mRNA_H-akashiwo_Contig11.33.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.33.1
Unique NamemRNA_H-akashiwo_Contig11.33.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: A0A7S2UUK0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUK0_9STRA)

HSP 1 Score: 179 bits (453), Expect = 8.600e-54
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 3
Query:   69 KYVVTIFEAKDIVKMDLIGHCDPYFILRYGKVEAKTSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLSEKPFDGWVEFWNHNKPGEKAADMKIRVKYMDPNANVQGGPQNQLGQHWDNVVRVTGRMFR 524
            KYV+T+ E KDI+KMDLIGHCDPYFIL+YG  EA+TSIK+NCSAA+WNE F FQ  +D +        LEIFGYDKD+L SEFFGK  + LS  PFDGW+  WN  + G+K+A+++IR++Y DP  ++    Q +    +D  V++ G++FR
Sbjct:   17 KYVITVVEGKDIMKMDLIGHCDPYFILKYGDYEARTSIKQNCSAALWNERFHFQEIDDIHV-------LEIFGYDKDLLASEFFGKVNIELSRIPFDGWIIMWNEKRSGQKSAEVRIRIEYFDPQDDLFLPTQQRALCCFDGFVKILGQLFR 161          
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: A0A7S2UXQ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXQ8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 8.080e-34
Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   39 IKMAEANDGPKYVVTIFEAKDIVKMDLIGHCDPYFILRYGKVEAKTSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLSEK-PFDGWVEFWN-HNKPGEKAADMKIRVKYMDP 440
            + M   ++ P Y V + EAKDIVKMD+IG+CDPYF++RYG  E +T+ K+N ++ VWNETF F + +DA E       LEI+ YD++   S FFG+  + ++   PF+GWVE WN  +    K A +KI + Y DP
Sbjct:   35 LNMDNDSNTPYYTVKVQEAKDIVKMDMIGYCDPYFVMRYGSQEQRTTTKQNANSGVWNETFRFPVVDDAIEN------LEIYAYDQEANKSGFFGRCMLNIATSVPFEGWVEMWNPQDADHPKGASLKISITYNDP 164          
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: A0A7S2UXI7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXI7_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.210e-33
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 3
Query:   45 MAEANDG-----PKYVVTIFEAKDIVKMDLIGHCDPYFILRYGKVEAKTSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLSEKPFDGWVEFWNHNKPGE-KAADMKIRVKYMDPNA 446
            MAE N       P+Y V I EAK+I+K+DLIGHC PYF+++YG  + +T+IKEN     WNE + F +       D     +EIF + K+M+NSE FGK T+ L+  P  GW E +N  KP + K A++K+ + Y +PNA
Sbjct:    2 MAEDNPASIESLPRYYVDIIEAKEIIKIDLIGHCSPYFVIKYGDQQQQTTIKENIDQGTWNERYTFYV------RDKSVRFIEIFAFSKNMVNSEIFGKVTIDLTHVPLAGWFEMYNTRKPDKPKGANLKLEITYENPNA 135          
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: A0A7S2UTL2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTL2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.460e-20
Identity = 56/142 (39.44%), Postives = 76/142 (53.52%), Query Frame = 3
Query:   27 ILSGIKMAEANDGPKYVVTIFEAKDIVKMDLIGHCDPYFILRYGKVEAKTSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLSEKPFDGWVEFWNHNKPGEKA-ADMKIRVKYMDPNAN 449
            I   + +    +  KY+VT+ EA D+         DPYF+LRYG  + KTS K       WNE FEF+      E+ G    LEIFG+ K  +  EFFGKA++ LSE  FDG VE  + +K G      +KI ++ +DPN N
Sbjct:   55 IFGNMTVQSKEEATKYIVTVHEATDLTNAP---DNDPYFVLRYGNRDLKTSTKGAAKQCTWNEVFEFE------EQAGGGNILEIFGFYKGGMYMEFFGKASILLSES-FDGSVELVDPSKFGSSTNPSVKISLQKIDPNGN 186          
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: A2D7F1_TRIVA (C2 domain containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2D7F1_TRIVA)

HSP 1 Score: 68.2 bits (165), Expect = 4.280e-11
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 3
Query:   78 VTIFEAKDIVKMDLIGHCDPYFILRYGKVEAKTSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLS 344
            + I EAK++ KMD+IG CD Y  L +G    KT +KEN    VWNETF+F +    N+ D     L +   D+DM   E F K T  ++
Sbjct:    5 IKIIEAKNVPKMDIIGSCDAYVALTFGSKRYKTGVKENTLNPVWNETFQFPIQ---NQNDI----LTLIVSDRDMTTDEDFAKLTFHIN 86          
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: A0A0L0TEH0_ALLM3 (C2 domain-containing protein (Fragment) n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TEH0_ALLM3)

HSP 1 Score: 68.2 bits (165), Expect = 3.040e-10
Identity = 38/132 (28.79%), Postives = 65/132 (49.24%), Query Frame = 3
Query:   69 KYVVTIFEAKDIVKMDLIGHCDPYFILRYGKVEAKTSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLSE-------------KPFDGWVEFWNHNKPGEKAADMKIRV 425
            K  V + EA+++   D  G  DP+ IL +GKV+A+T+++      VW+E F+F +         PP  L++  +DKD++ ++F G   VPL+E             +P   W+           + DM++RV
Sbjct:    4 KLRVHVVEARNLAAKDANGFSDPFVILEFGKVKARTTVQYKNLNPVWDEPFDFDVPYP------PPLGLKLTVWDKDLVVNDFLGVCRVPLAEIPQFAPGADLAEEEPDGAWIPLQKRKDNNIISGDMRLRV 129          
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: A0A0L0TF85_ALLM3 (C2 domain-containing protein (Fragment) n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TF85_ALLM3)

HSP 1 Score: 68.2 bits (165), Expect = 5.780e-10
Identity = 38/132 (28.79%), Postives = 65/132 (49.24%), Query Frame = 3
Query:   69 KYVVTIFEAKDIVKMDLIGHCDPYFILRYGKVEAKTSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLSE-------------KPFDGWVEFWNHNKPGEKAADMKIRV 425
            K  V + EA+++   D  G  DP+ IL +GKV+A+T+++      VW+E F+F +         PP  L++  +DKD++ ++F G   VPL+E             +P   W+           + DM++RV
Sbjct:    4 KLRVHVVEARNLAAKDANGFSDPFVILEFGKVKARTTVQYKNLNPVWDEPFDFDVPYP------PPLGLKLTVWDKDLVVNDFLGVCRVPLAEIPQFAPGADLAEEEPDGAWIPLQKRKDNNIISGDMRLRV 129          
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: A0A077WEB3_9FUNG (C2 domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WEB3_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 1.540e-9
Identity = 41/136 (30.15%), Postives = 66/136 (48.53%), Query Frame = 3
Query:   69 KYVVTIFEAKDIVKMDLIGHCDPYFILRYGK-VEAKTSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLSE------KPFDGWVEFWNHNKPGEKAADMKIRVKYMDPNANVQ 455
            K  VT+ EAKD+ K D++GH D Y      K  + KT   EN S+ +WNET  F +     E+     +L I   DKDM +S+  G+  + +S        P D W+    H    +K   + ++V+++  N + +
Sbjct:   12 KLSVTVVEAKDLKKEDVVGHNDVYVEAWLNKNYKQKTGTHENTSSPIWNETLMFPV-----EKGDKDNKLYIRVLDKDMADSDKIGEGKLDISNLYKEGASPIDEWISLPTHFHLSDKGK-VHLKVEFVPENESAR 141          
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: A0A2T7PR64_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PR64_POMCA)

HSP 1 Score: 63.9 bits (154), Expect = 2.950e-8
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 3
Query:   78 VTIFEAKDIVKMDLI----GHCDPYFILRYGKVEAKTSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLSEKPFDGWVEFW 377
            V I EAK+++K D+     G  DPY +L  G  E KT +  N    VWNE FEF +DE     DG   +L++F  DKD    +  GKA+V +S     G V+ W
Sbjct:  303 VHIVEAKELIKADISILGQGKSDPYVVLTVGAQEFKTKVINNTLQPVWNEVFEFIVDE----RDGQFLKLDVF--DKDPNKDDPLGKASVDISTIFKKGNVDEW 400          
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Match: D8QZA7_SELML (Plant synaptotagmin n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QZA7_SELML)

HSP 1 Score: 63.2 bits (152), Expect = 4.930e-8
Identity = 41/148 (27.70%), Postives = 73/148 (49.32%), Query Frame = 3
Query:   69 KYVVTIFEAKDIVKMDLIGHCDPYFILRYGKVEAK---TSIKENCSAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLN-SEFFGKATVPLSEKPFDGWVEFW-------NHNKPGEKAADMKIRVKYM--DPNANVQGGPQNQ 473
            + VV + +AKD++ MDL G  DP+  L    + A+   T   +N    VWNE FEF++++ A ++      L +  +D+D +  SE  G   VP+ E       E+W        + K  +    +++ + YM  D ++  +GG ++Q
Sbjct:  264 RLVVKVVQAKDLLNMDLFGKSDPFAQLFIRPIPARRKRTKTIDNDLNPVWNEVFEFEIEDPATQK------LFVHIFDEDSVQASELIGSTQVPVRELQPGSLTEYWLPLVKDLGNKKENKYRGQVQLELLYMPLDVDSRPEGGTKSQ 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A7S2UUK0_9STRA8.600e-5453.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UXQ8_9STRA8.080e-3444.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UXI7_9STRA1.210e-3343.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UTL2_9STRA4.460e-2039.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A2D7F1_TRIVA4.280e-1140.45C2 domain containing protein n=1 Tax=Trichomonas v... [more]
A0A0L0TEH0_ALLM33.040e-1028.79C2 domain-containing protein (Fragment) n=1 Tax=Al... [more]
A0A0L0TF85_ALLM35.780e-1028.79C2 domain-containing protein (Fragment) n=1 Tax=Al... [more]
A0A077WEB3_9FUNG1.540e-930.15C2 domain-containing protein n=1 Tax=Lichtheimia r... [more]
A0A2T7PR64_POMCA2.950e-839.42Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
D8QZA7_SELML4.930e-827.70Plant synaptotagmin n=2 Tax=Selaginella moellendor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:1226976..1227913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog529818.AMSG_08981T0
PFAMsC2
Model size660
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.14e-12
EggNOG OGsCOG5038@1|root,KOG1012@2759|Eukaryota
Descriptionendoplasmic reticulum-plasma membrane tethering
Cds size489
COG categoryDTZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.9816282-UTR-H-akashiwo_Contig11:1226975..12271021681387077.9816282-UTR-H-akashiwo_Contig11:1226975..1227102Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 1226976..1227102 -
1681387078.0389662-UTR-H-akashiwo_Contig11:1227869..12279131681387078.0389662-UTR-H-akashiwo_Contig11:1227869..1227913Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 1227870..1227913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387078.0005305-CDS-H-akashiwo_Contig11:1227102..12274051681387078.0005305-CDS-H-akashiwo_Contig11:1227102..1227405Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1227103..1227405 -
1681387078.0207148-CDS-H-akashiwo_Contig11:1227569..12277011681387078.0207148-CDS-H-akashiwo_Contig11:1227569..1227701Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1227570..1227701 -
1681387078.0304067-CDS-H-akashiwo_Contig11:1227815..12278691681387078.0304067-CDS-H-akashiwo_Contig11:1227815..1227869Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1227816..1227869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.33.1prot_H-akashiwo_Contig11.33.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 1227103..1227869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.33.1

>prot_H-akashiwo_Contig11.33.1 ID=prot_H-akashiwo_Contig11.33.1|Name=mRNA_H-akashiwo_Contig11.33.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=163bp
MAEANDGPKYVVTIFEAKDIVKMDLIGHCDPYFILRYGKVEAKTSIKENC
SAAVWNETFEFQLDEDANEEDGPPTELEIFGYDKDMLNSEFFGKATVPLS
EKPFDGWVEFWNHNKPGEKAADMKIRVKYMDPNANVQGGPQNQLGQHWDN
VVRVTGRMFRPG*
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mRNA from alignment at H-akashiwo_Contig11:1226976..1227913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.33.1 ID=mRNA_H-akashiwo_Contig11.33.1|Name=mRNA_H-akashiwo_Contig11.33.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=938bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1226976..1227913- (Heterosigma akashiwo CCMP452)
GCAGCAGTTAAATATTATACAAATATATTCTAAGTGGTATCAAAATGGCA GAGGCAAATGATGGACCAAAATATGTGGTCACCATATTCGAGGCAAAGGT ATAATATGGGGAAAATTCTGTAGCTGAACGATCTTATTGGAGTTGTTCGT GTACTGATTACTGCGGCTATTGCCCTCTTTTTTCTTGTTGTCGTACTTTT TGCTTAACACAGGATATTGTGAAAATGGATCTAATTGGTCACTGTGATCC TTACTTCATTCTTCGCTACGGAAAAGTAGAAGCGAAAACGTCGATTAAGG AGAACTGCTCTGCTGCTGTATGGAATGAGACGTTCGAATTTCAGGTAAAA AAAAAGCACCCATCCTGGTGGTGTTGTGCTTGAACAACTCACTCTGAAAA ACAGCTTAATTGTATAAGTGGGCGATTTTCATGTTTTCTATTGGCTTACT CAATACATATTGCCCTAAAGTTCGTATTTCACTTTGTTGCATGTATGCCT GCTGCTAGCTCGACGAAGACGCCAACGAGGAAGATGGGCCCCCCACAGAA TTAGAAATTTTTGGCTATGATAAGGATATGTTGAACTCTGAATTCTTTGG AAAAGCTACTGTTCCTCTGTCAGAGAAGCCATTCGATGGTTGGGTGGAGT TCTGGAACCACAACAAACCAGGAGAGAAAGCTGCAGATATGAAAATCCGA GTCAAGTACATGGATCCTAATGCCAATGTGCAGGGAGGACCTCAGAATCA GCTTGGGCAGCACTGGGACAATGTTGTGAGAGTTACAGGCCGCATGTTCA GACCCGGATAAAGTTTTAAACGAATAGATGGGATGTTTGAGACCTTTTGT TTTTAGGTTCAGACAATCCTTGAATGTGTTCACTCACCTCAAATCTTTAC TGCCGTACTTTGCATGAGTGGTTGATGGGGGCAAAAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:1226976..1227913-

>mRNA_H-akashiwo_Contig11.33.1 ID=mRNA_H-akashiwo_Contig11.33.1|Name=mRNA_H-akashiwo_Contig11.33.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=489bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1226976..1227913- (Heterosigma akashiwo CCMP452)
ATGGCAGAGGCAAATGATGGACCAAAATATGTGGTCACCATATTCGAGGC
AAAGGATATTGTGAAAATGGATCTAATTGGTCACTGTGATCCTTACTTCA
TTCTTCGCTACGGAAAAGTAGAAGCGAAAACGTCGATTAAGGAGAACTGC
TCTGCTGCTGTATGGAATGAGACGTTCGAATTTCAGCTCGACGAAGACGC
CAACGAGGAAGATGGGCCCCCCACAGAATTAGAAATTTTTGGCTATGATA
AGGATATGTTGAACTCTGAATTCTTTGGAAAAGCTACTGTTCCTCTGTCA
GAGAAGCCATTCGATGGTTGGGTGGAGTTCTGGAACCACAACAAACCAGG
AGAGAAAGCTGCAGATATGAAAATCCGAGTCAAGTACATGGATCCTAATG
CCAATGTGCAGGGAGGACCTCAGAATCAGCTTGGGCAGCACTGGGACAAT
GTTGTGAGAGTTACAGGCCGCATGTTCAGACCCGGATAA
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