mRNA_H-akashiwo_Contig11.104.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.104.1
Unique NamemRNA_H-akashiwo_Contig11.104.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:4575175..4576806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size247
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.6296213-UTR-H-akashiwo_Contig11:4575174..45752191681387076.6296213-UTR-H-akashiwo_Contig11:4575174..4575219Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 4575175..4575219 -
1681387076.657025-UTR-H-akashiwo_Contig11:4576778..45768061681387076.657025-UTR-H-akashiwo_Contig11:4576778..4576806Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 4576779..4576806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.641692-CDS-H-akashiwo_Contig11:4575219..45753491681387076.641692-CDS-H-akashiwo_Contig11:4575219..4575349Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4575220..4575349 -
1681387076.6489363-CDS-H-akashiwo_Contig11:4576734..45767781681387076.6489363-CDS-H-akashiwo_Contig11:4576734..4576778Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4576735..4576778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.104.1prot_H-akashiwo_Contig11.104.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 4575220..4576778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.104.1

>prot_H-akashiwo_Contig11.104.1 ID=prot_H-akashiwo_Contig11.104.1|Name=mRNA_H-akashiwo_Contig11.104.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
MSASNLIKAAKQEKRDHLERTLRQEEDEEEITSKLMNKTSLGGGGSVLPD
INMKKKL*
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mRNA from alignment at H-akashiwo_Contig11:4575175..4576806-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.104.1 ID=mRNA_H-akashiwo_Contig11.104.1|Name=mRNA_H-akashiwo_Contig11.104.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1632bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4575175..4576806- (Heterosigma akashiwo CCMP452)
GGATCCTGGTGCCAATGAAATAAATGGAATGTCTGCTTCCAATCTAATCA
AAGCTGCAAAGCAAGAAAAGAGGTACTTGGTTTCTACATATGATCACAGA
TGTTATACATAAATAGAATGCATGCCTGTAGTAGAAAACAGCTTGAAAAT
AAGGTATAACTATAATAAAGATGGGTGGTACTACACTGCTGCATTGGGTG
AGAGTTGCTAGTATCACCCTATTTATTATTGTAGTCGCAATGTAATTATA
ATTCATGCGGACGAATTCATCACAGCCTGTCCCCCGGTAAAAACAGGAAT
ATGGAGATGGAAAGACGAACTCATGCAAAACATATGAGGACAAAAAAAAA
TGCCAACGAATCAAAAACCACAGAGCAACAGAAATTGCCAATCAGAAAAT
AGCATCTGTCATACATATAGTAGAGTGCAGAAAACCATTTGTCATGTAGA
AAATCAAGAAAGAGAATTTGACATGTACAATATGTTCGTTTTTCAAGTAG
CGGCCCGATAACTCTGTTGTAAGGGTGTTCTGATGATCGACACTGTCCAA
CTAAAAGATGCGCAAGGCCCCGAACCTGAGCGGCTTGCGCCTGCCGAGCT
ATGTGTGTGTGTTTTGGATGATCCCGTTTGCTATAGTCATTGGTGAATGA
GAACAGTGGTGAGTGACAAGTAATTGTTATTGTTGTGTTGTTGAGCCAAT
CAGTATGGTTCATACTTGGCTGACAACATCAGTGGAGTTCTTCTGACCAG
TGAGAACGTTCTCGGAAATTTCTTCTTGGTGTTGAATCCTCGTCACTTTT
TTTGTACTACTTGGAAAATATCTCCCCAGCAGCAGCGTGTCCATGGTGGT
GGTGCATGGTGGTGGTGGCTGATGCTGGAGAATCTCAGGGAGGCTAGGAA
ATTTGTGTTGCTGCGAGGACCCAGGAATTGGAGCGTGAGAGTAAGCATCG
GGAATATTAGGAAGCAGTGTAAGTCGTGGTTGGGAAGCAGGGGAAAAAAG
CTGGTTATGGTTGGGGACGGATGGAGTGGTAAAGAGACTGGCATTTTCTT
AAAGTTTTGGTGATGACCAGCAGGAGACAAGAAACGGAACCTATAGCAGT
GGAAGGGTCCGCTTATGGAGGCCGGGATTTCGGTCCTTGTAGTTATCCAA
GAGGCTGGACCTTAAATATAATACTAACTAATAATAAAATCATCATCATC
ATCATCATGTACTTATATTATAGTATACATACGACATGATGCTGCAAGAA
GAAGTTATTACTTTTCTAAACGAAACACATGGTTTTAACCAACAAAACTT
GTCAAATAATTATATGATGATGACAAGCACCACCCCTTCTTCGTCTTGCT
TTTACAACAGCACAAAAAAGAAGTAATATTTACTTGACCATTGTTGTTGT
TGTTATTATTATTATCACATCTATCATTATTATTCTTCAACAATGTATTT
TCCAAAGAGACCATCTTGAGAGAACCCTGAGACAAGAAGAAGATGAAGAA
GAGATTACAAGCAAGCTAATGAATAAGACCTCATTGGGTGGTGGGGGCAG
TGTACTTCCAGATATAAACATGAAAAAAAAGTTATGACAAAAATCGATGA
AGAAGATTTAAGCTTAAGAAGCAGAATAACTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:4575175..4576806-

>mRNA_H-akashiwo_Contig11.104.1 ID=mRNA_H-akashiwo_Contig11.104.1|Name=mRNA_H-akashiwo_Contig11.104.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4575175..4576806- (Heterosigma akashiwo CCMP452)
ATGTCTGCTTCCAATCTAATCAAAGCTGCAAAGCAAGAAAAGAGAGACCA
TCTTGAGAGAACCCTGAGACAAGAAGAAGATGAAGAAGAGATTACAAGCA
AGCTAATGAATAAGACCTCATTGGGTGGTGGGGGCAGTGTACTTCCAGAT
ATAAACATGAAAAAAAAGTTATGA
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