mRNA_H-akashiwo_Contig11.17.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.17.1
Unique NamemRNA_H-akashiwo_Contig11.17.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.17.1 vs. uniprot
Match: A0A7S4DEH3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEH3_HETAK)

HSP 1 Score: 652 bits (1683), Expect = 1.370e-226
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 1
Query:   28 METNFPPSNELKLSANSVENSVRRIQATWRRLFKTQEKNQSAGGGCLPHPASESCLSDVSGTEEVKEMCLICYENVAENKIKKNICGPDCPLTSCTACLKTHFESIVKQGYDGILKKMTCPGCISMTVPSDAWSPFVDASTLELFQRRAAILLSLQCSGCHSRKDLFIPETELPSNPEQHLKNTLKPLLENEHAGDQEYRLALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLSVRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAAASYQHSDLLTCASCGL 975
            METNFPPSNELKLSANSVENSVRRIQATWRRLFKTQEKNQSAGGGCLPHPASESCLSDVSGTEEVKEMCLICYENVAENKIKKNICGPDCPLTSCTACLKTHFESIVKQGYDGILKKMTCPGCISMTVPSDAWSPFVDASTLELFQRRAAILLSLQCSGCHSRKDLFIPETELPSNPEQHLKNTLKPLLENEHAGDQEYRLALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLSVRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAAASYQHSDLLTCASCGL
Sbjct:    1 METNFPPSNELKLSANSVENSVRRIQATWRRLFKTQEKNQSAGGGCLPHPASESCLSDVSGTEEVKEMCLICYENVAENKIKKNICGPDCPLTSCTACLKTHFESIVKQGYDGILKKMTCPGCISMTVPSDAWSPFVDASTLELFQRRAAILLSLQCSGCHSRKDLFIPETELPSNPEQHLKNTLKPLLENEHAGDQEYRLALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLSVRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAAASYQHSDLLTCASCGL 316          
BLAST of mRNA_H-akashiwo_Contig11.17.1 vs. uniprot
Match: A0A7S3UWB4_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWB4_HETAK)

HSP 1 Score: 288 bits (736), Expect = 1.020e-88
Identity = 136/270 (50.37%), Postives = 180/270 (66.67%), Query Frame = 1
Query:  166 LPHPASESCLSDVSGTEEVKEMCLICYENVAENKIKKNICGPDCPLTSCTACLKTHFESIVKQGYDGILKKMTCPGCISMTVPSDAWSPFVDASTLELFQRRAAILLSLQCSGCHSRKDLFIPETELPSNPEQHLKNTLKPLLENEHAGDQEYRLALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLSVRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAAASYQHSDLLTCASCGL 975
            + H  + S  S    T    E C +C + V ++ I K +CGP CPL +C +C  +HFE IV + YDGIL+KMTCP CISM VPS  W+ F D   L LFQRRAAILLSLQC+GCH+RKDLFI +  LP++ ++H++     L+ +E      +  ALG F  G  NE+ FFQ +    FP +F ++  PD GPW    +P+LLS+RDAR RAVLHLRYLR  PK +T CC+  QCFRCRTG+WH GQTC++V AA +Q+S++LTC +C +
Sbjct:   47 VAHEIATSSSSPEHTTHTTTEECQVCLDEVPQSLILKELCGPKCPLVACKSCASSHFEGIVSESYDGILRKMTCPSCISMEVPSSTWANFTDPEMLALFQRRAAILLSLQCAGCHTRKDLFIQDQSLPTDADKHMEGIETMLVASEKR--DAFSQALGLFTSGSINEEDFFQLICITLFPDQFQSSS-PDEGPWEDVMKPILLSIRDARQRAVLHLRYLRSFPKCSTPCCKRVQCFRCRTGQWHEGQTCSQVLAAQFQNSEVLTCPACAI 313          
BLAST of mRNA_H-akashiwo_Contig11.17.1 vs. uniprot
Match: A0A7S4D641_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D641_HETAK)

HSP 1 Score: 194 bits (494), Expect = 1.590e-55
Identity = 107/299 (35.79%), Postives = 151/299 (50.50%), Query Frame = 1
Query:  121 LFKTQEKNQSAGGGCLPHPASESCLSDVSGTEEVKEM-----------CLICYENVAENKIKKNICGPDCPLTSCTACLKTHFESIVKQGYDGILKKMTCPGCISMTVPSDAWSPFVDASTLELFQRRAAILLSLQCSGCHSRKDLFIPETELPSNPEQHLKNTLKPLLENEHAGDQEYRLALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLSVRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAA---ASYQHSDLLTCASCGL 975
            +F T  +  +  G         + L   SG +EV  M           C IC E ++  +++ + CG DCPL +C  C+  HF+  +  GYDGIL+KMTCP C+  +VP   W P   ++   L+ RRAAILL+LQCSGCH RK +   E E    P   +   +K          +E  +   RF  G+ N+   ++++ T FF  +          PW    +P+L  +RD   RA L+LRYLR +PKV+T CC+A QCFRCRT  WH G TC E+     A     D+L C  C +
Sbjct:   32 VFSTTTRQINENGEKTTRVVPTTTLLPTSGIQEVSVMELKLQPEVQDDCDICLETLSSLELEYSFCGSDCPLKACKECIAKHFKDTISSGYDGILRKMTCPACVKRSVPVSLWGPVCSSNQTTLYSRRAAILLTLQCSGCHERKTILPDEDENQVLPTDGMPKAVK----------EELLMEFERFNDGKINDQELYERISTYFFSFENLP------NPWLVM-QPILQKIRDEGFRAELYLRYLRHYPKVSTICCEAEQCFRCRTEDWHDGMTCEEMRKELEAEQLSDDVLNCPECDI 313          
BLAST of mRNA_H-akashiwo_Contig11.17.1 vs. uniprot
Match: A0A7S3XSF2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSF2_HETAK)

HSP 1 Score: 167 bits (424), Expect = 7.610e-46
Identity = 89/228 (39.04%), Postives = 122/228 (53.51%), Query Frame = 1
Query:  301 LTSCTACLKTHFESIVKQGYDGILKKMTCPGCISMTVPSDAWSPFVDASTLELFQRRAAILLSLQCSGCHSRKDLFIPETELPSNPEQHLKNTLKPLLENEHAGDQEYRLALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLSVRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAA---ASYQHSDLLTCASCGL 975
            L +C  C+  HF+  +  GYDGIL+KMTCP C+  +VP   W P   ++   L+ RRAAILL+LQCSGCH RK +   E E    P   +   +K          +E  +   RF  G+ N+   ++++ T FF  +          PW    +P+L  +RD   RA L+LRYLR +PKV+T CC+A QCFRCRT  WH G TC E+     A     D+L C  C +
Sbjct:   40 LIACKECIAKHFKDTISSGYDGILRKMTCPACVKRSVPVSLWGPVCSSNQTTLYSRRAAILLTLQCSGCHERKTILPDEDENQVLPTDGMPKAVK----------EELLMEFERFNDGKINDQELYERISTYFFSFENLP------NPWLVM-QPILQKIRDEGFRAELYLRYLRHYPKVSTICCEAEQCFRCRTEDWHDGMTCEEMRKELEAEQLSDDVLNCPECDI 250          
BLAST of mRNA_H-akashiwo_Contig11.17.1 vs. uniprot
Match: A0A835YLL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.610e-32
Identity = 87/231 (37.66%), Postives = 118/231 (51.08%), Query Frame = 1
Query:  292 DCPLTSCTACLKTHFESIVKQGYDGILKKMTCPGCISMTVPSDAWSPFVDASTLELFQRRAAILLSLQCSGCHSRKDL--FIPETELPSNPEQHLKNTLKPLLENEHAGDQEYRLALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLSVRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAAASYQHSDLL-TCASCGL 975
            D    +C  CL  +F +IV +GY+G+  +M CP C  + VP   WS  V+  T  LF++RAAILL+LQCS CH+R  L  F   +   ++ E+ L   L   L    AG     + + R     D + A    +     P       +  A  WA   R VL  ++D   RAVLH R+L  HP V T CC A  C+RCR G  H GQTCAE  AA+Y   +L+ TC +C +
Sbjct:  116 DSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCPFC-PLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLMEFAHYSAGSADFERALPGALAADLHLFEAGAISATVFVERIAAAVDGDIAQPCAVTAEQDPELNHVVPETTAKVWALM-REVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSI 344          
BLAST of mRNA_H-akashiwo_Contig11.17.1 vs. uniprot
Match: A0A482RY51_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY51_9ARCH)

HSP 1 Score: 81.6 bits (200), Expect = 1.740e-13
Identity = 67/221 (30.32%), Postives = 97/221 (43.89%), Query Frame = 1
Query:  334 FESIVKQGYDGILKKMTCPGCIS------MTVPSDAWSPFVDASTLELFQRRAAILLSLQCSGCHSRKDLFIP-ETELPSNPEQHLKNTLKPLLENEHAGDQEYRLALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLSVRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAAASYQHSDLLTCASCGL 975
             ES ++  Y G    + CP  +         +P   W   + A     +   A  LL+  C GCHS K L +  E+   +N  Q L   L     N      E   A+  +  G    D F++ L   FF  +  +  D +A  W   +  +L  + D   RA LHLRYLR+ P++ T CC    CFRC+   +H G+TC E    S  HS ++ C SCG+
Sbjct:    1 MESKIQSAYMGTCPIIHCPSTMHHKSKKRRVIPYTKWKEALPAEISTKYNSLANSLLAFLCGGCHSLKSLDLGHESNRSANCYQQLARNLSDSAGNCKMAALE--TAVESYCLGGILVDEFYEDLLKSFFT-RLTSLNDAEA--WEQFS-DLLRIIPDPERRANLHLRYLRDRPRIKTLCCSREHCFRCKIKDFHEGKTCMENTE-SLDHS-IVCCPSCGI 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S4DEH3_HETAK1.370e-226100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UWB4_HETAK1.020e-8850.37Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4D641_HETAK1.590e-5535.79Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XSF2_HETAK7.610e-4639.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YLL2_9STRA2.610e-3237.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482RY51_9ARCH1.740e-1330.32Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:533880..535041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6K5
Model size977
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.44e-27
EggNOG OGs2EGD3@1|root,2SAJF@2759|Eukaryota
Cds size948
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.6868293-CDS-H-akashiwo_Contig11:533879..5344761681387077.6868293-CDS-H-akashiwo_Contig11:533879..534476Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 533880..534476 -
1681387077.7005794-CDS-H-akashiwo_Contig11:534663..5350141681387077.7005794-CDS-H-akashiwo_Contig11:534663..535014Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 534664..535014 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.71113-UTR-H-akashiwo_Contig11:535014..5350411681387077.71113-UTR-H-akashiwo_Contig11:535014..535041Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 535015..535041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.17.1prot_H-akashiwo_Contig11.17.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 533880..535014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.17.1

>prot_H-akashiwo_Contig11.17.1 ID=prot_H-akashiwo_Contig11.17.1|Name=mRNA_H-akashiwo_Contig11.17.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=316bp
METNFPPSNELKLSANSVENSVRRIQATWRRLFKTQEKNQSAGGGCLPHP
ASESCLSDVSGTEEVKEMCLICYENVAENKIKKNICGPDCPLTSCTACLK
THFESIVKQGYDGILKKMTCPGCISMTVPSDAWSPFVDASTLELFQRRAA
ILLSLQCSGCHSRKDLFIPETELPSNPEQHLKNTLKPLLENEHAGDQEYR
LALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLS
VRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAA
ASYQHSDLLTCASCGL
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mRNA from alignment at H-akashiwo_Contig11:533880..535041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.17.1 ID=mRNA_H-akashiwo_Contig11.17.1|Name=mRNA_H-akashiwo_Contig11.17.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1162bp|location=Sequence derived from alignment at H-akashiwo_Contig11:533880..535041- (Heterosigma akashiwo CCMP452)
CAGAAAACTCTTGGAATCAAGAGAAAAATGGAAACCAATTTTCCACCCTC CAACGAACTGAAGCTTTCAGCTAATAGTGTAGAGAACTCAGTTCGCAGAA TTCAAGCGACTTGGAGGAGGTTATTCAAAACTCAAGAAAAAAATCAATCT GCGGGAGGTGGTTGTCTGCCTCACCCAGCAAGTGAGAGTTGTCTCTCAGA TGTGTCTGGAACGGAAGAAGTCAAAGAAATGTGCTTGATCTGCTACGAAA ATGTAGCAGAAAATAAGATCAAGAAGAATATCTGTGGACCTGATTGTCCA CTGACCTCTTGTACTGCATGCCTGAAAACCCACTTTGAAAGTATCGTAAA GCAAGGTTACGATGGAATCCTCAAAAAGGTGTGTAGGACATGCTACAGTT ATTTGTCCAATCGAATGTTTTTTTTTTAATAACACAAAACAAAATGCATA CTGCCCACCTAGTAGATAAAGAAGCCCACCAGATCTATACAGCAGCCCAG ATATTTTCTCCCCCCTGCTCCATCCTCATTTCTGCATTTCTGCTACTCTT TGTTTTTGGTGGCAGATGACTTGCCCGGGCTGCATCTCGATGACTGTACC TTCTGATGCTTGGTCACCATTTGTTGATGCCAGCACGCTCGAGCTCTTCC AGCGGCGGGCTGCCATCCTGCTTTCCCTGCAGTGCTCTGGCTGCCACAGC CGCAAGGACTTGTTCATCCCAGAGACTGAGCTGCCCAGCAACCCAGAGCA GCACCTGAAAAACACATTGAAACCGCTGCTGGAGAACGAACACGCTGGGG ACCAGGAGTACCGGTTGGCATTGGGGCGGTTTGTGCGAGGCGAGGATAAC GAGGATGCGTTCTTCCAGCAGCTGCGCACGCGCTTCTTCCCTGGGAAGTT TGCCGCGGCCGAAGACCCAGACGCGGGGCCCTGGGCGGCGGCGGCGCGCC CGGTGCTGCTCTCCGTCCGTGACGCGCGTGCGCGGGCAGTGCTGCACCTG CGGTACCTGCGGGAGCACCCCAAGGTGACCACGGGCTGCTGCCAAGCCAC CCAGTGCTTCCGCTGCCGCACGGGCCGCTGGCACGCGGGGCAGACCTGCG CGGAGGTTGCCGCCGCCTCCTACCAGCACTCAGACCTGCTCACCTGTGCG TCCTGCGGCCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:533880..535041-

>mRNA_H-akashiwo_Contig11.17.1 ID=mRNA_H-akashiwo_Contig11.17.1|Name=mRNA_H-akashiwo_Contig11.17.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=948bp|location=Sequence derived from alignment at H-akashiwo_Contig11:533880..535041- (Heterosigma akashiwo CCMP452)
ATGGAAACCAATTTTCCACCCTCCAACGAACTGAAGCTTTCAGCTAATAG
TGTAGAGAACTCAGTTCGCAGAATTCAAGCGACTTGGAGGAGGTTATTCA
AAACTCAAGAAAAAAATCAATCTGCGGGAGGTGGTTGTCTGCCTCACCCA
GCAAGTGAGAGTTGTCTCTCAGATGTGTCTGGAACGGAAGAAGTCAAAGA
AATGTGCTTGATCTGCTACGAAAATGTAGCAGAAAATAAGATCAAGAAGA
ATATCTGTGGACCTGATTGTCCACTGACCTCTTGTACTGCATGCCTGAAA
ACCCACTTTGAAAGTATCGTAAAGCAAGGTTACGATGGAATCCTCAAAAA
GATGACTTGCCCGGGCTGCATCTCGATGACTGTACCTTCTGATGCTTGGT
CACCATTTGTTGATGCCAGCACGCTCGAGCTCTTCCAGCGGCGGGCTGCC
ATCCTGCTTTCCCTGCAGTGCTCTGGCTGCCACAGCCGCAAGGACTTGTT
CATCCCAGAGACTGAGCTGCCCAGCAACCCAGAGCAGCACCTGAAAAACA
CATTGAAACCGCTGCTGGAGAACGAACACGCTGGGGACCAGGAGTACCGG
TTGGCATTGGGGCGGTTTGTGCGAGGCGAGGATAACGAGGATGCGTTCTT
CCAGCAGCTGCGCACGCGCTTCTTCCCTGGGAAGTTTGCCGCGGCCGAAG
ACCCAGACGCGGGGCCCTGGGCGGCGGCGGCGCGCCCGGTGCTGCTCTCC
GTCCGTGACGCGCGTGCGCGGGCAGTGCTGCACCTGCGGTACCTGCGGGA
GCACCCCAAGGTGACCACGGGCTGCTGCCAAGCCACCCAGTGCTTCCGCT
GCCGCACGGGCCGCTGGCACGCGGGGCAGACCTGCGCGGAGGTTGCCGCC
GCCTCCTACCAGCACTCAGACCTGCTCACCTGTGCGTCCTGCGGCCTG
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