mRNA_H-akashiwo_Contig11.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.11.1
Unique NamemRNA_H-akashiwo_Contig11.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:421138..421469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size222
Hectar predicted targeting categorysignal peptide
Exons2
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387075.7317955-UTR-H-akashiwo_Contig11:421137..4211661681387075.7317955-UTR-H-akashiwo_Contig11:421137..421166Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 421138..421166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387075.7412426-CDS-H-akashiwo_Contig11:421166..4212811681387075.7412426-CDS-H-akashiwo_Contig11:421166..421281Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 421167..421281 +
1681387075.7497907-CDS-H-akashiwo_Contig11:421392..4214691681387075.7497907-CDS-H-akashiwo_Contig11:421392..421469Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 421393..421469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.11.1prot_H-akashiwo_Contig11.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 421167..421469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.11.1

>prot_H-akashiwo_Contig11.11.1 ID=prot_H-akashiwo_Contig11.11.1|Name=mRNA_H-akashiwo_Contig11.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
MNVPVQLLLLLVLGSLFYCAGFITRSQSLMPSPLKLKAVVKQDGSEGGDS
TTELDGEQIECKTC
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mRNA from alignment at H-akashiwo_Contig11:421138..421469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.11.1 ID=mRNA_H-akashiwo_Contig11.11.1|Name=mRNA_H-akashiwo_Contig11.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=332bp|location=Sequence derived from alignment at H-akashiwo_Contig11:421138..421469+ (Heterosigma akashiwo CCMP452)
TTGCTTGGTGCGTTAACAAGGAAGGAACGATGAATGTGCCAGTTCAGCTA
TTGCTCTTACTGGTGCTTGGCTCCCTCTTTTATTGCGCTGGCTTCATCAC
ACGGAGTCAATCTTTGATGCCCAGCCCACTGAAACTCAAAGCAGGTGTGT
TTTGAGTACGGCATTTTTTCATGATACTGAGCACACAGTGCACGAAGGGG
CTAATATAGTATCGGACAAACGCATTCAAAAATTGTATGTTCAATTTCAA
CTCAGTGGTTAAGCAAGATGGTTCGGAGGGTGGTGATTCAACAACAGAGC
TGGATGGAGAACAAATAGAGTGCAAAACATGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:421138..421469+

>mRNA_H-akashiwo_Contig11.11.1 ID=mRNA_H-akashiwo_Contig11.11.1|Name=mRNA_H-akashiwo_Contig11.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig11:421138..421469+ (Heterosigma akashiwo CCMP452)
ATGAATGTGCCAGTTCAGCTATTGCTCTTACTGGTGCTTGGCTCCCTCTT
TTATTGCGCTGGCTTCATCACACGGAGTCAATCTTTGATGCCCAGCCCAC
TGAAACTCAAAGCAGTGGTTAAGCAAGATGGTTCGGAGGGTGGTGATTCA
ACAACAGAGCTGGATGGAGAACAAATAGAGTGCAAAACATGC
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