mRNA_H-akashiwo_Contig11.43.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A7S4DI65_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DI65_HETAK) HSP 1 Score: 211 bits (536), Expect = 7.200e-67 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 2
Query: 2 MDSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW 310
MDSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW
Sbjct: 1 MDSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW 103
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: D8LTM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM2_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.080e-23 Identity = 49/101 (48.51%), Postives = 72/101 (71.29%), Query Frame = 2
Query: 5 DSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEV 307
+SE+NLY YE + + + ++ VLPVT++TG+LG+GKTTL++ L++K NL+IA+VVN+YG++DHDG +LE G KL G C+CC L L E+V
Sbjct: 4 ESEANLYRMYEKRQYDATRQRPVLPVTIVTGFLGAGKTTLLRKILRSKHNLRIAAVVNEYGTVDHDGGVLERDGQTDSVDKLMGGCVCCHTSLGGQLEEKV 104
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A6H5JSJ2_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ2_9PHAE) HSP 1 Score: 102 bits (255), Expect = 2.380e-23 Identity = 49/100 (49.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query: 8 SESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEV 307
SE+NLY YE + + + ++ VLPVT++TG+LG+GKTTL++ L++K NL+IA+VVN+YG++DHDG +LE G KL G C+CC L L E+V
Sbjct: 5 SEANLYRMYEKRQYDATRQRPVLPVTIVTGFLGAGKTTLLRKILRSKHNLRIAAVVNEYGTVDHDGGVLERDGQTDSVDKLMGGCVCCHTSLGGELEEKV 104
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A835Z0W0_9STRA (Putative cobalamin synthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W0_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 8.320e-23 Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 2
Query: 8 SESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGH--GLDKEASKLTGACMCCSERLRLGLREEV 307
+E NLY +YE + E + ++ VLPVT++TG+LG+GKTTL++ L + NLK+A++VND+G +DHDG +LE + KL+G C CC L + +V
Sbjct: 2 NEVNLYAAYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCCDTSLNTAFKGQV 103
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A1X7VTK7_AMPQE (CobW C-terminal domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VTK7_AMPQE) HSP 1 Score: 83.6 bits (205), Expect = 1.320e-16 Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 2
Query: 5 DSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEAS-KLTGACMCCSERLRLGLREEVW 310
+S NLY E L K+ LPVTL+TG+LGSGKTTL+ H L NK NLKIA+ VND+ SL+ DG I+ G KE +L+ C+CCS + R+ VW
Sbjct: 3 ESRCNLYMHREALAWAPKKKR--LPVTLVTGFLGSGKTTLLTHILNNKENLKIAAAVNDFASLNIDGQIVRGVVGGKEGVVELSNGCLCCS--VSGEFRKAVW 101
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A7S0KHD7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KHD7_9CHLO) HSP 1 Score: 80.1 bits (196), Expect = 2.250e-15 Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 2
Query: 17 NLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDK----EASKLTGACMCCSER--LRLGLRE 301
NL+ +YEL + LP+TLITG+LGSGKTTL K AL+N+ +L++A VND+ +++ D ++ G D + ++LT C+CC+ R L G+ E
Sbjct: 18 NLFRNYELRTAYAPEAKKRLPITLITGFLGSGKTTLAKRALENRQSLRVACAVNDFAAINVDARVVRRSGADAASGVQVTELTNGCVCCALRDDLEAGVAE 118
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: W7TYP9_9STRA (Cobalamin (Vitamin B12) biosynthesis CobW n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYP9_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 7.910e-15 Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 17 NLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILE------------GHGLDKEAS--------------KLTGACMCCSERLRLGLREEVW 310
N+ +YE L+ ++LPVT+ITGYLGSGKTTL++ L K NL+IA++VND G +HD +L+ HG + A L G+C+CCS L+ +R+ +W
Sbjct: 6 NMCMTYEQRTLDALTTPFILPVTIITGYLGSGKTTLLRKLLTQKKNLRIAAMVNDLGDFNHDVQLLQLEKTVANSSSPSNHGFSQAARLSPDKSNAPSDRIMDLHGSCLCCSH-LQQEMRQNIW 128
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A2W7BRE4_9CYAN (Cobalamin biosynthesis protein CobW n=1 Tax=Snowella sp. TaxID=2164131 RepID=A0A2W7BRE4_9CYAN) HSP 1 Score: 77.8 bits (190), Expect = 8.810e-15 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 2
Query: 74 LPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW 310
LPVT+ITG+LGSGKTTL+ H L N+ NLKIA +VN++G +D D +L +D++ +L+ C+CC+ + GL E V+
Sbjct: 16 LPVTIITGFLGSGKTTLLNHILNNRQNLKIAVLVNEFGDIDIDSQLLSS--VDQDMVQLSNGCICCT--INDGLVEAVY 90
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A085HKS7_9GAMM (Putative metal chaperone/GTPase n=1 Tax=Leminorella grimontii ATCC 33999 = DSM 5078 TaxID=1005999 RepID=A0A085HKS7_9GAMM) HSP 1 Score: 77.8 bits (190), Expect = 9.360e-15 Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 2
Query: 74 LPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSER 280
LPVT++TG+LGSGKTTL+ H L+N N KIA V N++G++ DG +LE G D E +LT C+CCS R
Sbjct: 7 LPVTILTGFLGSGKTTLINHLLKNYPNEKIAIVENEFGAVGIDGGLLERRG-DVEVIELTNGCVCCSVR 74
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A6P1VEL7_9SYNC (Cobalamin biosynthesis protein CobW n=1 Tax=Synechocystis sp. CACIAM 05 TaxID=1933929 RepID=A0A6P1VEL7_9SYNC) HSP 1 Score: 77.8 bits (190), Expect = 9.600e-15 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 2
Query: 74 LPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW 310
LPVT+ITG+LGSGKTTL+ H L N+ NLKIA +VN++G +D D +L +D++ +L+ C+CC+ + GL E V+
Sbjct: 16 LPVTIITGFLGSGKTTLLNHILNNRQNLKIAVLVNEFGDIDIDSQLLTS--IDQDMIQLSNGCICCT--INDGLVEAVY 90 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig11.43.1 >prot_H-akashiwo_Contig11.43.1 ID=prot_H-akashiwo_Contig11.43.1|Name=mRNA_H-akashiwo_Contig11.43.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp MDSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMback to top mRNA from alignment at H-akashiwo_Contig11:1479885..1480730- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig11.43.1 ID=mRNA_H-akashiwo_Contig11.43.1|Name=mRNA_H-akashiwo_Contig11.43.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=846bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1479885..1480730- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig11:1479885..1480730- >mRNA_H-akashiwo_Contig11.43.1 ID=mRNA_H-akashiwo_Contig11.43.1|Name=mRNA_H-akashiwo_Contig11.43.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1479885..1480730- (Heterosigma akashiwo CCMP452)back to top |