mRNA_H-akashiwo_Contig11.43.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.43.1
Unique NamemRNA_H-akashiwo_Contig11.43.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A7S4DI65_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DI65_HETAK)

HSP 1 Score: 211 bits (536), Expect = 7.200e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 2
Query:    2 MDSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW 310
            MDSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW
Sbjct:    1 MDSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW 103          
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: D8LTM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM2_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.080e-23
Identity = 49/101 (48.51%), Postives = 72/101 (71.29%), Query Frame = 2
Query:    5 DSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEV 307
            +SE+NLY  YE  + + + ++ VLPVT++TG+LG+GKTTL++  L++K NL+IA+VVN+YG++DHDG +LE  G      KL G C+CC   L   L E+V
Sbjct:    4 ESEANLYRMYEKRQYDATRQRPVLPVTIVTGFLGAGKTTLLRKILRSKHNLRIAAVVNEYGTVDHDGGVLERDGQTDSVDKLMGGCVCCHTSLGGQLEEKV 104          
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A6H5JSJ2_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.380e-23
Identity = 49/100 (49.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:    8 SESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEV 307
            SE+NLY  YE  + + + ++ VLPVT++TG+LG+GKTTL++  L++K NL+IA+VVN+YG++DHDG +LE  G      KL G C+CC   L   L E+V
Sbjct:    5 SEANLYRMYEKRQYDATRQRPVLPVTIVTGFLGAGKTTLLRKILRSKHNLRIAAVVNEYGTVDHDGGVLERDGQTDSVDKLMGGCVCCHTSLGGELEEKV 104          
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A835Z0W0_9STRA (Putative cobalamin synthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 8.320e-23
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 2
Query:    8 SESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGH--GLDKEASKLTGACMCCSERLRLGLREEV 307
            +E NLY +YE  + E + ++ VLPVT++TG+LG+GKTTL++  L  + NLK+A++VND+G +DHDG +LE     +     KL+G C CC   L    + +V
Sbjct:    2 NEVNLYAAYERRQHEAAARRPVLPVTIVTGFLGAGKTTLLQRVLSTRRNLKVAAIVNDFGEVDHDGKVLEAAQGAIKGGVQKLSGGCFCCDTSLNTAFKGQV 103          
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A1X7VTK7_AMPQE (CobW C-terminal domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VTK7_AMPQE)

HSP 1 Score: 83.6 bits (205), Expect = 1.320e-16
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 2
Query:    5 DSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEAS-KLTGACMCCSERLRLGLREEVW 310
            +S  NLY   E L      K+  LPVTL+TG+LGSGKTTL+ H L NK NLKIA+ VND+ SL+ DG I+ G    KE   +L+  C+CCS  +    R+ VW
Sbjct:    3 ESRCNLYMHREALAWAPKKKR--LPVTLVTGFLGSGKTTLLTHILNNKENLKIAAAVNDFASLNIDGQIVRGVVGGKEGVVELSNGCLCCS--VSGEFRKAVW 101          
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A7S0KHD7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KHD7_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 2.250e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   17 NLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDK----EASKLTGACMCCSER--LRLGLRE 301
            NL+ +YEL        +  LP+TLITG+LGSGKTTL K AL+N+ +L++A  VND+ +++ D  ++   G D     + ++LT  C+CC+ R  L  G+ E
Sbjct:   18 NLFRNYELRTAYAPEAKKRLPITLITGFLGSGKTTLAKRALENRQSLRVACAVNDFAAINVDARVVRRSGADAASGVQVTELTNGCVCCALRDDLEAGVAE 118          
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: W7TYP9_9STRA (Cobalamin (Vitamin B12) biosynthesis CobW n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYP9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.910e-15
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   17 NLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILE------------GHGLDKEAS--------------KLTGACMCCSERLRLGLREEVW 310
            N+  +YE   L+     ++LPVT+ITGYLGSGKTTL++  L  K NL+IA++VND G  +HD  +L+             HG  + A                L G+C+CCS  L+  +R+ +W
Sbjct:    6 NMCMTYEQRTLDALTTPFILPVTIITGYLGSGKTTLLRKLLTQKKNLRIAAMVNDLGDFNHDVQLLQLEKTVANSSSPSNHGFSQAARLSPDKSNAPSDRIMDLHGSCLCCSH-LQQEMRQNIW 128          
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A2W7BRE4_9CYAN (Cobalamin biosynthesis protein CobW n=1 Tax=Snowella sp. TaxID=2164131 RepID=A0A2W7BRE4_9CYAN)

HSP 1 Score: 77.8 bits (190), Expect = 8.810e-15
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   74 LPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW 310
            LPVT+ITG+LGSGKTTL+ H L N+ NLKIA +VN++G +D D  +L    +D++  +L+  C+CC+  +  GL E V+
Sbjct:   16 LPVTIITGFLGSGKTTLLNHILNNRQNLKIAVLVNEFGDIDIDSQLLSS--VDQDMVQLSNGCICCT--INDGLVEAVY 90          
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A085HKS7_9GAMM (Putative metal chaperone/GTPase n=1 Tax=Leminorella grimontii ATCC 33999 = DSM 5078 TaxID=1005999 RepID=A0A085HKS7_9GAMM)

HSP 1 Score: 77.8 bits (190), Expect = 9.360e-15
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 2
Query:   74 LPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSER 280
            LPVT++TG+LGSGKTTL+ H L+N  N KIA V N++G++  DG +LE  G D E  +LT  C+CCS R
Sbjct:    7 LPVTILTGFLGSGKTTLINHLLKNYPNEKIAIVENEFGAVGIDGGLLERRG-DVEVIELTNGCVCCSVR 74          
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Match: A0A6P1VEL7_9SYNC (Cobalamin biosynthesis protein CobW n=1 Tax=Synechocystis sp. CACIAM 05 TaxID=1933929 RepID=A0A6P1VEL7_9SYNC)

HSP 1 Score: 77.8 bits (190), Expect = 9.600e-15
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   74 LPVTLITGYLGSGKTTLVKHALQNKMNLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLREEVW 310
            LPVT+ITG+LGSGKTTL+ H L N+ NLKIA +VN++G +D D  +L    +D++  +L+  C+CC+  +  GL E V+
Sbjct:   16 LPVTIITGFLGSGKTTLLNHILNNRQNLKIAVLVNEFGDIDIDSQLLTS--IDQDMIQLSNGCICCT--INDGLVEAVY 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DI65_HETAK7.200e-67100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8LTM2_ECTSI1.080e-2348.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSJ2_9PHAE2.380e-2349.00CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A835Z0W0_9STRA8.320e-2343.14Putative cobalamin synthesis protein n=1 Tax=Tribo... [more]
A0A1X7VTK7_AMPQE1.320e-1648.54CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S0KHD7_9CHLO2.250e-1540.59Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
W7TYP9_9STRA7.910e-1536.29Cobalamin (Vitamin B12) biosynthesis CobW n=1 Tax=... [more]
A0A2W7BRE4_9CYAN8.810e-1548.10Cobalamin biosynthesis protein CobW n=1 Tax=Snowel... [more]
A0A085HKS7_9GAMM9.360e-1555.07Putative metal chaperone/GTPase n=1 Tax=Leminorell... [more]
A0A6P1VEL7_9SYNC9.600e-1548.10Cobalamin biosynthesis protein CobW n=1 Tax=Synech... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:1479885..1480730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTM2
PFAMsCobW_C,cobW
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.78e-24
EggNOG OGsCOG0523@1|root,KOG2743@2759|Eukaryota
DescriptionATP binding
Cds size309
COG categoryF
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387078.3940861-CDS-H-akashiwo_Contig11:1479884..14799561681387078.3940861-CDS-H-akashiwo_Contig11:1479884..1479956Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1479885..1479956 -
1681387078.4050841-CDS-H-akashiwo_Contig11:1480108..14801981681387078.4050841-CDS-H-akashiwo_Contig11:1480108..1480198Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1480109..1480198 -
1681387078.4147725-CDS-H-akashiwo_Contig11:1480371..14804091681387078.4147725-CDS-H-akashiwo_Contig11:1480371..1480409Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1480372..1480409 -
1681387078.4240565-CDS-H-akashiwo_Contig11:1480620..14807291681387078.4240565-CDS-H-akashiwo_Contig11:1480620..1480729Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1480621..1480729 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387078.436873-UTR-H-akashiwo_Contig11:1480729..14807301681387078.436873-UTR-H-akashiwo_Contig11:1480729..1480730Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 1480730..1480730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.43.1prot_H-akashiwo_Contig11.43.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 1479885..1480729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.43.1

>prot_H-akashiwo_Contig11.43.1 ID=prot_H-akashiwo_Contig11.43.1|Name=mRNA_H-akashiwo_Contig11.43.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
MDSESNLYDSYELLKLENSNKQYVLPVTLITGYLGSGKTTLVKHALQNKM
NLKIASVVNDYGSLDHDGHILEGHGLDKEASKLTGACMCCSERLRLGLRE
EVW
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mRNA from alignment at H-akashiwo_Contig11:1479885..1480730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.43.1 ID=mRNA_H-akashiwo_Contig11.43.1|Name=mRNA_H-akashiwo_Contig11.43.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=846bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1479885..1480730- (Heterosigma akashiwo CCMP452)
AATGGATTCAGAGAGCAATCTTTATGACTCTTATGAACTCCTAAAGCTAG AAAATTCTAATAAGCAATATGTCCTTCCAGTAACACTGATAACCGGGTAT TTGGGGTCTGGTAAGTACTTCGCAATAACAATGTTCTTCTCGTTCTATAC GCGTTGCTTAAGTTTGGTACCACCATTTTTTGTTTGTTTGTTTGTTTGTT TGTTTGTTTGTTTGTTTGTTTGTTTTTTTTTTTTTTTTTTGCGTTTTGTG TGTGCTTCATGAGCTCAATGACAAAACCAACAATATTCTTCTATCTCTTG TCTGGGCTCCCCAACTTTCAGGTAAAACCACCTTGGTAAAGCACGCGCTC CAGAACAAGGTAGATTGCATTTCTTGTTGTCAATCGTAAGCATAATACAT GTTTGTTTATGTTTTTTTTTTGCTTTCTGATGATGGCTGCAAAAAAAGGT TTTAATGAAAAAGCCTGTCAGGGTTTAGTACTATCGAACACGACTTGAAG TTAGCATTGGTCTTTATATATCAATCACTCAGATGAACCTGAAAATTGCA TCGGTGGTGAATGACTATGGCTCACTTGACCATGACGGGCACATTCTTGA GGGCCATGGCCTAGACAAAGAGGTACGAGAAAGGCCCTCACCCCCGCTGA AACATGAATGTCCTTTGGTTCGAACAGACACTATGCTACTCTAAGAACGG AGGGTTGGCCGCATTCTAATTAATGCATGTACACTGAAACGCCCCCTGGC CCGCCCGGCGTGCCCCGCCCCCAGGCCAGCAAGCTGACCGGGGCCTGCAT GTGCTGCAGCGAGCGGCTGCGGCTGGGCCTGCGCGAGGAGGTGTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:1479885..1480730-

>mRNA_H-akashiwo_Contig11.43.1 ID=mRNA_H-akashiwo_Contig11.43.1|Name=mRNA_H-akashiwo_Contig11.43.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1479885..1480730- (Heterosigma akashiwo CCMP452)
ATGGATTCAGAGAGCAATCTTTATGACTCTTATGAACTCCTAAAGCTAGA
AAATTCTAATAAGCAATATGTCCTTCCAGTAACACTGATAACCGGGTATT
TGGGGTCTGGTAAAACCACCTTGGTAAAGCACGCGCTCCAGAACAAGATG
AACCTGAAAATTGCATCGGTGGTGAATGACTATGGCTCACTTGACCATGA
CGGGCACATTCTTGAGGGCCATGGCCTAGACAAAGAGGCCAGCAAGCTGA
CCGGGGCCTGCATGTGCTGCAGCGAGCGGCTGCGGCTGGGCCTGCGCGAG
GAGGTGTGG
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