mRNA_H-akashiwo_Contig11.36.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.36.1
Unique NamemRNA_H-akashiwo_Contig11.36.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:1268486..1270460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size514
Hectar predicted targeting categoryother localisation
Exons8
Cds size510
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.36.1prot_H-akashiwo_Contig11.36.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 1268486..1270458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387075.8930676-CDS-H-akashiwo_Contig11:1268485..12685071681387075.8930676-CDS-H-akashiwo_Contig11:1268485..1268507Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1268486..1268507 -
1681387075.9080565-CDS-H-akashiwo_Contig11:1268649..12687181681387075.9080565-CDS-H-akashiwo_Contig11:1268649..1268718Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1268650..1268718 -
1681387075.9239924-CDS-H-akashiwo_Contig11:1268901..12689751681387075.9239924-CDS-H-akashiwo_Contig11:1268901..1268975Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1268902..1268975 -
1681387075.9410145-CDS-H-akashiwo_Contig11:1269199..12692831681387075.9410145-CDS-H-akashiwo_Contig11:1269199..1269283Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1269200..1269283 -
1681387075.9543674-CDS-H-akashiwo_Contig11:1269659..12697361681387075.9543674-CDS-H-akashiwo_Contig11:1269659..1269736Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1269660..1269736 -
1681387075.9693491-CDS-H-akashiwo_Contig11:1269913..12699851681387075.9693491-CDS-H-akashiwo_Contig11:1269913..1269985Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1269914..1269985 -
1681387075.983645-CDS-H-akashiwo_Contig11:1270220..12702811681387075.983645-CDS-H-akashiwo_Contig11:1270220..1270281Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1270221..1270281 -
1681387075.9917512-CDS-H-akashiwo_Contig11:1270407..12704581681387075.9917512-CDS-H-akashiwo_Contig11:1270407..1270458Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1270408..1270458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.0024755-UTR-H-akashiwo_Contig11:1270458..12704601681387076.0024755-UTR-H-akashiwo_Contig11:1270458..1270460Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 1270459..1270460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.36.1

>prot_H-akashiwo_Contig11.36.1 ID=prot_H-akashiwo_Contig11.36.1|Name=mRNA_H-akashiwo_Contig11.36.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=170bp
MIDVYKPMCKDPECKKKPSFNMLGEKRPKFCAEHKLPGMVDVVKPKCLGI
DCMKRPSFNYEGEKRGLYCGKHRLDGMVDVVKVRCEQDGCTTRASYNELG
KKRGRFCAKHSLPEMVQVENSRCEHSGCHVWPSFNYEGRRKKLYCAEHKL
PGMVRVQKSLNGPDQNDDEN
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mRNA from alignment at H-akashiwo_Contig11:1268486..1270460-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.36.1 ID=mRNA_H-akashiwo_Contig11.36.1|Name=mRNA_H-akashiwo_Contig11.36.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1975bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1268486..1270460- (Heterosigma akashiwo CCMP452)
GAATGATAGATGTTTACAAGCCAATGTGCAAAGACCCGGAGTGTAAGAAA
AAGGTGGGAACTGAAATGTCCTGTGTTCGTTTGAATCAAACTGTGCCTCT
GGGGCGGCTGCAGCACCTCTACATCCACCAAACCTTTCCATTGCTTTCCC
GTCTCTCCGTATGGTGTCTCTGTGGACAGCCGTCCTTCAATATGCTAGGC
GAAAAAAGACCCAAGTTTTGTGCAGAGCACAAACTGCCAGGTAAAAAACA
TTTTTTTTTTTTTTAATAAAAAAAGGGGGGAGAGGAGGCACATACTGTAT
ATATCATTCATTCAACAAATTACCCATGAATGATGTTGTTACTGTGCTTC
CATTACTTTATTTTAATCAGTTGTGTGGAAATGATAATTTCATGTCTTTT
TGTTTATTTGATTTCAAAAGTATGTTTTTTCTCCTTCTTTTTTTTTGTTT
ATGTTGCTGCATTTTCCTACCACAGGGATGGTCGATGTAGTAAAACCCAA
ATGCTTAGGCATAGACTGCATGAAGCGGCCCAGCTTCAACTATGAAGGTT
GCTAGCCTACTTGTTTCGTGTGCACATATGATTGTGTTTGCTGAAAGAGA
GAGAGGAGAGGAATGCGTTGTACTTTCTTCTGTTGTTGTACTATTGTCCA
CAGGCACAGAGCCCTGCTATTCCAATCGCGGAGACAAAGTGTTGTGTTGT
ATTTTCCATCATGATCATGATCAGGCGAAAAAAGGGGGCTATACTGTGGG
AAACATCGGTTGGATGGGATGGTTGATGTTGTAAAAGTACGCTGCGAACA
GGTAGATTTGCATTTCTGTGTGTTTGTAATGCTGGCATATCAGCCGCCAA
AAACTATATCGCCAGAAAACTGGAAAACGACACATTCCAACCGTGGACTG
ATTCGGCTTTCAGTTACTTTGATATTTCATATACATTGACACATAGTAGT
ATACCCAGACACACCGGACACCATATACGCGGGTGATGGCCGCGACTTCA
TCCCTGTTGTTATGAAAAAAAAAGATGGACTGAAATAAAATGAAGTAACA
AAAAACACCGTTGTGATCCTTATTATTCTTATATTTTTAATAACAAAGGC
ATTTTTTTCTCGAGTGAGAACAACCGTACCTTTATCAAAAGTAAATTTTA
CTTTTAACATGATGAACTTTATCTTAGGATGGCTGCACCACCAGAGCTTC
TTATAATGAGCTTGGGAAGAAGCGGGGGCGATTCTGTGCGAAGCACAGTC
TTCCAGAAATGGTAAACCGCTGAAAAAATATTAAAGCTGTTACAGAAGCT
ACATTGAATTGATGAATGAAGTAGAAGAAAAGTTCTGTTGTCAAAAAAAA
TATTATTTTGTTTTATATTCTTCAAATAGTAGCCAAACTGTGCACTACTA
GCAAGAGGAACAACAGCTACCATACCACATGATGATAATATAATAAATTC
ACGCCAAATTACAATGATTTTTTGTTGTAAACCAGGTGCAAGTTGAAAAC
TCAAGGTGTGAACACTCAGGCTGTCATGTGTGGCCGTCTTTTAACTATGA
AGGGCGAAGGTATGCTACTCACAGCTTTGTCTAATCTTCACTTATTGCCC
AGAAATCAAGAACTCAGAAGAATATTTGGGCTTCGTTATTATAATAAAAG
TTCTATATTATTAAAGGTTAGCAAAAAAAGAAATATATTATGTATATTAT
ATTTTTGGTACATTTTTTTTTCACGCAATCCCGATATTGCAGGAAGAAGC
TATACTGTGCAGAGCACAAACTTCCTGGGATGGTACGAGTTCAAAAATCA
CTGAATGGCCCGTGAGTAAACACAGCTCGGAATGATAGTCATGATAAGAG
TGTAGTAATAAAACACAGCCAACACTACTATATTCAGAACTGAATATAGT
GTTCAATATTTTGTTGCTCTCGCCCATGTTGGCTGTGTTTTATTCCAAAA
CAGGGACCAAAATGATGACGAGAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:1268486..1270460-

>mRNA_H-akashiwo_Contig11.36.1 ID=mRNA_H-akashiwo_Contig11.36.1|Name=mRNA_H-akashiwo_Contig11.36.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=510bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1268486..1270460- (Heterosigma akashiwo CCMP452)
ATGATAGATGTTTACAAGCCAATGTGCAAAGACCCGGAGTGTAAGAAAAA
GCCGTCCTTCAATATGCTAGGCGAAAAAAGACCCAAGTTTTGTGCAGAGC
ACAAACTGCCAGGGATGGTCGATGTAGTAAAACCCAAATGCTTAGGCATA
GACTGCATGAAGCGGCCCAGCTTCAACTATGAAGGCGAAAAAAGGGGGCT
ATACTGTGGGAAACATCGGTTGGATGGGATGGTTGATGTTGTAAAAGTAC
GCTGCGAACAGGATGGCTGCACCACCAGAGCTTCTTATAATGAGCTTGGG
AAGAAGCGGGGGCGATTCTGTGCGAAGCACAGTCTTCCAGAAATGGTGCA
AGTTGAAAACTCAAGGTGTGAACACTCAGGCTGTCATGTGTGGCCGTCTT
TTAACTATGAAGGGCGAAGGAAGAAGCTATACTGTGCAGAGCACAAACTT
CCTGGGATGGTACGAGTTCAAAAATCACTGAATGGCCCGGACCAAAATGA
TGACGAGAAT
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