mRNA_H-akashiwo_Contig11.117.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: B5YNE9_THAPS (AP complex subunit sigma n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE9_THAPS) HSP 1 Score: 251 bits (641), Expect = 7.580e-83 Identity = 126/179 (70.39%), Postives = 150/179 (83.80%), Query Frame = 1
Query: 1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGSNY 537
MIKG+IIVNN GK RL KF+ V E+++ SV+RRV+QQV+ RPD+FCNYLEGS+PE+GE KLIYRHYATLYF+FAVD+QESDLGILDLIQVFVEALDK FENVCELDLIFHSD+VHY+LDEIVMGGMV+ETNINSI+ A+NDQ R+H+ SM+ V + SDS +S G G N+
Sbjct: 1 MIKGIIIVNNSGKPRLVKFYQNV--FGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMKKV--QQSDSVDAISTKLGAGRNW 175
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A835ZDS3_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS3_9STRA) HSP 1 Score: 249 bits (637), Expect = 3.530e-82 Identity = 122/157 (77.71%), Postives = 142/157 (90.45%), Query Frame = 1
Query: 1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRI 471
MIK V+IVNNHGK RL KF+ TV E+ + SV+RR++QQVA RPD FCNYLEGSIPE+GEGTKLIYRHYATLYFIFAVD+QESDLGILDLIQVFVEALDK FENVCELDLIFHSD+VHYVLDE++MGGMV+ETNIN+++ AVNDQS+LH+ SM++
Sbjct: 1 MIKAVVIVNNHGKPRLVKFYKTVTD--EDAQQSVIRRIFQQVAQRPDNFCNYLEGSIPEWGEGTKLIYRHYATLYFIFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEMIMGGMVLETNINAVLSAVNDQSKLHAASMKV 155
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: D7FQE5_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE5_ECTSI) HSP 1 Score: 249 bits (636), Expect = 6.550e-82 Identity = 121/157 (77.07%), Postives = 143/157 (91.08%), Query Frame = 1
Query: 1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRI 471
MI+GVIIVNNHGK RL KF+ TV + EE + SV++R++QQVA RPD+FCNYLEG IPE+GEGTKLIYRHYATLYF+FAVD+QESDLGILDL+QVFVEALDK FENVCELDLIFHSDKVHYVLDEI+MGGMV+ETNIN I++A+NDQ+RLH+ S ++
Sbjct: 1 MIRGVIIVNNHGKPRLVKFYQTV--VGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKV 155
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA) HSP 1 Score: 243 bits (621), Expect = 8.980e-80 Identity = 121/179 (67.60%), Postives = 145/179 (81.01%), Query Frame = 1
Query: 1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGSNY 537
MIKG++IVNNHGK RL KF+ +V SEE + SV+RRV+QQVA RPD+FCNYLEG IPE+G KLIYRHYATLYF+FAVD+QESDLGILDLIQVFVEALDK FENVCELDLIFHSD+VHYVLDEIVMGGMV+ETNINS++ A+ DQ+++H S+ + S + G G+N+
Sbjct: 1 MIKGILIVNNHGKPRLVKFYQSVT--SEETQQSVIRRVFQQVAQRPDSFCNYLEGIIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSSLSQASKGKEGSADAIKTQLGSGTNW 177
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A1Z5JTJ4_FISSO (AP complex subunit sigma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTJ4_FISSO) HSP 1 Score: 239 bits (611), Expect = 3.300e-78 Identity = 121/174 (69.54%), Postives = 147/174 (84.48%), Query Frame = 1
Query: 1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPG 522
MIKG+IIVNNHGK RL KF+ +VE SE + SV+RRV+QQVA RPD+FCNYLEG+IPE+G+ KLIYRHYATL+F+FAVD+QESDLGILDLIQVFVE+LD+ FE+VCELDLIFHSD+VHYVLDEIVMGGMV+ETNI+S++ AV DQ RLH S+ V EA++S + + G
Sbjct: 1 MIKGIIIVNNHGKPRLVKFYQSVE--SESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDSLTRV--EATESASHIQQRLG 170
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A6U4LCC0_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4LCC0_9STRA) HSP 1 Score: 239 bits (610), Expect = 4.390e-78 Identity = 122/177 (68.93%), Postives = 146/177 (82.49%), Query Frame = 1
Query: 1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGS 531
MIKG++I+NNHGK RL KF+ +V S EQ+ +V+RRVYQQV RPD+FCNYLEGSIPE+GE TK+IYRHYATLYF+FAVD QESDLGILDLIQVFVEALDK FENVCELD+IF SD+V+YVLDEIVMGGMV+ETNIN+I+ A+ DQ L+ +S+R T A SR S G+G+
Sbjct: 1 MIKGILIINNHGKPRLTKFYQSV---SHEQQQAVIRRVYQQVVNRPDSFCNYLEGSIPEWGENTKIIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDIIFKSDRVNYVLDEIVMGGMVLETNINAILQAIRDQDHLNDNSLR--TGAAGQSRSVDSIREGLGA 172
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: K0SBT8_THAOC (Clat_adaptor_s domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBT8_THAOC) HSP 1 Score: 244 bits (624), Expect = 7.520e-78 Identity = 124/179 (69.27%), Postives = 148/179 (82.68%), Query Frame = 1
Query: 1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGSNY 537
MIKG+IIVNN GK RL KF+ V EE++ SV+RRV+QQV+ RPD+FCNYLEGS+PE+GE KLIYRHYATLYF+FAVDAQESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVH++LDEIVMGGMV+ETNIN+I+ A++DQ R+H SM+ T ++S +S G G N+
Sbjct: 174 MIKGIIIVNNSGKPRLVKFYQNV--FGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMK--TKGPNESVDLISTKLGAGRNW 348
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: W7T2Y9_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y9_9STRA) HSP 1 Score: 237 bits (605), Expect = 2.530e-77 Identity = 121/176 (68.75%), Postives = 142/176 (80.68%), Query Frame = 1
Query: 1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIG 528
MI+GVIIVNNHG+ RL K + +V + EE + SV+R+V+QQVA RPD+FCNYL+GSIPE+GEG KLIYRHYATLYF+FAVD QESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVHYVLDEI+M GMV+ETNI I+ +NDQ+RLH+ S + T+ R P IG
Sbjct: 1 MIRGVIIVNNHGRPRLVKLYQSV--IGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTK------VRTPTIG 168
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A7S2V317_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V317_9STRA) HSP 1 Score: 234 bits (597), Expect = 8.990e-77 Identity = 112/129 (86.82%), Postives = 125/129 (96.90%), Query Frame = 1
Query: 145 FCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGS 531
FCNYLEGSIPE+G+ KL+YRHYATLYF+FAVD+QESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMV+ETNINS+MVA+ DQ++LHS SMRIVTTEASD+RKRVSRPPG+G+
Sbjct: 1 FCNYLEGSIPEWGDSCKLVYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNINSVMVAITDQNKLHSQSMRIVTTEASDARKRVSRPPGVGN 129
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA) HSP 1 Score: 233 bits (595), Expect = 8.130e-76 Identity = 118/171 (69.01%), Postives = 141/171 (82.46%), Query Frame = 1
Query: 1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMR--IVTTEASDSRKRV 507
MIKGVIIVNN GK RL KF+ +V SEE + V+RRV++Q++ RPD FCNYLEG +PE+G KLIYRHYATLYF+FAVDAQESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVHYVLDEIVMGGMV+ETNI SI+ A+ DQ +LH+ S++ + T+ R+++
Sbjct: 1 MIKGVIIVNNQGKPRLAKFYQSVT--SEEIQQRVIRRVFEQISSRPDNFCNYLEGIVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKAKVDKTDGLSHREKI 169 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig11.117.1 >prot_H-akashiwo_Contig11.117.1 ID=prot_H-akashiwo_Contig11.117.1|Name=mRNA_H-akashiwo_Contig11.117.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=180bp MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCback to top mRNA from alignment at H-akashiwo_Contig11:5232909..5233448- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig11.117.1 ID=mRNA_H-akashiwo_Contig11.117.1|Name=mRNA_H-akashiwo_Contig11.117.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=540bp|location=Sequence derived from alignment at H-akashiwo_Contig11:5232909..5233448- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig11:5232909..5233448- >mRNA_H-akashiwo_Contig11.117.1 ID=mRNA_H-akashiwo_Contig11.117.1|Name=mRNA_H-akashiwo_Contig11.117.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=540bp|location=Sequence derived from alignment at H-akashiwo_Contig11:5232909..5233448- (Heterosigma akashiwo CCMP452)back to top |