACCTACCCACCCACCCACACTCA
CGGAACGGCAAGCTGAACACAAAGGGATGATGGGGCCTGGGTATATTTGC
AGCGATAATTTGTAATATATTATTGTATTTGCACTCCCGTCCCCTCCTTG
GTTTTCTTTATTATAATTTTCTTCCCGTGGAATGGTTTGTAACTGGAAAC
ACTACTACTCCAAGCGCTAGGACGGGGCCAATTCAAGCCTTTTAGATTAG
ATTCTAATGAGGAGGGTGTAATCACGGCTTGATAGAATTGTAGTCTTCGA
GACTGTATACTTGTTCTTTTCTGTCACGTTCAGCTCTTTGTACTCCTTTT
ACTCCTTATACATGTGTTACTATTTACATCCTTGCCAGTACGAAACCCGC
TGTTTCCTTTTGGGATTTTAGAAAGGCCTATTAGCTTTCGTGACAAACCT
AAGAAGAAGAGGAGTTGACTGACGTAGAAGTGGAAATCACGATGTTGAAA
GAATTCATCAGCAGCAGCACCACCACACTACACCTTCTTACCTTACACTC
GTTTCTATCAATAAACAACACATACTCATTTGGATTCAGCCCATCAGAGA
GGCTAGCAGGGTCATCCTGCCTTCTAGACGATCGTTCGTGATCGACCGGA
GACGGCTGTAGGAGGGTCGGGTGTATGAAGAACTACACCTATAACACATT
CATGTTGTTTGTTGGAGGAAGAATAGCCTGAATTGAACATGCATAACGTA
TACAATGCATGTGTGATGGAGCCCCAAGAACAAAAAACACACGGTGCGAC
GGTGGTGAGAATGGTGCGCTGCAAGAAATCTTTTTGAAGTGTTGTAAGCT
TTTTAGTTTCAAACCCAAGTGTATTTTGATTGATTGAGCTTTAGCGTGCT
GTGAGAATTATTTTGGCCAACTATTATTGCTATTATTATTTTTCTGGCCA
ATCAGCTTTGAGTGCTTTATCTTGGCAGCAAAATATATATAGTCCGCGAG
GGCCTGAGGCAAAAAGGTTGTGGTCCGCTTGCGCTTGCTCATCCCAGAAA
TATGCTCTTGGTGACCTTTTCTAGAAGTCTAAAGAGCCAGACCCTTCGGC
AAGTCAGATCTTGGCCAGAGCACATGGCGGCAATATGTCTTACGGCAAAT
TTATTCATCAATTTTTGGGCGGCTCCCTTCTTTTGATGGCCACAGAGCAG
ACACCAAGACCAGCACGCTTCTTTTGGTGCCATCCCCTCTCACACCTGGA
ATCCGACCAGGGCAAGTGCCTCAATACAGTTGGAACTGAAGCTATCAACA
TGCCAGTCACCTTCCAATATCTGCATCTTGGCCGTCACCATGTCCATAGC
TTCCTGCGCTCCAAGCTCTTCAAACTTGAAGAAGCTGGCCCCCTTCAACT
CCTCATTGAGTTCACCCCATCTGGCTTTCCCCCACCAGTGTACTTTCCTT
TCCTTGACGATACATAGCACGCGGCGCGGCTCTCAGCTGTAATTTCTGCC
CAGCAGTTCACCATCATCAATTGTGATCTCTGTCATTCCTGGTGGCATAC
CCCAATTCTATCGGTTGCGCTTCTTCACGCCCGTCCGGGCGGCGGCGGGT
ATGGGGGGGAAGGTGGTGACCCACGTGCGGGGCGGCGGCGCGGCCTCCGA
GCAGGAGCTGGAGGCGCTGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:1752385..1754155-

>mRNA_H-akashiwo_Contig11.47.1 ID=mRNA_H-akashiwo_Contig11.47.1|Name=mRNA_H-akashiwo_Contig11.47.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1752385..1754155- (Heterosigma akashiwo CCMP452)
CCGCTGACCCGGGACAGCGTCTACCAGCTGGTGGCGCGCGCCTGCTTCCG
CCACACCGGCCGCAAGACCAACCCCCACCTGCTCCGGGACATGGTGGTGA
CCCACGTGCGGGGCGGCGGCGCGGCCTCCGAGCAGGAGCTGGAGGCGCTG
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