mRNA_H-akashiwo_Contig11.106.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.106.1
Unique NamemRNA_H-akashiwo_Contig11.106.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:4604577..4604904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size214
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.7453554-CDS-H-akashiwo_Contig11:4604576..46046131681387076.7453554-CDS-H-akashiwo_Contig11:4604576..4604613Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4604577..4604613 -
1681387076.7539806-CDS-H-akashiwo_Contig11:4604728..46049041681387076.7539806-CDS-H-akashiwo_Contig11:4604728..4604904Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4604729..4604904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.106.1prot_H-akashiwo_Contig11.106.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 4604577..4604904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.106.1

>prot_H-akashiwo_Contig11.106.1 ID=prot_H-akashiwo_Contig11.106.1|Name=mRNA_H-akashiwo_Contig11.106.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=71bp
MEPSAQPGRKEPERDLNLEANSSQCQNHPQSSHARREKQPIKNLKDILPS
SYRGSCYIRRTSTKSGEWAWN
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mRNA from alignment at H-akashiwo_Contig11:4604577..4604904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.106.1 ID=mRNA_H-akashiwo_Contig11.106.1|Name=mRNA_H-akashiwo_Contig11.106.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=328bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4604577..4604904- (Heterosigma akashiwo CCMP452)
ATGGAACCTTCTGCCCAACCTGGTAGGAAGGAGCCTGAACGTGACCTGAA
TCTGGAAGCCAACTCGAGTCAGTGCCAAAACCACCCACAGTCTTCTCATG
CTCGGCGAGAAAAGCAGCCGATCAAGAACCTGAAGGATATCCTTCCTTCG
TCTTACAGAGGAAGCTGCTATATAAGGTTTGAAAATGGCTGATGATAACA
TTGAATACCTTTTCTGGTGTTAAATCTTCCGTATTTCTTATAAAAAAAAA
CATTGTTTGCCTCCTTTCCACCGCTGGCGCCTTCTTTTCAGACGAACCTC
CACCAAAAGTGGCGAATGGGCGTGGAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:4604577..4604904-

>mRNA_H-akashiwo_Contig11.106.1 ID=mRNA_H-akashiwo_Contig11.106.1|Name=mRNA_H-akashiwo_Contig11.106.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=213bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4604577..4604904- (Heterosigma akashiwo CCMP452)
ATGGAACCTTCTGCCCAACCTGGTAGGAAGGAGCCTGAACGTGACCTGAA
TCTGGAAGCCAACTCGAGTCAGTGCCAAAACCACCCACAGTCTTCTCATG
CTCGGCGAGAAAAGCAGCCGATCAAGAACCTGAAGGATATCCTTCCTTCG
TCTTACAGAGGAAGCTGCTATATAAGACGAACCTCCACCAAAAGTGGCGA
ATGGGCGTGGAAT
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