mRNA_H-akashiwo_Contig1099.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1099.1.1
Unique NamemRNA_H-akashiwo_Contig1099.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 309 bits (792), Expect = 1.970e-103
Identity = 146/168 (86.90%), Postives = 162/168 (96.43%), Query Frame = 1
Query:    1 VRRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 504
            V+RAFRYLKGTQSESLRLGGDLVLRAFSDSDFC+DR++GKSVTGY+LFLGDAPIVWSSKLQGAVTTSTVEAEYLALRS+VKDIMWLR LL ++GCPQ EPTPVVEDNSAC+EWAN ++++++NRHFHVSYHLAKEQVSLGTIRMF+IKTHDQVADI TKALNA NFER
Sbjct:  175 VQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFER 342          
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 166 bits (420), Expect = 1.740e-44
Identity = 78/160 (48.75%), Postives = 110/160 (68.75%), Query Frame = 1
Query:   16 RYLKGTQSESLRLGGDLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAEN 495
            RYL  T+ + + LGG L L A++D+DFCS+R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR++V D+MWL+ LL  LG  +Q   P+ EDN ACI WAN   +S+  RH HVSYH  KE V    I + ++ T  Q+AD+FTK L+  N
Sbjct:  827 RYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNN 985          
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: UPI00098DD449 (uncharacterized protein LOC109818890 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DD449)

HSP 1 Score: 141 bits (355), Expect = 2.350e-37
Identity = 74/168 (44.05%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 VRRAFRYLKGTQSESLRLGG--DLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 498
             +R  RY+KGT S  L      D  L  +SDSD+  D  + KS +G+V ++GD    W SK Q  VT ST EAEY+A  S V   +WLR+LL +L  PQ EPT +  DN + I  A   V   +++H H  YH  +E +S   ++M ++KTHDQVADIFTK L  E F
Sbjct:  206 AKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVF 373          
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: A0A507C9N9_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507C9N9_9FUNG)

HSP 1 Score: 133 bits (335), Expect = 6.050e-36
Identity = 67/169 (39.64%), Postives = 105/169 (62.13%), Query Frame = 1
Query:    1 VRRAFRYLKGTQSESLRLGG-DLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 504
            V+R  RYL+GT+S  L +GG D  L+A+SD+D+  DR++ KS +G  +F G   IVW+   Q  V TSTVEAEY+AL ++ KD++W + LL +LG  + EPT ++EDN+ C + A     + + +H  + YH  ++ V    + +    T + +ADI TK L+ + FE+
Sbjct:   32 VKRILRYLQGTKSLKLVIGGKDPSLKAYSDADWAGDRVDRKSRSGSAVFYGTGLIVWNCGKQECVATSTVEAEYIALANTAKDVLWSQQLLGELGRGRNEPTTILEDNNGCKQLAVHPTTTSRTKHIDIKYHFIRDLVVKKMVSVERCPTTEMIADILTKPLSPQKFEQ 200          
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: A0A540MBX8_MALBA (Uncharacterized protein n=2 Tax=Malus baccata TaxID=106549 RepID=A0A540MBX8_MALBA)

HSP 1 Score: 134 bits (336), Expect = 7.600e-36
Identity = 70/170 (41.18%), Postives = 99/170 (58.24%), Query Frame = 1
Query:    1 VRRAFRYLKGTQSESLRLGG--DLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 504
             +R  RYLKGT +  L      +  L  +SDSD+  D  + KS TG+V F+GD    W SK Q  VT ST EAEY+A  S V + +WLR+LL +L  PQ+ PT +  DN + I  A   V   +++H    YH  +E ++   +++ ++K+ DQVADIFTK L  E+F R
Sbjct:   70 AKRILRYLKGTVNFGLLYSSSSNYKLAGYSDSDWAGDSDDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCNAIWLRNLLKELSTPQEGPTEIYVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECIARKDVQVEYVKSQDQVADIFTKPLKQEDFIR 239          
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA)

HSP 1 Score: 141 bits (355), Expect = 1.020e-35
Identity = 74/168 (44.05%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 VRRAFRYLKGTQSESLRLGG--DLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 498
             +R  RY+KGT S  L      D  L  +SDSD+  D  + KS +G+V ++GD    W SK Q  VT ST EAEY+A  S V   +WLR+LL +L  PQ EPT +  DN + I  A   V   +++H H  YH  +E +S   ++M ++KTHDQVADIFTK L  E F
Sbjct: 1162 AKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVF 1329          
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 130 bits (327), Expect = 4.280e-35
Identity = 67/170 (39.41%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    1 VRRAFRYLKGTQSESL--RLGGDLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 504
            V+R F+YL+GT    L      D  L  +SD+D+  D  N +S TGY+  +G   + W SK Q  V  ST EAEY+AL S+ ++ +W+R L AD+      PT + EDN + I  A       + +H  + YH  +EQVS  ++++ + +T D VADIFTK L  E FER
Sbjct:    3 VKRIFQYLRGTSHLGLLYNKSEDTSLVGYSDADWGGDVDNYRSTTGYIFQIGGVAVSWKSKRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFER 172          
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: A0A2N9GFE2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GFE2_FAGSY)

HSP 1 Score: 130 bits (326), Expect = 6.060e-35
Identity = 67/169 (39.64%), Postives = 99/169 (58.58%), Query Frame = 1
Query:    1 VRRAFRYLKGTQSESLRL-GGDLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 504
             +R  RYL+GT S  +R   G  +L AF+DSD+  D  + +S TG  +FLG+ PI W SK Q  V+ S+ EAEY AL S   ++ WL  +L DLG        +  DN++ I  A+  +   +  H  V YH  +E+V  G + + FI T+DQ+AD+FTK L+ ++F+R
Sbjct:   12 AKRILRYLQGTLSLGIRFKSGSPILTAFTDSDWAGDPYDRRSTTGITVFLGNNPITWISKKQHTVSRSSTEAEYRALASGAAELTWLCQVLCDLGIFLPNAPTMWCDNTSTIALASSPIFHSRTNHIEVDYHFVRERVVRGDLHLQFISTNDQLADLFTKPLSTQHFQR 180          
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: UPI001C25DF96 (secreted RxLR effector protein 161-like n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C25DF96)

HSP 1 Score: 128 bits (322), Expect = 1.940e-34
Identity = 70/168 (41.67%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 VRRAFRYLKGTQSESLRLGG--DLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 498
             +R  RYLKGT    L      D  L  +S+SD+  D  + KS +GYV ++GD    W SK Q  VT ST EAEY+A+  SV   +WLR LL++LG PQ EPT +  DN + I  +   V   +++H    YH  +E V+   I++ ++K+ DQVADIFTK L  ++F
Sbjct:   12 AKRILRYLKGTIDYGLLYSATNDYRLVGYSNSDWAGDTDDQKSTSGYVFYMGDTTFTWMSKKQPIVTLSTCEAEYVAV--SVCHAIWLRSLLSELGWPQNEPTTIYVDNKSVIALSKNPVFHNRSKHIDTRYHYIRECVANQEIQVEYVKSQDQVADIFTKTLKYDDF 177          
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Match: A0A1J6IIF1_NICAT (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=6 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IIF1_NICAT)

HSP 1 Score: 133 bits (334), Expect = 3.670e-34
Identity = 73/170 (42.94%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    1 VRRAFRYLKGTQSESL--RLGGDLVLRAFSDSDFCSDRINGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 504
             RR  RYLKGT    L      DL L  F DSD+  D  + KS  G+V FLGD+ I WSSK Q  VT ST EAE++A  S     +WLR LL +L  PQ E T +  DN +    A   V   +++H    YH  +E ++   + + ++K+HDQVADIFTK L  E+F+R
Sbjct:  222 TRRILRYLKGTIDFGLFYSSSNDLNLMGFCDSDYAGDIDDRKSTIGFVFFLGDSIISWSSKKQPIVTLSTCEAEHIAAISCTCHAIWLRRLLKELNLPQIEATKICIDNKSAQALAKNPVYHDRSKHIDTRYHFIRESIAKKEVELKYVKSHDQVADIFTKPLKFEDFQR 391          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1099.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.970e-10386.90Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK1.740e-4448.75Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI00098DD4492.350e-3744.05uncharacterized protein LOC109818890 n=1 Tax=Cajan... [more]
A0A507C9N9_9FUNG6.050e-3639.64Uncharacterized protein n=2 Tax=Synchytrium endobi... [more]
A0A540MBX8_MALBA7.600e-3641.18Uncharacterized protein n=2 Tax=Malus baccata TaxI... [more]
A0A151RPT4_CAJCA1.020e-3544.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A1X7SFX4_AMPQE4.280e-3539.41Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A2N9GFE2_FAGSY6.060e-3539.64Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
UPI001C25DF961.940e-3441.67secreted RxLR effector protein 161-like n=1 Tax=Sa... [more]
A0A1J6IIF1_NICAT3.670e-3442.94Retrovirus-related pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1099contigH-akashiwo_Contig1099:197084..197587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4959.XP_002770616.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size504
Max annot lvl4751|Fungi
Hectar predicted targeting categorymitochondrion
Exons1
Evalue5.26e-33
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes,47E39@766764|Debaryomycetaceae
DescriptionTransposable element
Cds size504
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387075.697179-CDS-H-akashiwo_Contig1099:197083..1975871681387075.697179-CDS-H-akashiwo_Contig1099:197083..197587Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1099 197084..197587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1099.1.1prot_H-akashiwo_Contig1099.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1099 197084..197587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1099.1.1

>prot_H-akashiwo_Contig1099.1.1 ID=prot_H-akashiwo_Contig1099.1.1|Name=mRNA_H-akashiwo_Contig1099.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=168bp
VRRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCSDRINGKSVTGYVLFLG
DAPIVWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEP
TPVVEDNSACIEWANGLVISRKNRHFHVSYHLAKEQVSLGTIRMFFIKTH
DQVADIFTKALNAENFER
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mRNA from alignment at H-akashiwo_Contig1099:197084..197587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1099.1.1 ID=mRNA_H-akashiwo_Contig1099.1.1|Name=mRNA_H-akashiwo_Contig1099.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=504bp|location=Sequence derived from alignment at H-akashiwo_Contig1099:197084..197587+ (Heterosigma akashiwo CCMP452)
GTCCGGCGTGCATTTCGTTATCTTAAGGGTACTCAGTCTGAGTCATTACG TCTGGGTGGTGATCTGGTGCTACGTGCATTCTCTGATTCGGATTTCTGCT CTGATCGTATTAATGGCAAATCGGTTACAGGCTATGTTCTTTTTCTAGGT GACGCACCTATCGTTTGGTCCTCAAAGCTTCAAGGGGCGGTCACTACCTC CACAGTGGAAGCGGAGTATCTCGCTCTTCGGTCCTCAGTCAAAGACATCA TGTGGCTCCGCCATCTTCTTGCTGATCTTGGGTGCCCCCAGCAGGAGCCC ACTCCTGTTGTGGAGGACAATAGTGCCTGCATTGAGTGGGCGAATGGCTT AGTGATCTCCAGAAAGAATAGGCATTTCCATGTGTCCTATCATCTTGCTA AGGAGCAGGTGAGCCTTGGGACCATCAGAATGTTCTTCATTAAAACTCAT GACCAGGTGGCTGATATTTTTACCAAGGCTCTCAATGCAGAAAATTTTGA AAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1099:197084..197587+

>mRNA_H-akashiwo_Contig1099.1.1 ID=mRNA_H-akashiwo_Contig1099.1.1|Name=mRNA_H-akashiwo_Contig1099.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=504bp|location=Sequence derived from alignment at H-akashiwo_Contig1099:197084..197587+ (Heterosigma akashiwo CCMP452)
GTCCGGCGTGCATTTCGTTATCTTAAGGGTACTCAGTCTGAGTCATTACG
TCTGGGTGGTGATCTGGTGCTACGTGCATTCTCTGATTCGGATTTCTGCT
CTGATCGTATTAATGGCAAATCGGTTACAGGCTATGTTCTTTTTCTAGGT
GACGCACCTATCGTTTGGTCCTCAAAGCTTCAAGGGGCGGTCACTACCTC
CACAGTGGAAGCGGAGTATCTCGCTCTTCGGTCCTCAGTCAAAGACATCA
TGTGGCTCCGCCATCTTCTTGCTGATCTTGGGTGCCCCCAGCAGGAGCCC
ACTCCTGTTGTGGAGGACAATAGTGCCTGCATTGAGTGGGCGAATGGCTT
AGTGATCTCCAGAAAGAATAGGCATTTCCATGTGTCCTATCATCTTGCTA
AGGAGCAGGTGAGCCTTGGGACCATCAGAATGTTCTTCATTAAAACTCAT
GACCAGGTGGCTGATATTTTTACCAAGGCTCTCAATGCAGAAAATTTTGA
AAGG
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