mRNA_H-akashiwo_Contig11.41.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.41.1
Unique NamemRNA_H-akashiwo_Contig11.41.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig11.41.1 vs. uniprot
Match: A0A7S3XJR6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJR6_HETAK)

HSP 1 Score: 149 bits (375), Expect = 1.040e-42
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 2 
Query:    2 RPGHVADGVLYFRLTAARALGLTEAALHLRHGVSLDAMTQLLLRLLGAEGVPVSPAYLAAISRDDKEEEAQGAALEEGSH 241
            R GHVADGVLYFRLTAARALGLTEAALHLRHGVSLDAMTQLLLRLLGAEGVPVSPAYLAAISRDDKEEEAQGAALEEGSH
Sbjct:   21 RSGHVADGVLYFRLTAARALGLTEAALHLRHGVSLDAMTQLLLRLLGAEGVPVSPAYLAAISRDDKEEEAQGAALEEGSH 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XJR6_HETAK1.040e-4298.75Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:1427764..1433741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size691
Hectar predicted targeting categoryother localisation
Exons2
Cds size459
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.0886889-UTR-H-akashiwo_Contig11:1427763..14279951681387076.0886889-UTR-H-akashiwo_Contig11:1427763..1427995Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 1427764..1427995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.0970323-CDS-H-akashiwo_Contig11:1427995..14283331681387076.0970323-CDS-H-akashiwo_Contig11:1427995..1428333Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1427996..1428333 -
1681387076.1055644-CDS-H-akashiwo_Contig11:1433620..14337411681387076.1055644-CDS-H-akashiwo_Contig11:1433620..1433741Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1433621..1433741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.41.1prot_H-akashiwo_Contig11.41.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 1427996..1433741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.41.1

>prot_H-akashiwo_Contig11.41.1 ID=prot_H-akashiwo_Contig11.41.1|Name=mRNA_H-akashiwo_Contig11.41.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=153bp
PPRARGGRRAVLPADGGTGPGADRGRPAPAPRRQPRRHDPAAASVARGRG
RAGVPRLPRRHLPRRQGGGGSGRRPGGGQPPRRPLLLGGDPPALAAVCYG
GDGGWGRRFLGGGCLVGGAAEVRSRGDAAAHRAHHDVRLWLLVGGVPITI
KL*
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mRNA from alignment at H-akashiwo_Contig11:1427764..1433741-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.41.1 ID=mRNA_H-akashiwo_Contig11.41.1|Name=mRNA_H-akashiwo_Contig11.41.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5978bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1427764..1433741- (Heterosigma akashiwo CCMP452)
CCGCCCAGGGCACGTGGCGGACGGCGTGCTGTACTTCCGGCTGACGGCGG
CACGGGCCCTGGGGCTGACCGAGGCCGCCCTGCACCTGCGCCACGGCGTC
AGCCTCGACGCCATGACCCAGGTGCCCCCCCCCCAGGGGCCTCCTCCTCC
GGACGCTGCTTCCTCCTCCTCCTCCTCCTCCCCTCCTTTCTTCTTTCTCG
GAAAATTGAGATCGACTCACACTTTACTCCTACTTTCACACTTCGTTCCC
ACCGAATGTTTTTTCTCTCACACTTCATTCACACCAAATTCGTACCACTC
GAAAAAAATTTGAGGATGACATCATGCTCCCGGAGTGTTTTAGGATCTGA
TCTTTGTATCCTTTTCCAGAACACGTCTTCTTCTTCTTCTGTTCGTCTTT
CATTGTGTTTGCGCTTTGAGCATTTGCGCGTTTGCGCTCCCTAATTCAGC
AACAAGTAGACACAAGCACGCACCACAGGAAAGCGACACAAAATCAACAA
CAGCCTTGGTGCTAGAGGTGCTGCTGCGCATTCGAGCCTTCTGTTTTGTT
CTTGTTGTTTTGTCAAAGTTAGATGCCTATGTATATTTTCAACAAAAATA
TCCTATGGTTTTATTTTTGTTTGATTTTCTTTTGAAATATATAAAGTTCA
GCTTTACTTGTTTCTCTGAAAAAATCCACTCCTTCGTCCCCTTCACAGGC
ATTTCGAGTTAGGCTGGTTCTACTTCTCAATATTAACGTTTTCGCCTAAC
TAAAAGTTTGCTTTGACCAGATCAAGTCACTTCTATTTGTTTGTGCCAAA
TTCAAAGAACGACGCGGGTAGTTCCAGATTGCTATCAACCAATGAGTTTC
ACAAAGACTATTTCTCAACTTTTCAGGAAGTTATATCAAGTAAAGAATTT
GTACTGGTCGTACTTCAGGGTGCCTCTTTTATCACGATCGAGCAGGGGAA
AAGAAAGCGTGGCTGAAAATACAAATCGAATCTTCTCGTTCTTGCTCTTC
TACCTTGTTCAATTTGTTTGCCAAACCACGTCAAACATCCAATCAAAGAG
CCCATACATTTCATTGGCAAGTTCAGTTTTTAAGTTCGAAGCTATTTTTG
TCGCGCTACATCACTAAATTCTGATCGGTTTGTTCATTTGATTGGACAGC
GACCGTTTTTGGAGGTCGGTGATTCGCAAGCTCAATCTGAAAAAAGTCGA
CTAGCCCAGTCCAAAAAATAGCTTTTTTTTGCTCTATTAGTCTGGCCTAG
TCGAGTCCGTTCAAAATTTGAGCAATTTTCGCCAAATATAGCTTTTTTTT
TAATCGAACTCGCCCAGGCAAACAAATAGAGCAAAAAAAAAGCCGTCTCG
CCTAGTCCAGTCAAGAGAAGTAGAACCAGCCTTAGGGTTGTCGGGTTGTC
TAATTTGCTTTTTTATATATAGATTTGGGAGCCAAAGTTTTTAGGGATGT
CGAGTTCGAATACGACAACCCGGCATCCCGCTGCTGGGATGTTGAATTCC
CTGGGATGTCGAATTAATTTCACCCAAATAGATTTAGGAGCCAGTAAAAT
TTAAAAAATGTTGTCATGGCCAAAGTTAAAAGCAGAGATCAGACAAGTCT
CCGAGCCAAAGCTTACACACGGACACATTTGTTGAATATCTTAAATACGG
ATATGGAGAGAAACTTCTCTTGTGGTCGTGGACCAATCAGGTTAAATCCA
GAAATTGTTGCTCCCCACAAAAAGTTTGAACTCGGAAAAAAAGCGAACAT
ATATCTTCCGAGGGCCGCTGTACTTTCTCTCTTCTTTTTCAAATCAAGTG
TGCAAAAAAAGTACTAAAATCTGTACTTTCATTTTCATTTTCAAAAATAA
ACTCGACAACCCGACAACTAGATCGAAAATAAACTCCGAATCCAGAACCC
CACAACCCGGTAACTCCGAACTATCATTTGGTCTCTTCAGTTGCCTATGG
CCGGCCTCTTTTGATCCGGAGAGCCAAGGGCCGATCCCAAAATATGTCCC
ACCTAAATGAGAGACCGGTTTTTTCTTGTGCACCGGTCTCGTCCCAAAAA
CTGTCCCATCACAAAATCTCGGACGGGAGACAAACATTTTTGGGTCTATC
TGACCCACAGTTGTTCGCCTTTGTTTTGCTTTTTGATCCGTTTTGCGTCC
CCCCGTCGATCCTTTTTTGGTCCGCAAAGTTGTCGTGGTTCGGAGATAAC
CATCATTAGATCTCTTCCGTTGCCTGTGGTGGGTCTCTTTTGATGCGGAG
AGCCAAGGGCCGAATAAAAAAAAAAACGCACCAAAAGAAGAGACCCACTT
TTTTTTATGAGCGGGTCTCGTCCCAAAAAAAATACGCAGAGAAAATCTCG
GACGGGAGACAAACATTTTTGGGTCTATCTTATCCACAGTTGTTCGTTTA
GTTTTTTATGAAGCCGTTTTGCACTCGCATTTTAACCTTTTTCTGCCCGT
AAAATTGTCATGGTTCGGAGGTATGGCAGCAGTACCTTCAAACCATCGTC
TTTTACCCTTCCATGACAAAATCCTCCTCTGCCAAGGTCACCCGAAAGGC
TGAACGGTGATCTATTTGTGTGGCCAAAATGGTATAATGTCAACAGCCTG
AATCCCCCGCAGGTCTACGTGGTCTTGACACTGCGAAAGCTCGACACACT
TCGGTTTTTTTTTTGGGGGTTGGGCACATCCCATCCCAAGGCTATCGTGA
TTGCTTGTGAAGGTTCCAGGCATTGGGTTATTCATGGAACTTTTTGCGTC
GTCCCTTTGGGCTTCTACCAGTTACTGGTGTTAATGATTTATACTTCCCA
AGCATGAATCATTTCATTCACACTTTCTGAGGCGGCAATGGGCAGTCACA
ATTCATTCACACTTTCTGAGGCAGCGGCCGCCAGTCACACTTCCTTCACA
CTTTCTGAGACAACGGCAGGAAGTCATACTTGACCCAGACTTTGTTGTGC
AGCAGCTGGCGACCTGGAGAGGAAGGGCGGGGCGAGGGGAGAGGGGCTGG
CAGCCAGGCCTGAAGGTTGTGGTGGGCATCATAGACATGCCAATCTTGAT
CCTTCATCTGGGGTTGCCCTTGGGCCGCGACGGGCACTCACACTTCATTC
ACAATTCACTCACACTTTCTGAGGCGGCGACGGCCAGTCACACTTCACTC
ACACTTTCTGCGGCAGCGGCGGGCAGTCACACTTCACACTTTCTGAGGCA
GCAGCGGGCAGTCAAGGCACTCACACTTGACTCACACTTTGGTGTGCAGC
AGCTGGCGACCTGGAGAGGCAGGGCCGAGGGGGGCTGGCAGCCAGGCCTG
AAGGGGGGCACTTTCTGAGGTGGTGGCGGGTACTCACACTTTACTCACAC
TTTCTGAGGCGGCGACGGGCATTCACACTTCATTCACACTTTCTGAGGCA
GCAGAGGCCAGTCACACTTCATTCACACTTTCCGAGGGGCCAGCGGGCAG
TCACACTTCATTCACACTTTCTGAGGCAGCCGAGGCGCCAGCGGGCAGTA
ACACTTCATTCACACTTTCTTAGGCAGCGGCGGGCAGTCACACTTGACTC
ACACTTTTGCTGCAACTGGCGAGGCGGCGGCAGCAAGTCACACTTCATTC
ACACTTACTGCGGCAGTGGCGGGCAGTCACACTTCATTCACACTTTCTGA
GGCAGCGGCGGGCAGTCACACTTGACTCACACTTTGCTGTGCAGCAGCTG
GCGACCTGGAGAGGTGGGGCCGGGGGGAGGGGCTGGCAGCCAGGCCTGAA
GGAGGGTAATAGCACTTTCTGAGGTGGTGGCGGGCACTCACACTTCACTC
CCACTTTCTGAGGTGGTGGCGGGTACTCACACTTCACTCCCACTTTCTAA
GGCAGCGGCGGGCAGCAGCTGGCGACCTGGAGAGGAGGGGGGGAGGGGGG
GGCTGGCAGCTGGGCCGGGTGGTGGGAAGCTGATTATTTGCGCACATTTT
TTTTGTTTTTAATTGCTCACACTTTAGTCCCACCTTCAGTTTTTGTTCTA
TTTTTTTTCACTCATACTTTACTCCCACTTTCACACTTTATGATCGCCGG
TACGTTAAACGCGTGACTTTTTTCCAAATACTAGATCGATTCAATACTCC
TGGAGTCGCAATATAAAGAGATCGATTGCGTAGCAGTAGTGAATACAATG
GATACGAAATCAAACATATCTTGGGTAATTCACATTCAACTGGTCCAACA
AGAAGAAGGAAACTTTTTGAAGGGTCCATTCGGAACACTTTCACAATCAA
AAAACGATGTTCTTGGTCATACCACATTCCTTCACCTTGAACAACTTCAG
ACGATGGACAATGAATTTTCACCCATAACAAATACAAATGTCGACTGGAG
GAACACTGCTTTCTAGTCTGAGCTGGATCAGCCAGTGATCAGACGCCGTT
TCTGAAGGAACTAAATGCGGCGGCTCTGGTATTATTTGCTACAGTCCACG
AGGGCCTTTGGGCCCATGGCTGAGCGACATATGGCGGCAATCCAATGTAG
CGCTGCAGAGCGCAAAGGGGAGAGGCAGGTCCTTGGCCCACCACCGTCAT
TCAATAATAGAAGCTATACGATTTAATATAATAATGTTTCATTGATACGA
TTGTGGTGGTTTTTGCCATTTTCGGGTTTTTCCGGATTTTTTTATCAATA
TACTACGACGAAACTATTTCAATAACGATCGCGATTATTGAATCGATCTA
AGTATTTGGAAAATCGGGGGTAAAAGTCACGCGTTTCACGTGAAGGCGAT
CTTATTCCCACTTTCCCTTTTTTTCTCCAAAAAAATATATATATACATGT
TTATTTATCTTATTCTGGAACAACATAAAAAATGTATCTTTGGATATATT
CTGGATACAACAATAGTGGGAATAAAGTGTGAGTAAATCAAACTGTGAAC
AAAGTGTGAGTAAAAAAACACTGGGAATTAGTGGTAAAAAACACTTGGCG
CGCTGTCCTATTTTACCTTTGCAATTCACCTCGATGTCCGATTTGCAAGC
CTTAAGTCTTCGTAAATGTCCGACTATGTTGTCCGATTGAATCTGTGGGT
CTGCGCAAATGTCCGATATGGGTCGAATGAATGTCCGATGTTATCCGATA
TCAAAACGGTCTTCAATTTATTTAAAAGAACCTGGCCGGGTAAAGTATTA
TTATGTATTTGTCTTGGAGTTTTGACCTCCTGAGAGGAGAAAAATGATCA
CAAAATTTCCGACCAAGATTGTGTCGAAAGTGCTGGACCAGGTCGGAATC
TCTGTGTAATCACCACAAAAGTAACACTGACTGTGAAGAGCAGGAAGACC
CCGAGGCACCAAGAAGACTATGGCGTGGGAAAGCGCGGGGGCTCATGTGC
TGAAGTAAACATGTTTATATCTTTTGTCCTTCTTCTTGCCTTCTTCCCCG
GTTGGCAGCTGCTGCTTCGGTTGCTCGGGGCCGAGGGCGTGCCGGTGTCC
CCCGCCTACCTCGCCGCCATCTCCCGCGACGACAAGGAGGAGGAGGCTCA
GGGCGCCGCCCTGGAGGAGGGCAGCCACCGCGGCGGCCCCTCCTCCTCGG
CGGCGACCCCCCAGCTCTGGCTGCGGTTTGCTATGGGGGCGACGGGGGCT
GGGGGCGGCGGTTCCTTGGTGGAGGGTGCCTGGTGGGAGGCGCTGCAGAA
GTGCGCTCACGAGGCGATGCGGCAGCACACCGGGCACATCATGATGTGCG
CCTGTGGTTGCTAGTAGGCGGAGTACCCATTACCATTAAATTATAGCTGC
AATGGCTGTGGGAATAACAGGCAGGAATGGAGAATGAAGAGAAAGAAGAA
ACAATTACTGCTGTTCTATTCAGAAACTTCTTCATATGATTTAATTGTGT
TTGTTGCTTGGATGATAGTAGTGGAGGTTGGAGAAGAAAAACTTCTATCA
CACTTTCTTTTTGGCTTCAGTAATTCAGACTTACTGCATTGATAATTACT
ACTTCTATACTTCAACTTAAGAAGCCTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:1427764..1433741-

>mRNA_H-akashiwo_Contig11.41.1 ID=mRNA_H-akashiwo_Contig11.41.1|Name=mRNA_H-akashiwo_Contig11.41.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=459bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1427764..1433741- (Heterosigma akashiwo CCMP452)
CCGCCCAGGGCACGTGGCGGACGGCGTGCTGTACTTCCGGCTGACGGCGG
CACGGGCCCTGGGGCTGACCGAGGCCGCCCTGCACCTGCGCCACGGCGTC
AGCCTCGACGCCATGACCCAGCTGCTGCTTCGGTTGCTCGGGGCCGAGGG
CGTGCCGGTGTCCCCCGCCTACCTCGCCGCCATCTCCCGCGACGACAAGG
AGGAGGAGGCTCAGGGCGCCGCCCTGGAGGAGGGCAGCCACCGCGGCGGC
CCCTCCTCCTCGGCGGCGACCCCCCAGCTCTGGCTGCGGTTTGCTATGGG
GGCGACGGGGGCTGGGGGCGGCGGTTCCTTGGTGGAGGGTGCCTGGTGGG
AGGCGCTGCAGAAGTGCGCTCACGAGGCGATGCGGCAGCACACCGGGCAC
ATCATGATGTGCGCCTGTGGTTGCTAGTAGGCGGAGTACCCATTACCATT
AAATTATAG
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