mRNA_H-akashiwo_Contig11.117.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.117.1
Unique NamemRNA_H-akashiwo_Contig11.117.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: B5YNE9_THAPS (AP complex subunit sigma n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE9_THAPS)

HSP 1 Score: 251 bits (641), Expect = 7.580e-83
Identity = 126/179 (70.39%), Postives = 150/179 (83.80%), Query Frame = 1
Query:    1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGSNY 537
            MIKG+IIVNN GK RL KF+  V    E+++ SV+RRV+QQV+ RPD+FCNYLEGS+PE+GE  KLIYRHYATLYF+FAVD+QESDLGILDLIQVFVEALDK FENVCELDLIFHSD+VHY+LDEIVMGGMV+ETNINSI+ A+NDQ R+H+ SM+ V  + SDS   +S   G G N+
Sbjct:    1 MIKGIIIVNNSGKPRLVKFYQNV--FGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMKKV--QQSDSVDAISTKLGAGRNW 175          
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A835ZDS3_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS3_9STRA)

HSP 1 Score: 249 bits (637), Expect = 3.530e-82
Identity = 122/157 (77.71%), Postives = 142/157 (90.45%), Query Frame = 1
Query:    1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRI 471
            MIK V+IVNNHGK RL KF+ TV    E+ + SV+RR++QQVA RPD FCNYLEGSIPE+GEGTKLIYRHYATLYFIFAVD+QESDLGILDLIQVFVEALDK FENVCELDLIFHSD+VHYVLDE++MGGMV+ETNIN+++ AVNDQS+LH+ SM++
Sbjct:    1 MIKAVVIVNNHGKPRLVKFYKTVTD--EDAQQSVIRRIFQQVAQRPDNFCNYLEGSIPEWGEGTKLIYRHYATLYFIFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEMIMGGMVLETNINAVLSAVNDQSKLHAASMKV 155          
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: D7FQE5_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE5_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 6.550e-82
Identity = 121/157 (77.07%), Postives = 143/157 (91.08%), Query Frame = 1
Query:    1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRI 471
            MI+GVIIVNNHGK RL KF+ TV  + EE + SV++R++QQVA RPD+FCNYLEG IPE+GEGTKLIYRHYATLYF+FAVD+QESDLGILDL+QVFVEALDK FENVCELDLIFHSDKVHYVLDEI+MGGMV+ETNIN I++A+NDQ+RLH+ S ++
Sbjct:    1 MIRGVIIVNNHGKPRLVKFYQTV--VGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKV 155          
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA)

HSP 1 Score: 243 bits (621), Expect = 8.980e-80
Identity = 121/179 (67.60%), Postives = 145/179 (81.01%), Query Frame = 1
Query:    1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGSNY 537
            MIKG++IVNNHGK RL KF+ +V   SEE + SV+RRV+QQVA RPD+FCNYLEG IPE+G   KLIYRHYATLYF+FAVD+QESDLGILDLIQVFVEALDK FENVCELDLIFHSD+VHYVLDEIVMGGMV+ETNINS++ A+ DQ+++H  S+   +     S   +    G G+N+
Sbjct:    1 MIKGILIVNNHGKPRLVKFYQSVT--SEETQQSVIRRVFQQVAQRPDSFCNYLEGIIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSSLSQASKGKEGSADAIKTQLGSGTNW 177          
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A1Z5JTJ4_FISSO (AP complex subunit sigma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTJ4_FISSO)

HSP 1 Score: 239 bits (611), Expect = 3.300e-78
Identity = 121/174 (69.54%), Postives = 147/174 (84.48%), Query Frame = 1
Query:    1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPG 522
            MIKG+IIVNNHGK RL KF+ +VE  SE  + SV+RRV+QQVA RPD+FCNYLEG+IPE+G+  KLIYRHYATL+F+FAVD+QESDLGILDLIQVFVE+LD+ FE+VCELDLIFHSD+VHYVLDEIVMGGMV+ETNI+S++ AV DQ RLH  S+  V  EA++S   + +  G
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVE--SESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDSLTRV--EATESASHIQQRLG 170          
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A6U4LCC0_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4LCC0_9STRA)

HSP 1 Score: 239 bits (610), Expect = 4.390e-78
Identity = 122/177 (68.93%), Postives = 146/177 (82.49%), Query Frame = 1
Query:    1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGS 531
            MIKG++I+NNHGK RL KF+ +V   S EQ+ +V+RRVYQQV  RPD+FCNYLEGSIPE+GE TK+IYRHYATLYF+FAVD QESDLGILDLIQVFVEALDK FENVCELD+IF SD+V+YVLDEIVMGGMV+ETNIN+I+ A+ DQ  L+ +S+R  T  A  SR   S   G+G+
Sbjct:    1 MIKGILIINNHGKPRLTKFYQSV---SHEQQQAVIRRVYQQVVNRPDSFCNYLEGSIPEWGENTKIIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDIIFKSDRVNYVLDEIVMGGMVLETNINAILQAIRDQDHLNDNSLR--TGAAGQSRSVDSIREGLGA 172          
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: K0SBT8_THAOC (Clat_adaptor_s domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBT8_THAOC)

HSP 1 Score: 244 bits (624), Expect = 7.520e-78
Identity = 124/179 (69.27%), Postives = 148/179 (82.68%), Query Frame = 1
Query:    1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGSNY 537
            MIKG+IIVNN GK RL KF+  V    EE++ SV+RRV+QQV+ RPD+FCNYLEGS+PE+GE  KLIYRHYATLYF+FAVDAQESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVH++LDEIVMGGMV+ETNIN+I+ A++DQ R+H  SM+  T   ++S   +S   G G N+
Sbjct:  174 MIKGIIIVNNSGKPRLVKFYQNV--FGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMK--TKGPNESVDLISTKLGAGRNW 348          
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: W7T2Y9_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y9_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.530e-77
Identity = 121/176 (68.75%), Postives = 142/176 (80.68%), Query Frame = 1
Query:    1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIG 528
            MI+GVIIVNNHG+ RL K + +V  + EE + SV+R+V+QQVA RPD+FCNYL+GSIPE+GEG KLIYRHYATLYF+FAVD QESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVHYVLDEI+M GMV+ETNI  I+  +NDQ+RLH+ S +  T+          R P IG
Sbjct:    1 MIRGVIIVNNHGRPRLVKLYQSV--IGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKTSTSSTK------VRTPTIG 168          
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A7S2V317_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V317_9STRA)

HSP 1 Score: 234 bits (597), Expect = 8.990e-77
Identity = 112/129 (86.82%), Postives = 125/129 (96.90%), Query Frame = 1
Query:  145 FCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMRIVTTEASDSRKRVSRPPGIGS 531
            FCNYLEGSIPE+G+  KL+YRHYATLYF+FAVD+QESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMV+ETNINS+MVA+ DQ++LHS SMRIVTTEASD+RKRVSRPPG+G+
Sbjct:    1 FCNYLEGSIPEWGDSCKLVYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNINSVMVAITDQNKLHSQSMRIVTTEASDARKRVSRPPGVGN 129          
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA)

HSP 1 Score: 233 bits (595), Expect = 8.130e-76
Identity = 118/171 (69.01%), Postives = 141/171 (82.46%), Query Frame = 1
Query:    1 MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFCNYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEALDKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRLHSHSMR--IVTTEASDSRKRV 507
            MIKGVIIVNN GK RL KF+ +V   SEE +  V+RRV++Q++ RPD FCNYLEG +PE+G   KLIYRHYATLYF+FAVDAQESDLGILDLIQVFVEALDK FENVCELDLIFHSDKVHYVLDEIVMGGMV+ETNI SI+ A+ DQ +LH+ S++  +  T+    R+++
Sbjct:    1 MIKGVIIVNNQGKPRLAKFYQSVT--SEEIQQRVIRRVFEQISSRPDNFCNYLEGIVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKAKVDKTDGLSHREKI 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5YNE9_THAPS7.580e-8370.39AP complex subunit sigma n=1 Tax=Thalassiosira pse... [more]
A0A835ZDS3_9STRA3.530e-8277.71AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
D7FQE5_ECTSI6.550e-8277.07AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A6S8ZKR8_9STRA8.980e-8067.60AP complex subunit sigma n=1 Tax=Ditylum brightwel... [more]
A0A1Z5JTJ4_FISSO3.300e-7869.54AP complex subunit sigma n=2 Tax=Fistulifera solar... [more]
A0A6U4LCC0_9STRA4.390e-7868.93AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]
K0SBT8_THAOC7.520e-7869.27Clat_adaptor_s domain-containing protein n=2 Tax=T... [more]
W7T2Y9_9STRA2.530e-7768.75AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A7S2V317_9STRA8.990e-7786.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2P852_9STRA8.130e-7669.01AP complex subunit sigma n=1 Tax=Leptocylindrus da... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:5232909..5233448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps28984
PFAMsClat_adaptor_s
Model size540
Max annot lvl2836|Bacillariophyta
KEGG koko:K12399
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.24e-83
EggNOG OGsCOG5030@1|root,KOG0936@2759|Eukaryota,2XC2G@2836|Bacillariophyta
Ec32 ortholog descriptionClathrin assembly complex, small subunit
Ec32 orthologEc-01_006410.1
DescriptionBelongs to the adaptor complexes small subunit family
Cds size540
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387080.8067963-CDS-H-akashiwo_Contig11:5232908..52334481681387080.8067963-CDS-H-akashiwo_Contig11:5232908..5233448Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 5232909..5233448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.117.1prot_H-akashiwo_Contig11.117.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 5232909..5233448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.117.1

>prot_H-akashiwo_Contig11.117.1 ID=prot_H-akashiwo_Contig11.117.1|Name=mRNA_H-akashiwo_Contig11.117.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=180bp
MIKGVIIVNNHGKVRLRKFFSTVEQLSEEQKGSVVRRVYQQVACRPDTFC
NYLEGSIPEFGEGTKLIYRHYATLYFIFAVDAQESDLGILDLIQVFVEAL
DKSFENVCELDLIFHSDKVHYVLDEIVMGGMVIETNINSIMVAVNDQSRL
HSHSMRIVTTEASDSRKRVSRPPGIGSNY*
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mRNA from alignment at H-akashiwo_Contig11:5232909..5233448-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.117.1 ID=mRNA_H-akashiwo_Contig11.117.1|Name=mRNA_H-akashiwo_Contig11.117.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=540bp|location=Sequence derived from alignment at H-akashiwo_Contig11:5232909..5233448- (Heterosigma akashiwo CCMP452)
ATGATTAAAGGGGTGATTATTGTCAATAACCATGGAAAAGTTCGCCTTAG AAAGTTTTTCTCTACGGTAGAACAGCTCAGTGAAGAGCAAAAGGGTAGTG TGGTGAGAAGAGTTTACCAACAAGTTGCTTGCAGGCCAGATACTTTCTGC AACTACTTGGAAGGCAGTATCCCCGAATTTGGAGAAGGGACAAAGCTCAT TTACAGACATTACGCTACCTTATACTTTATTTTTGCGGTCGATGCCCAAG AGAGTGATCTAGGCATCCTGGATTTGATCCAGGTTTTTGTTGAAGCCCTC GACAAATCCTTCGAGAATGTTTGCGAGCTGGATCTGATTTTCCACAGCGA TAAAGTGCACTATGTGCTTGATGAGATTGTGATGGGTGGCATGGTAATTG AAACCAACATCAACTCTATCATGGTTGCAGTAAATGACCAGAGCCGTTTG CACTCTCACTCGATGAGGATTGTTACCACAGAGGCTTCAGATTCAAGGAA GCGGGTTTCAAGACCTCCAGGGATCGGTTCAAATTATTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:5232909..5233448-

>mRNA_H-akashiwo_Contig11.117.1 ID=mRNA_H-akashiwo_Contig11.117.1|Name=mRNA_H-akashiwo_Contig11.117.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=540bp|location=Sequence derived from alignment at H-akashiwo_Contig11:5232909..5233448- (Heterosigma akashiwo CCMP452)
ATGATTAAAGGGGTGATTATTGTCAATAACCATGGAAAAGTTCGCCTTAG
AAAGTTTTTCTCTACGGTAGAACAGCTCAGTGAAGAGCAAAAGGGTAGTG
TGGTGAGAAGAGTTTACCAACAAGTTGCTTGCAGGCCAGATACTTTCTGC
AACTACTTGGAAGGCAGTATCCCCGAATTTGGAGAAGGGACAAAGCTCAT
TTACAGACATTACGCTACCTTATACTTTATTTTTGCGGTCGATGCCCAAG
AGAGTGATCTAGGCATCCTGGATTTGATCCAGGTTTTTGTTGAAGCCCTC
GACAAATCCTTCGAGAATGTTTGCGAGCTGGATCTGATTTTCCACAGCGA
TAAAGTGCACTATGTGCTTGATGAGATTGTGATGGGTGGCATGGTAATTG
AAACCAACATCAACTCTATCATGGTTGCAGTAAATGACCAGAGCCGTTTG
CACTCTCACTCGATGAGGATTGTTACCACAGAGGCTTCAGATTCAAGGAA
GCGGGTTTCAAGACCTCCAGGGATCGGTTCAAATTATTGA
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