mRNA_H-akashiwo_Contig11.123.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.123.1
Unique NamemRNA_H-akashiwo_Contig11.123.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: A0A671KNM3_9TELE (CDGSH iron-sulfur domain-containing protein 1-like n=2 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671KNM3_9TELE)

HSP 1 Score: 95.9 bits (237), Expect = 2.020e-22
Identity = 45/65 (69.23%), Postives = 49/65 (75.38%), Query Frame = 2
Query:  140 VNLTIQKDNPKVVDKVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLIIE 334
            VNL +QKDNPKVV     ED+     D K V CRCW+SKKFPYCDGAHAKHN ETGDN GPLII+
Sbjct:   44 VNLDLQKDNPKVVHAFDIEDL-----DDKAVYCRCWRSKKFPYCDGAHAKHNQETGDNVGPLIIK 103          
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: A0A5A9PBN8_9TELE (CDGSH iron-sulfur domain-containing protein 1 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PBN8_9TELE)

HSP 1 Score: 95.9 bits (237), Expect = 2.020e-22
Identity = 53/109 (48.62%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    8 SPHNIIDKMDALKEIDPKVIMSIAAICVSMAIMMATAFKKPPALVNLTIQKDNPKVVDKVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLIIE 334
            S  N + K + +  +   V  +   I +   I       KP   VNL +QKDNPKVV     EDI       K V CRCW+SKKFPYCDGAHAKHN ETGDN GPLII+
Sbjct:    2 SASNTLSKAEIITAVSVSVGAAAVGILIYRTICKKDTCVKPK--VNLDLQKDNPKVVHAFDIEDI-----GDKAVYCRCWRSKKFPYCDGAHAKHNQETGDNVGPLIIK 103          
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: A0A383VGD3_TETOB (ZnF_CDGSH domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VGD3_TETOB)

HSP 1 Score: 94.7 bits (234), Expect = 2.160e-22
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 2
Query:  140 VNLTIQKDNPKVVDKVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLIIE 334
            +N  I+KD  KVVD + +ED+ K     K V CRCWKSKKFPYCDGAHAKHNTETGDN GPLI+E
Sbjct:   10 INAEIKKDVDKVVDMLKAEDLPK-----KAVFCRCWKSKKFPYCDGAHAKHNTETGDNVGPLIVE 69          
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: A0A8J2KT97_9HEXA (CDGSH iron-sulfur domain-containing protein 2 homolog n=2 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KT97_9HEXA)

HSP 1 Score: 96.3 bits (238), Expect = 2.950e-22
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 2
Query:  122 KKPPALVNLTIQKDNPKVVDKVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLII 331
            ++P + VNL+++KD+PKVVD V  E+I       K V CRCW+SKKFPYCDGAH KHN ETGDN GPLII
Sbjct:   65 EEPKSKVNLSVKKDSPKVVDSVDIEEI-----GSKKVFCRCWRSKKFPYCDGAHTKHNEETGDNVGPLII 129          
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: A0A5N5PQ28_PANHP (ZnF_CDGSH domain-containing protein n=4 Tax=Siluroidei TaxID=1489793 RepID=A0A5N5PQ28_PANHP)

HSP 1 Score: 94.7 bits (234), Expect = 5.710e-22
Identity = 48/77 (62.34%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  113 TAFKKPPAL---VNLTIQKDNPKVVDKVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLIIE 334
            T F K  A+   VNL +QKDNPKVV     ED+       K V CRCW+SKKFPYCDGAHAKHN ETGDN GPLII+
Sbjct:   32 TLFSKAKAVKPKVNLDLQKDNPKVVHAFDIEDL-----GDKAVYCRCWRSKKFPYCDGAHAKHNQETGDNVGPLIIK 103          
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: A0A3B1KGQ7_ASTMX (CDGSH iron-sulfur domain-containing protein 1 n=4 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1KGQ7_ASTMX)

HSP 1 Score: 94.4 bits (233), Expect = 8.060e-22
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 2
Query:   23 IDKMDALKEIDPKVIMSIAAICVSMAIMM-ATAFKKPPAL---VNLTIQKDNPKVVDKVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLIIE 334
            + + +A+ + D    +S+ A   ++ +++  T F K   +   VNL IQKDNPKVV     ED+       K V CRCW+SKKFPYCDGAHAKHN ETGDN GPLII+
Sbjct:    1 MSRSNAMSKADLIAAISVTAGAAAVGLLVYKTFFSKGKCVKPKVNLDIQKDNPKVVHAFDIEDL-----GDKAVYCRCWRSKKFPYCDGAHAKHNQETGDNVGPLIIK 103          
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: F7DRZ5_MONDO (ZnF_CDGSH domain-containing protein n=2 Tax=Didelphinae TaxID=126287 RepID=F7DRZ5_MONDO)

HSP 1 Score: 94.4 bits (233), Expect = 8.290e-22
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  122 KKPPALVNLTIQKDNPKVVDKVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLIIE 334
            K+  ++VNL+IQKDNPKVV     ED+ +     K V CRCW+SKKFP+CDGAH KHN ETGDN GPLII+
Sbjct:   39 KRGKSMVNLSIQKDNPKVVHAFDMEDLGE-----KAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIK 104          
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: UPI000C76A43D (CDGSH iron-sulfur domain-containing protein 2 homolog n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76A43D)

HSP 1 Score: 95.1 bits (235), Expect = 1.310e-21
Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  131 PALVNLTIQKDNPKVVDKVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLIIECS 340
            PA VN  IQ D PKVVD +  EDI +     K V+CRCWKSKKFPYCDG HAKHN ETGDN GP+I++ S
Sbjct:   85 PARVNSCIQMDCPKVVDTIDIEDISE-----KAVLCRCWKSKKFPYCDGTHAKHNKETGDNVGPIIVKKS 149          
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: A0A835YNQ0_9STRA (CDGSH iron sulfur domain-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.700e-21
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 2
Query:   59 KVIMSIAAICVSMAIMMATAFKKPPALVNLTIQKDNPKVVDKVSS---EDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLII 331
            K+I+++ ++ V++ + +  +        N +IQ DNPKVVDKV     E++    K+G  V CRCWKSK FPYCDG+HA HN ETGDN GPLII
Sbjct:   12 KIIVAVLSMAVAILLHLRRSASTSGNRCNHSIQLDNPKVVDKVGFTEIEELPSCKKNGTAVFCRCWKSKNFPYCDGSHATHNRETGDNVGPLII 105          
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Match: A0A8B7G8P8_MICMU (CDGSH iron-sulfur domain-containing protein 1 isoform X2 n=5 Tax=Euarchontoglires TaxID=314146 RepID=A0A8B7G8P8_MICMU)

HSP 1 Score: 93.2 bits (230), Expect = 1.920e-21
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  134 ALVNLTIQKDNPKVVDKVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLIIE 334
            A+VNL IQKDNPKVV     ED+       K V CRCW+SKKFP+CDGAH KHN ETGDN GPLII+
Sbjct:   36 AMVNLHIQKDNPKVVHAFDMEDL-----GDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIK 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A671KNM3_9TELE2.020e-2269.23CDGSH iron-sulfur domain-containing protein 1-like... [more]
A0A5A9PBN8_9TELE2.020e-2248.62CDGSH iron-sulfur domain-containing protein 1 n=1 ... [more]
A0A383VGD3_TETOB2.160e-2267.69ZnF_CDGSH domain-containing protein n=1 Tax=Tetrad... [more]
A0A8J2KT97_9HEXA2.950e-2262.86CDGSH iron-sulfur domain-containing protein 2 homo... [more]
A0A5N5PQ28_PANHP5.710e-2262.34ZnF_CDGSH domain-containing protein n=4 Tax=Siluro... [more]
A0A3B1KGQ7_ASTMX8.060e-2248.15CDGSH iron-sulfur domain-containing protein 1 n=4 ... [more]
F7DRZ5_MONDO8.290e-2261.97ZnF_CDGSH domain-containing protein n=2 Tax=Didelp... [more]
UPI000C76A43D1.310e-2164.29CDGSH iron-sulfur domain-containing protein 2 homo... [more]
A0A835YNQ0_9STRA1.700e-2148.94CDGSH iron sulfur domain-containing protein 1 n=1 ... [more]
A0A8B7G8P8_MICMU1.920e-2165.67CDGSH iron-sulfur domain-containing protein 1 isof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:5360486..5361745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7955.ENSDARP00000101688
Preferred namecisd1
PFAMszf-CDGSH
Model size558
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.67e-24
EggNOG OGsKOG3461@1|root,KOG3461@2759|Eukaryota,3A03G@33154|Opisthokonta,3BPBI@33208|Metazoa,3D690@33213|Bilateria,48EPD@7711|Chordata,49BFD@7742|Vertebrata,4A4C7@7898|Actinopterygii
DescriptionZgc 110843
Cds size315
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.123.1prot_H-akashiwo_Contig11.123.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 5360698..5361714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387080.8372622-UTR-H-akashiwo_Contig11:5360485..53606971681387080.8372622-UTR-H-akashiwo_Contig11:5360485..5360697Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 5360486..5360697 -
1681387080.904756-UTR-H-akashiwo_Contig11:5361714..53617451681387080.904756-UTR-H-akashiwo_Contig11:5361714..5361745Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 5361715..5361745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387080.848449-CDS-H-akashiwo_Contig11:5360697..53607451681387080.848449-CDS-H-akashiwo_Contig11:5360697..5360745Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 5360698..5360745 -
1681387080.8579082-CDS-H-akashiwo_Contig11:5360980..53610191681387080.8579082-CDS-H-akashiwo_Contig11:5360980..5361019Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 5360981..5361019 -
1681387080.869396-CDS-H-akashiwo_Contig11:5361196..53612951681387080.869396-CDS-H-akashiwo_Contig11:5361196..5361295Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 5361197..5361295 -
1681387080.879703-CDS-H-akashiwo_Contig11:5361491..53615541681387080.879703-CDS-H-akashiwo_Contig11:5361491..5361554Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 5361492..5361554 -
1681387080.8932984-CDS-H-akashiwo_Contig11:5361648..53617141681387080.8932984-CDS-H-akashiwo_Contig11:5361648..5361714Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 5361649..5361714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.123.1

>prot_H-akashiwo_Contig11.123.1 ID=prot_H-akashiwo_Contig11.123.1|Name=mRNA_H-akashiwo_Contig11.123.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=105bp
MDALKEIDPKVIMSIAAICVSMAIMMATAFKKPPALVNLTIQKDNPKVVD
KVSSEDIKKAAKDGKLVMCRCWKSKKFPYCDGAHAKHNTETGDNTGPLII
ECSN*
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mRNA from alignment at H-akashiwo_Contig11:5360486..5361745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.123.1 ID=mRNA_H-akashiwo_Contig11.123.1|Name=mRNA_H-akashiwo_Contig11.123.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1260bp|location=Sequence derived from alignment at H-akashiwo_Contig11:5360486..5361745- (Heterosigma akashiwo CCMP452)
ATAATATTCACCACATAATATAATCGACAAAATGGACGCCCTCAAGGAAA TTGACCCGAAAGTGATTATGTCCATTGCAGCCATCTGTGTCAGTATGGTG AGTTGAAAATGAACCGTTTTTCAATTCGGGCTCTTTAAGTATTCATTGAA CCTTACAAATGCTGGGGAAACTTTTGCCGTCGTCTCTGCAGGCAATCATG ATGGCGACTGCTTTCAAAAAGCCTCCAGCTCTGGTGAATTTGACCATTCA AAAGGTGATCAGTGCGTTTTAATATATCTGAATAATCGCATTCTATATAT TATCTCAGCCCAAAAAATAGCTTCACCTGCATTTTTGGACTCTTACAGAT CGTATTATATTCAAAACCTTAATTTCTCTTTGGCCCTTACATACATCATC TCCAAAACCCTTATTCACTTATCTGGCATGCACTGTTGATACCCGAAAAG GACAACCCTAAAGTGGTTGATAAGGTTTCAAGTGAAGACATAAAAAAAGC GGCTAAAGATGGGAAGTTGGTCATGTGCAGATGCTGGAAATCGAAGAAGG TAGAACTATGTATTCTAAGTGCAGTGTTTTTAAGTTTTTTTTTTTTTTTT TTTTTTTTAATTTGTATTCATTTATTTTAATGTACGTTTGCAACTGTTGA TTTATGCCAACGAATTGAAGTGGTTACCAAATAAAAAATACCTCATATCC CTTTCCCCTGTTTTGGATGTGCGCAGTTTCCCTATTGCGATGGCGCACAC GCAAAGCACAACACGGTGAGCGATAACTTTATCCCAGCAGGGTGCAACAG TTTTGTTCCAATAGCTCTACGCACCGGCCATGTATGGTTGGCTGATCATC CCACATTCATGCGCATTGATGTTCCTATTTCAATCTACGCGTTGCGAAGC CTGCAAACATGTATAAGTATTGATTATTTGCTTGTTGTCTCTTCACGATT GACCATCGTGTTGCATATGGTTCTTCCAATAAAATACAACATATTAACAG GAAACTGGTGATAACACTGGGCCTCTTATCATTGAGTGCTCTAACTAAGA ACGAAGCCACATTATGAGGCAGTAGTTAACCCAGACAAGTTAGATTTCCT GTGTTATTAATGAATTAATAATAATAATTACTACCAGCAAGCAAGCAGCC ATTGATTATTCAAGAGGCACCCATGACGAGGAGTATAGTAGTGGAATTAT ATCTACATAAAACTAATGCGTAATAATAACATAGTCTATGTTATAGTATA TAAAAACCTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:5360486..5361745-

>mRNA_H-akashiwo_Contig11.123.1 ID=mRNA_H-akashiwo_Contig11.123.1|Name=mRNA_H-akashiwo_Contig11.123.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=315bp|location=Sequence derived from alignment at H-akashiwo_Contig11:5360486..5361745- (Heterosigma akashiwo CCMP452)
ATGGACGCCCTCAAGGAAATTGACCCGAAAGTGATTATGTCCATTGCAGC
CATCTGTGTCAGTATGGCAATCATGATGGCGACTGCTTTCAAAAAGCCTC
CAGCTCTGGTGAATTTGACCATTCAAAAGGACAACCCTAAAGTGGTTGAT
AAGGTTTCAAGTGAAGACATAAAAAAAGCGGCTAAAGATGGGAAGTTGGT
CATGTGCAGATGCTGGAAATCGAAGAAGTTTCCCTATTGCGATGGCGCAC
ACGCAAAGCACAACACGGAAACTGGTGATAACACTGGGCCTCTTATCATT
GAGTGCTCTAACTAA
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