mRNA_H-akashiwo_Contig11.109.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.109.1
Unique NamemRNA_H-akashiwo_Contig11.109.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: B8C2A2_THAPS (Hemolysin ii-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2A2_THAPS)

HSP 1 Score: 88.6 bits (218), Expect = 1.060e-18
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = -1
Query:  251 YVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVL 490
            Y+T+GW+  FL+I +A  +G  GL++ +LGG+F+TVGG +YT+E P     G FGFHEIWH+ V+L A  H+A+M  CVL
Sbjct:  136 YITIGWIGAFLMIWIAPAIGLGGLAVFILGGLFFTVGGYVYTTEHPNPY-PGVFGFHEIWHVAVILGAACHFAVMYCCVL 214          
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: A0A6U1CTS6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1CTS6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.690e-18
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = -1
Query:  209 YVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVLPES*K*YFSEAGFG 490
            YVT+GW+  FL I + + + + GLSLL LGG+FYTVGGV+++ E P   + G FGFHEIWHI V+L A  H+ +M L VLP     ++S A  G
Sbjct:  188 YVTLGWLGAFLSIPLYAKVHSGGLSLLALGGVFYTVGGVVFSVETPNP-VPGKFGFHEIWHIFVILGAALHWCLMFLYVLPW----HYSPASGG 276          
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: A0A7S2IBF5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IBF5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-18
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = -1
Query:  203 YVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVLPES*K*YFSEAGFGQN 490
            Y+T+GW+  F+   +   +G  G+ + VLGG+ YTVGG IY++EKP   I G FGFHEIWHI V+LAA TH+ +M   VLP     +  +  +G N
Sbjct:  210 YITIGWIGAFMAKWLMPVIGAEGMGVFVLGGVLYTVGGAIYSAEKPNP-IPGKFGFHEIWHIFVILAAATHWCLMYFFVLPW----HHPDENYGDN 300          
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: A0A7S1WPC6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WPC6_ALECA)

HSP 1 Score: 88.2 bits (217), Expect = 8.430e-18
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = -1
Query:  236 YVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVLPES*K 490
            YVT+GW   FL +     LG +GLSL+ LGG+ YT GGV++T +KP     G FGFHEIWHI VML A  H+AM+   V P   K
Sbjct:  234 YVTLGWFGAFLAVPAYDCLGPMGLSLMALGGVVYTGGGVVFTMQKPNPF-PGRFGFHEIWHISVMLGAALHWAMVFFYVWPAMCK 317          
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: A0A6U3QPW7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3QPW7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.640e-17
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  251 YVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVL 490
            Y+T+GW+  F+   +   +G  G+ +  LGG+ YTVGG IY++EKP   I GHFGFHEIWHI V+LAA TH+ +M   VL
Sbjct:  210 YITIGWIGAFMAHWLLPVIGYEGMGIFALGGVLYTVGGAIYSAEKPNP-IPGHFGFHEIWHIFVILAAATHWCLMYFFVL 288          
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: A0A1V6BTJ1_9SPIR (Hemolysin-III related n=1 Tax=Spirochaetes bacterium ADurb.Bin133 TaxID=1852909 RepID=A0A1V6BTJ1_9SPIR)

HSP 1 Score: 84.3 bits (207), Expect = 5.530e-17
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -1
Query:  248 IYVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVLP 493
            IYV+MGW+   L + +   LG   ++LLVLGG+FYTVG +I+ SE+P   + G FGFHE+WHI V+L A +H+ +M + +LP
Sbjct:  145 IYVSMGWIGGVLAVPLYKALGFFPIALLVLGGVFYTVGSIIFYSERPN-FVKGKFGFHELWHIFVILGALSHFMIMYIYILP 225          
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: A0A7S2KAD1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KAD1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.170e-16
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  248 YVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVLP 490
            Y+T+GW+  FL + +  Y+G  GL + VLGG+ YTVGG +Y+SE+P     G FGFHEIWH  V+LAA  H+A+M   V+P
Sbjct:  213 YITIGWLGGFLALYIIPYIGLSGLFVFVLGGVCYTVGGYVYSSEQPNPY-PGKFGFHEIWHCFVILAAFFHFAVMFWWVVP 292          
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: A0A261QKZ3_9BACI (Hemolysin n=3 Tax=Bacillaceae TaxID=186817 RepID=A0A261QKZ3_9BACI)

HSP 1 Score: 82.0 bits (201), Expect = 3.400e-16
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  251 IYVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVL 493
            +Y+ MGWM +F +  +++ L T GL LLVLGG+FYT+GG+IY + KP  L   H GFHEI+HI +ML +  H+  + L VL
Sbjct:  136 LYIVMGWMIIFAISPLSTNLSTSGLLLLVLGGVFYTIGGIIY-AFKPKCLSFKHMGFHEIFHIFIMLGSTAHFLSVFLYVL 215          
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: A0A846TD00_9BACI (Hemolysin III family protein n=3 Tax=Mesobacillus TaxID=2675231 RepID=A0A846TD00_9BACI)

HSP 1 Score: 80.9 bits (198), Expect = 9.360e-16
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  251 IYVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVL 493
            IY+ MGWM +F+V  ++S L T G+SLLV+GGI YT+GGVIY + KP  L   H GFHEI+HI +ML +  H+  + + VL
Sbjct:  136 IYIIMGWMVIFVVSPLSSVLSTGGISLLVIGGIMYTIGGVIY-ALKPDFLRSKHLGFHEIFHIFIMLGSTAHFLSVYVYVL 215          
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Match: UPI00082EE879 (hemolysin III family protein n=1 Tax=Bacillus sp. FJAT-29814 TaxID=1729688 RepID=UPI00082EE879)

HSP 1 Score: 79.7 bits (195), Expect = 2.570e-15
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  251 IYVTMGWMSLFLVISVASYLGTLGLSLLVLGGIFYTVGGVIYTSEKPAALIHGHFGFHEIWHILVMLAAGTHYAMMVLCVL 493
            +Y+ MGWM +F+   +A  L  +GL LLVLGGIFYTVGGVIY   KP  L   H+GFHEI+HI +ML +  H+  + L V+
Sbjct:  136 LYIAMGWMVVFVFSPLAGSLNPVGLFLLVLGGIFYTVGGVIY-GAKPKFLKFKHWGFHEIFHIFIMLGSLAHFLCVFLYVI 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8C2A2_THAPS1.060e-1851.25Hemolysin ii-like protein (Fragment) n=1 Tax=Thala... [more]
A0A6U1CTS6_9STRA1.690e-1850.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2IBF5_9STRA2.500e-1845.83Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1WPC6_ALECA8.430e-1851.76Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6U3QPW7_9STRA1.640e-1751.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1V6BTJ1_9SPIR5.530e-1748.78Hemolysin-III related n=1 Tax=Spirochaetes bacteri... [more]
A0A7S2KAD1_9STRA1.170e-1650.62Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A261QKZ3_9BACI3.400e-1649.38Hemolysin n=3 Tax=Bacillaceae TaxID=186817 RepID=A... [more]
A0A846TD00_9BACI9.360e-1651.85Hemolysin III family protein n=3 Tax=Mesobacillus ... [more]
UPI00082EE8792.570e-1551.85hemolysin III family protein n=1 Tax=Bacillus sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:4657444..4657936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size493
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.1982532-UTR-H-akashiwo_Contig11:4657443..46575821681387077.1982532-UTR-H-akashiwo_Contig11:4657443..4657582Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 4657444..4657582 +
1681387077.2171073-UTR-H-akashiwo_Contig11:4657885..46579361681387077.2171073-UTR-H-akashiwo_Contig11:4657885..4657936Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 4657886..4657936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.207237-CDS-H-akashiwo_Contig11:4657582..46578851681387077.207237-CDS-H-akashiwo_Contig11:4657582..4657885Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4657583..4657885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.109.1prot_H-akashiwo_Contig11.109.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 4657583..4657885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.109.1

>prot_H-akashiwo_Contig11.109.1 ID=prot_H-akashiwo_Contig11.109.1|Name=mRNA_H-akashiwo_Contig11.109.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
MRMMENDLAVKNFAKERERGKILPKSSFTKISFSRLWKNTEHHHCIVGSC
SQHHQDMPDFMKAEVTMNQCRWFFRSVDHPPNSVEYSSKNQKRQTKSAQV
*
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mRNA from alignment at H-akashiwo_Contig11:4657444..4657936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.109.1 ID=mRNA_H-akashiwo_Contig11.109.1|Name=mRNA_H-akashiwo_Contig11.109.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=493bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4657444..4657936+ (Heterosigma akashiwo CCMP452)
TAACACAAACTGCTTGTTGCTACTAGTAGATAAAGAAAAAAAGGCAGCAC CTTCGCCTCTCACATTACCAAGGGCTCATTGGCATTGGCACTGGCCAGCT GCAAAAGATGCATTCAAATAGATTTGATCTGGTGCTAGAATGAGAATGAT GGAAAATGACTTGGCAGTTAAGAATTTCGCAAAAGAGAGAGAGAGAGGAA AAATTCTGCCCAAATCCAGCTTCACTAAAATATCATTTTCACGACTCTGG AAGAACACAGAGCACCATCATTGCATAGTGGGTTCCTGCAGCCAGCATCA CCAAGATATGCCAGATTTCATGAAAGCCGAAGTGACCATGAATCAATGCC GCTGGTTTTTCAGAAGTGTAGATCACCCCCCCAACAGTGTAGAATATTCC TCCAAGAACCAGAAGAGACAGACCAAGAGTGCCCAAGTATGAGGCCACTG AAATGACCAGAAACAAACTCATCCAACCCATTGTGACGTAGAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:4657444..4657936+

>mRNA_H-akashiwo_Contig11.109.1 ID=mRNA_H-akashiwo_Contig11.109.1|Name=mRNA_H-akashiwo_Contig11.109.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4657444..4657936+ (Heterosigma akashiwo CCMP452)
ATGAGAATGATGGAAAATGACTTGGCAGTTAAGAATTTCGCAAAAGAGAG
AGAGAGAGGAAAAATTCTGCCCAAATCCAGCTTCACTAAAATATCATTTT
CACGACTCTGGAAGAACACAGAGCACCATCATTGCATAGTGGGTTCCTGC
AGCCAGCATCACCAAGATATGCCAGATTTCATGAAAGCCGAAGTGACCAT
GAATCAATGCCGCTGGTTTTTCAGAAGTGTAGATCACCCCCCCAACAGTG
TAGAATATTCCTCCAAGAACCAGAAGAGACAGACCAAGAGTGCCCAAGTA
TGA
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