mRNA_H-akashiwo_Contig11.114.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.114.1
Unique NamemRNA_H-akashiwo_Contig11.114.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: A0A6S9LPB4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LPB4_HETAK)

HSP 1 Score: 169 bits (427), Expect = 2.530e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    1 STASVSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP 264
            STASVSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP
Sbjct:   83 STASVSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP 170          
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: UPI001C122D1D (aquaporin family protein n=2 Tax=Alkaliphilus TaxID=114627 RepID=UPI001C122D1D)

HSP 1 Score: 75.9 bits (185), Expect = 1.550e-14
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    4 TASVSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP 264
            T +VSG H+NPAV+ ALA        +GF W  V  YI AQ+AG FTGAA+ +A++      FE  N I+RGS++S  +A  F+ +P
Sbjct:   57 TGAVSGTHINPAVTIALAVF------RGFSWKKVIPYIGAQIAGTFTGAAVTFALYHKSFAAFEQANGIIRGSIDSVTTAGIFSTYP 137          
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: A0A538F2P2_9ACTN (Aquaporin family protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538F2P2_9ACTN)

HSP 1 Score: 75.5 bits (184), Expect = 2.910e-14
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   13 VSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP 264
            VSGAH+NPAV+ ALA       ++GF W+ VP YI AQ+AGAFTGAA+ Y  + + IK +E     VRG   S  S S FA FP
Sbjct:   88 VSGAHINPAVTVALAV------RRGFPWAKVPHYIFAQVAGAFTGAALVYLNYKDAIKGYEHATGAVRGQSSSIASYSIFATFP 165          
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: A0A538FT27_9ACTN (Aquaporin family protein n=5 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538FT27_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 4.210e-14
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   13 VSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP 264
            +SGAH+NPAV+ ALA       ++GF W+ VP YI AQ+AGAFTGAA+ Y  + + IK +E     VRG   S  S S FA FP
Sbjct:   88 ISGAHINPAVTIALAF------KRGFPWAKVPHYIFAQVAGAFTGAALVYLNYKDAIKSYEGATHAVRGQTSSIASYSIFATFP 165          
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: A0A7S3XV51_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV51_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 1.060e-13
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 STASVSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAF 252
            STASVSGAHLNPAVSFA+A +  +S    F W +   YI AQM G   G  +N+  F + I  +E +N I  GS ES  SA AF
Sbjct:   28 STASVSGAHLNPAVSFAIALTRGDS----FSWGECGAYILAQMVGGVIGGLVNFLTFYDLIHYYEEQNNIEPGSKESVMSAMAF 107          
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: A0A538GD00_9ACTN (Aquaporin family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538GD00_9ACTN)

HSP 1 Score: 73.9 bits (180), Expect = 1.130e-13
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   13 VSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP 264
            +SGAH+NPAV+ ALAA      ++GF WS VP YI AQ+AGAFT  A+ Y  + + IK +E     VRG   S  S S FA FP
Sbjct:   88 ISGAHINPAVTIALAA------KRGFPWSKVPHYIFAQVAGAFTAGALVYLNYKDAIKGYEHATDAVRGQASSIASYSIFATFP 165          
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: A0A538KXX8_9ACTN (Aquaporin family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538KXX8_9ACTN)

HSP 1 Score: 73.9 bits (180), Expect = 1.160e-13
Identity = 41/84 (48.81%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   13 VSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP 264
            +SGAH+NPAV+ ALA       ++GF W+ VP YI AQ+AGAFT AA+ Y  + + IK +E     VRG   S  S S FA FP
Sbjct:   88 ISGAHINPAVTIALAV------KRGFPWAKVPHYIFAQVAGAFTAAALVYLNYKDSIKSYEQATHAVRGQASSIASYSIFATFP 165          
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: A0A1Q9RBJ0_PSEPU (Glycerol uptake facilitator protein n=8 Tax=Pseudomonas TaxID=286 RepID=A0A1Q9RBJ0_PSEPU)

HSP 1 Score: 73.2 bits (178), Expect = 1.640e-13
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    4 TASVSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP 264
            TA +SGAHLNPAVS AL          GF+   +P YI AQ+AGAF GAA+ YA++SN    +E  +A+VRGS  S + AS F+ +P
Sbjct:   62 TAGISGAHLNPAVSIALCLF------AGFEKGKLPFYILAQVAGAFCGAALVYALYSNLFFDYEQTHAMVRGSQASLELASVFSTYP 142          
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: UPI001B8CA11D (aquaporin n=1 Tax=Photobacterium sp. GJ3 TaxID=2829502 RepID=UPI001B8CA11D)

HSP 1 Score: 72.4 bits (176), Expect = 3.170e-13
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    4 TASVSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP 264
            TA VSGAH+NPAV+ ALA  +      GF  S V  YI AQ+AGAF  AA+ Y+++SN    FE  + IVRGS+ES  +A  F+ +P
Sbjct:   61 TAGVSGAHINPAVTIALAIFH------GFDKSKVAPYILAQLAGAFCSAALIYSLYSNLFVDFENAHGIVRGSVESLGTAGIFSTYP 141          
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Match: A0A7S3XV60_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV60_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 3.290e-13
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 TASVSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGAAINYAVFSNFIKKFEVKNAIVRGSLESAKSASAF 252
            TASVSGAHLNPAVSFA+A + K    K F W +   Y+ AQM G   G  +NY  F + I  FE +N I RG  +S  SA AF
Sbjct:  171 TASVSGAHLNPAVSFAIALTRK----KIFSWGECGAYMLAQMLGGIIGGLVNYLTFYDLINYFEDQNGIDRGDKQSVLSAMAF 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S9LPB4_HETAK2.530e-50100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001C122D1D1.550e-1444.83aquaporin family protein n=2 Tax=Alkaliphilus TaxI... [more]
A0A538F2P2_9ACTN2.910e-1451.19Aquaporin family protein n=2 Tax=Actinomycetia bac... [more]
A0A538FT27_9ACTN4.210e-1450.00Aquaporin family protein n=5 Tax=Actinomycetia bac... [more]
A0A7S3XV51_HETAK1.060e-1350.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A538GD00_9ACTN1.130e-1350.00Aquaporin family protein n=1 Tax=Actinomycetia bac... [more]
A0A538KXX8_9ACTN1.160e-1348.81Aquaporin family protein n=1 Tax=Actinomycetia bac... [more]
A0A1Q9RBJ0_PSEPU1.640e-1349.43Glycerol uptake facilitator protein n=8 Tax=Pseudo... [more]
UPI001B8CA11D3.170e-1349.43aquaporin n=1 Tax=Photobacterium sp. GJ3 TaxID=282... [more]
A0A7S3XV60_HETAK3.290e-1350.60Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:4898897..4899622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1005395.CSV86_13989
Preferred nameglpF
PFAMsMIP
Model size267
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02440
KEGG TC1.A.8.1,1.A.8.2
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0009987,GO:0010035,GO:0010038,GO:0015144,GO:0015166,GO:0015168,GO:0015254,GO:0015267,GO:0015318,GO:0015791,GO:0015793,GO:0015850,GO:0016020,GO:0022803,GO:0022857,GO:0034219,GO:0042221,GO:0044464,GO:0046689,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071241,GO:0071248,GO:0071288,GO:0071702,GO:0071944,GO:1901618
Exons3
Evalue1.94e-14
EggNOG OGsCOG0580@1|root,COG0580@2|Bacteria,1MXTJ@1224|Proteobacteria,1RP2X@1236|Gammaproteobacteria,1YWQW@136845|Pseudomonas putida group
DescriptionBelongs to the MIP aquaporin (TC 1.A.8) family
Cds size267
COG categoryG
BiGG ReactioniAF1260.b3927,iAPECO1_1312.APECO1_2542,iB21_1397.B21_03761,iBWG_1329.BWG_3596,iEC042_1314.EC042_4301,iEC55989_1330.EC55989_4405,iECABU_c1320.ECABU_c44330,iECBD_1354.ECBD_4097,iECB_1328.ECB_03812,iECDH10B_1368.ECDH10B_4116,iECDH1ME8569_1439.ECDH1ME8569_3796,iECD_1391.ECD_03812,iECED1_1282.ECED1_4629,iECH74115_1262.ECH74115_5382,iECIAI1_1343.ECIAI1_4132,iECNA114_1301.ECNA114_4066,iECO103_1326.ECO103_4601,iECO111_1330.ECO111_4750,iECO26_1355.ECO26_4658,iECOK1_1307.ECOK1_4395,iECP_1309.ECP_4136,iECS88_1305.ECS88_4377,iECSE_1348.ECSE_4216,iECSF_1327.ECSF_3787,iECSP_1301.ECSP_4990,iECUMN_1333.ECUMN_4455,iECW_1372.ECW_m4279,iECs_1301.ECs4852,iEKO11_1354.EKO11_4388,iETEC_1333.ETEC_4196,iEcDH1_1363.EcDH1_4058,iEcE24377_1341.EcE24377A_4461,iEcSMS35_1347.EcSMS35_4367,iEcolC_1368.EcolC_4091,iG2583_1286.G2583_4732,iJN746.PP_1076,iJO1366.b3927,iJR904.b3927,iLF82_1304.LF82_0868,iNRG857_1313.NRG857_19605,iSSON_1240.SSON_4096,iUMNK88_1353.UMNK88_4764,iUTI89_1310.UTI89_C4511,iWFL_1372.ECW_m4279,iY75_1357.Y75_RS17425,iZ_1308.Z5472,ic_1306.c4879
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387080.7613287-CDS-H-akashiwo_Contig11:4898896..48990181681387080.7613287-CDS-H-akashiwo_Contig11:4898896..4899018Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4898897..4899018 -
1681387080.7729306-CDS-H-akashiwo_Contig11:4899348..48994181681387080.7729306-CDS-H-akashiwo_Contig11:4899348..4899418Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4899349..4899418 -
1681387080.7810264-CDS-H-akashiwo_Contig11:4899547..48996221681387080.7810264-CDS-H-akashiwo_Contig11:4899547..4899622Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4899548..4899622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.114.1prot_H-akashiwo_Contig11.114.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 4898897..4899622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.114.1

>prot_H-akashiwo_Contig11.114.1 ID=prot_H-akashiwo_Contig11.114.1|Name=mRNA_H-akashiwo_Contig11.114.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
STASVSGAHLNPAVSFALAASNKESGQKGFKWSDVPGYISAQMAGAFTGA
AINYAVFSNFIKKFEVKNAIVRGSLESAKSASAFACFP*
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mRNA from alignment at H-akashiwo_Contig11:4898897..4899622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.114.1 ID=mRNA_H-akashiwo_Contig11.114.1|Name=mRNA_H-akashiwo_Contig11.114.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=726bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4898897..4899622- (Heterosigma akashiwo CCMP452)
AGCACGGCATCTGTATCTGGAGCTCATCTGAATCCAGCTGTGAGCTTTGC ACTTGCAGCCTCTAACAAAGAATCGGTGAGTTGCGAAAATTCTTTTCATG AAAACACCGGCCTTGTGTTTGGTAGATATCTTTGTGTGACACTCTGCTGC AAATGGTATACGATTGCAAGTTAAATATCAACATAATATTTTCTTCTGGG GTAGGGACAAAAGGGATTCAAATGGTCTGATGTTCCAGGTTACATCAGCG CCCAAATGGCTGGGGCGTTTACTGGTATGTATATACCTTTTTAATACAAA CACTATACTACTCACTCAGTGCCATACCAACAAAAACGTGATCGATATAT ATATAATGAAAATCGTGAACAACTGCAATATACACCAGGCACCAGGAAAA TGCAAACAGAGACCAGAGACCATTCTCCTTTCATGTGTCTGTGCATGTTG TTGTAGTTCACAAAAGTATAAGAGAATATGTATATTGTAAAAACAATGAA ATCAAGAGTTTACTACATGAGTGGCTGCTGCCGATTATACATACAGAAAG AAAATCAATTAGCTTCAGCCTGGTCCATGTTTCTCTTTCCATGCCGCCTT CAAGGAGCTGCTATCAACTATGCTGTCTTCTCCAACTTTATCAAGAAGTT TGAGGTTAAAAATGCTATTGTCAGGGGAAGCCTTGAGAGCGCCAAGTCTG CTTCAGCTTTTGCTTGTTTCCCGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:4898897..4899622-

>mRNA_H-akashiwo_Contig11.114.1 ID=mRNA_H-akashiwo_Contig11.114.1|Name=mRNA_H-akashiwo_Contig11.114.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4898897..4899622- (Heterosigma akashiwo CCMP452)
AGCACGGCATCTGTATCTGGAGCTCATCTGAATCCAGCTGTGAGCTTTGC
ACTTGCAGCCTCTAACAAAGAATCGGGACAAAAGGGATTCAAATGGTCTG
ATGTTCCAGGTTACATCAGCGCCCAAATGGCTGGGGCGTTTACTGGAGCT
GCTATCAACTATGCTGTCTTCTCCAACTTTATCAAGAAGTTTGAGGTTAA
AAATGCTATTGTCAGGGGAAGCCTTGAGAGCGCCAAGTCTGCTTCAGCTT
TTGCTTGTTTCCCGTAA
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