mRNA_H-akashiwo_Contig1093.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1093.1.1
Unique NamemRNA_H-akashiwo_Contig1093.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: A0A6V1T6U9_HETAK (3-isopropylmalate dehydrogenase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T6U9_HETAK)

HSP 1 Score: 517 bits (1331), Expect = 7.370e-178
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 3 
Query:   39 MIYSILFILAILQIANAFVGTPLMGARGSARTFMAVEKKDSYDITLLTGDGIGPEITQATVAALAPLEKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEESKNYPEVELNHMYADNA 827
            MIYSILFILAILQIANAFVGTPLMGARGSARTFMAVEKKDSYDITLLTGDGIGPEITQATVAALAPLEKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEESKNYPEVELNHMY DNA
Sbjct:    1 MIYSILFILAILQIANAFVGTPLMGARGSARTFMAVEKKDSYDITLLTGDGIGPEITQATVAALAPLEKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEESKNYPEVELNHMYIDNA 263
[Close]
BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: A0A7S2V595_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V595_9STRA)

HSP 1 Score: 375 bits (964), Expect = 2.010e-122
Identity = 188/239 (78.66%), Postives = 207/239 (86.61%), Query Frame = 3 
Query:  114 ARGSARTFMAVEKKDSYDITLLTGDGIGPEITQATVAALAPLEKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTET-RDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEESKNYPEVELNHMYADNA 827
            A G ++  MAV KK SYD+TLL GDGIGPEIT A + A+ PLE++GF MNFK+ALIGG A+D VN PFPDESL+QC+ SDSVLL+CIGGYKWDKNPR LRPETGLL+MRKEM LFANLRPAKV+PQL+GASTLK EVLEGVDIMVVRELTGDVYFG PKGT T  DG+RV YNNMIY E EI RIAKVAFDVAMKRGK V+SIDKANVLDVSQLWRDVV EES+NYPEV+L HM  DNA
Sbjct:   17 AYGFSQITMAVGKKASYDVTLLKGDGIGPEITDAAIVAMKPLEQMGFTMNFKDALIGGIAIDEVNDPFPDESLKQCQESDSVLLACIGGYKWDKNPRHLRPETGLLKMRKEMDLFANLRPAKVLPQLLGASTLKPEVLEGVDIMVVRELTGDVYFGQPKGTMTDEDGQRVGYNNMIYSEGEITRIAKVAFDVAMKRGKKVHSIDKANVLDVSQLWRDVVTEESQNYPEVDLQHMLVDNA 255
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BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: B7G1X8_PHATC (3-isopropylmalate dehydrogenase n=2 Tax=Naviculales TaxID=38748 RepID=B7G1X8_PHATC)

HSP 1 Score: 351 bits (901), Expect = 8.650e-113
Identity = 182/262 (69.47%), Postives = 214/262 (81.68%), Query Frame = 3 
Query:   48 SILFILAILQIANAFVGTPLMGARGSARTFMAVEKKDSYDITLLTGDGIGPEITQATVAALAPL-EKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEE-SKNYPEVELNHMYADNA 827
            +++ +L +  +++AFV      AR  +    AV KKDSYDITLL GDGIGPEIT++T   L  L EK GF MN K ALIGGAA+DAVN PFP ESLEQC+ SDSVLL+CIGGYKWD NPRELRPE+GLL+MRKEMGLFANLRPAKV+PQL+ ASTLK EV+EGVD+MVVRELTGDVYFGTPKG ET +G+RV YNNMIY E EI RIA+VA DVA KRGK + S+DKANVLDVSQLWR+VV +  +K++P+VEL+HMY DNA
Sbjct:   10 ALIVVLGVASLSDAFVPQHSRFARHPS-VKDAVSKKDSYDITLLPGDGIGPEITESTKKVLTALCEKCGFDMNLKVALIGGAAIDAVNDPFPQESLEQCQASDSVLLACIGGYKWDSNPRELRPESGLLKMRKEMGLFANLRPAKVLPQLIDASTLKREVVEGVDVMVVRELTGDVYFGTPKGIETINGERVGYNNMIYSESEIDRIARVAGDVASKRGKKLCSVDKANVLDVSQLWREVVTDVITKDFPDVELSHMYVDNA 270
[Close]
BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: A0A7S2UN91_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UN91_9STRA)

HSP 1 Score: 346 bits (888), Expect = 6.560e-111
Identity = 180/252 (71.43%), Postives = 204/252 (80.95%), Query Frame = 3 
Query:   81 ANAFVGTPLMGAR-GSARTFMAVEKKDSYDITLLTGDGIGPEITQATVAALAPL-EKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEE-SKNYPEVELNHMYADNA 827
            A+ FV  P  G R GS+    AV KKDSY +TLL GDGIGPEIT+AT   L  L +K GF +  KEALIGGAA+DAV  PFP ESL+QC+ SDSVLL+CIGGYKWD NPRELRPE+GLL+MRKEMGLFANLRPAKV+PQL+ ASTLK EV+EGVD+MVVRELTGDVYFGTPKG +  DG+RV YNNMIY E EIRRIA+VA DVA KR   + S+DKANVLDVSQLWRDVVIE   K +P+VEL+HMY DNA
Sbjct:   18 ASGFV--PSAGRRFGSSSAVSAVSKKDSYSVTLLPGDGIGPEITEATKVVLTALCKKTGFTIELKEALIGGAAIDAVGDPFPQESLDQCRASDSVLLACIGGYKWDSNPRELRPESGLLKMRKEMGLFANLRPAKVLPQLIDASTLKREVVEGVDVMVVRELTGDVYFGTPKGIDVIDGERVGYNNMIYKESEIRRIARVAGDVASKRTGKLCSVDKANVLDVSQLWRDVVIEVCEKEFPDVELSHMYVDNA 267
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BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: A0A7S2P3R3_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3R3_9STRA)

HSP 1 Score: 341 bits (875), Expect = 2.960e-109
Identity = 175/243 (72.02%), Postives = 198/243 (81.48%), Query Frame = 3 
Query:  108 MGARGSARTFM-AVEKKDSYDITLLTGDGIGPEITQATVAALAPL-EKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEE-SKNYPEVELNHMYADNA 827
            M  RGSA + + A  KKDSYDITLL GDGIGPEIT AT   L  L E+  FK+N KEALIGGAA+DA N PFPDESL+QC   DSVLL+CIGGYKWD NPRELRPETGLL+MRKEMGLFANLRPA V+ QL+ ASTLK EV+EGVD+MVVRELTGDVYFGTPKG +  DG+RV YNNMIY E EI+RIA+VA DVA KRG  + S+DKANVLDVSQLWR+VV +   K +P+VEL+HMY DNA
Sbjct:    1 MSTRGSAISSLDATSKKDSYDITLLPGDGIGPEITTATTKVLQTLTERFNFKLNLKEALIGGAAIDAKNDPFPDESLQQCLSGDSVLLACIGGYKWDNNPRELRPETGLLKMRKEMGLFANLRPAVVLDQLIDASTLKREVVEGVDVMVVRELTGDVYFGTPKGIDVVDGERVGYNNMIYSESEIKRIARVAGDVASKRGGKLCSVDKANVLDVSQLWREVVTDICEKEFPDVELSHMYVDNA 243
[Close]
BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: A0A1E7F9J8_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9J8_9STRA)

HSP 1 Score: 340 bits (872), Expect = 1.930e-108
Identity = 178/252 (70.63%), Postives = 201/252 (79.76%), Query Frame = 3 
Query:   75 QIANAFVGTPLMGARGSARTFMAVEKKDSYDITLLTGDGIGPEITQATVAALAPL-EKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEE-SKNYPEVELNHMYADN 824
            +IA+A   T       SA    AV KKDSY ITLL GDGIGPEIT AT  AL  L EK GF +  KEALIGGAA+DAVN PFP+ESL+QC  SDSVLL+CIGGYKWD NPRELRPE+GLL+MRKEMGLFANLRPAKV+PQLM ASTLK E++EGVDIM VRELTGDVYFGTPKG +  DG+RV YNNMIY E EI RIA+VA D+A KRG  + SIDKANVLDVSQLWR+VV +  +K++P VEL+HMY DN
Sbjct:   25 KIADAVANTLSRSTTPSALN--AVSKKDSYSITLLPGDGIGPEITAATKVALTALCEKSGFTLELKEALIGGAAIDAVNDPFPEESLQQCLSSDSVLLACIGGYKWDNNPRELRPESGLLKMRKEMGLFANLRPAKVLPQLMDASTLKREIIEGVDIMCVRELTGDVYFGTPKGIDVIDGQRVGYNNMIYSEMEIDRIARVAGDIAAKRGGKLCSIDKANVLDVSQLWREVVTDVITKDFPSVELSHMYVDN 274
[Close]
BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: A0A7S0N7T0_9CRYP (3-isopropylmalate dehydrogenase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N7T0_9CRYP)

HSP 1 Score: 337 bits (865), Expect = 6.760e-108
Identity = 172/237 (72.57%), Postives = 192/237 (81.01%), Query Frame = 3 
Query:  120 GSARTFMAVEKKDSYDITLLTGDGIGPEITQATVAAL-APLEKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEESKNYPEVELNHMYADNA 827
            G   + MAV +KDSYD+TLL GDGIGPEI +A V A  A   K GF +NFKEALIGGAALDA N P PD +L+Q K SDSVLL+ IGG KWDKNPRELRPETGLLRMRK +GLFANLRPA V+PQL+ ASTLK EV+ GVDIMVVRELTGDVYFG PKG  T+DG+R  +NNM Y E E+RRIAKVAFD+A KRG  V S+DKANVLDVSQLWRDVVIEE   YP+VEL+HMY DNA
Sbjct:   14 GLTSSRMAVSRKDSYDVTLLPGDGIGPEIIKAAVVACKAVAAKQGFTINFKEALIGGAALDAHNDPLPDVTLKQMKASDSVLLAAIGGPKWDKNPRELRPETGLLRMRKALGLFANLRPATVLPQLIDASTLKPEVVAGVDIMVVRELTGDVYFGEPKGITTKDGERFGFNNMCYKESEVRRIAKVAFDIASKRGNKVCSVDKANVLDVSQLWRDVVIEEHAKYPKVELSHMYVDNA 250
[Close]
BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: A0A6S8RM19_9STRA (3-isopropylmalate dehydrogenase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8RM19_9STRA)

HSP 1 Score: 338 bits (868), Expect = 7.180e-108
Identity = 177/266 (66.54%), Postives = 205/266 (77.07%), Query Frame = 3 
Query:   39 MIYSILFILAILQIANAFVGTPLMGARGSARTF-MAVEKKDSYDITLLTGDGIGPEITQATVAALAPL-EKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEE-SKNYPEVELNHMYADNA 827
            M Y  + + A+L  ++AF   P    R    +  MAV K DSY ITLL GDGIGPEIT AT   L  L ++ GF M  KEALIGG A+D  N PFP+E+L+QC  SDSVLL+CIGGYKWD NPRELRPETGLL+MRKEMGLFANLRPAKVIPQL+ ASTLK EV+EGVD+MVVRELTGDVYFGTPKG E RDG+RV +NNMIY E EI RIA+VA DVA KRG  + S+DKANVLDVSQLWR+V  +  +K +P+VEL+HMY DNA
Sbjct:    5 MSYRCMAVAALLGASSAFTPAPTAFQRTQRTSLNMAVPKSDSYSITLLPGDGIGPEITTATKEVLGALCKRCGFTMEMKEALIGGCAIDEKNDPFPEETLKQCLESDSVLLACIGGYKWDSNPRELRPETGLLKMRKEMGLFANLRPAKVIPQLLDASTLKREVVEGVDVMVVRELTGDVYFGTPKGIEERDGQRVGFNNMIYGENEIVRIARVAGDVASKRGGKLCSVDKANVLDVSQLWREVTTDTITKEFPDVELSHMYVDNA 270
[Close]
BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: D7G282_ECTSI (3-isopropylmalate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G282_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 1.080e-107
Identity = 175/259 (67.57%), Postives = 206/259 (79.54%), Query Frame = 3 
Query:   69 ILQIANAFVGTPLMGARG-----SARTFMAVEKKDSYDITLLTGDGIGPEITQATVAALAPLEKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGT-ETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEESKNYPEVELNHMYADNA 827
            +++ A AFVG+P++ AR      S +  M  E KDSYD+ LL GDGIGPEIT ATV AL PL+ L FK+NFKEALIGGAA+DA   P+PD +L   K SDS+LL+ IGG KWD NPRELRPETGLL MR ++GLFANLRPAKV+ +L+ AS+LK E++EGVDIMVVRELTGDVYFGTPKG  E   G+RV YNNMIY E E+ RIAKVA+DVAMKRGK + S+DKANVLDVSQLWRDVVI+ S++YPEVEL H Y DNA
Sbjct:   16 LIEQAQAFVGSPVLRARAFSPSTSHKLSMVTEAKDSYDVMLLPGDGIGPEITAATVNALEPLQSL-FKLNFKEALIGGAAIDAEGSPWPDSTLALAKASDSILLAAIGGPKWDGNPRELRPETGLLAMRSQLGLFANLRPAKVMKELVDASSLKPEIVEGVDIMVVRELTGDVYFGTPKGIDELPSGERVGYNNMIYHEHEVERIAKVAYDVAMKRGKRLCSVDKANVLDVSQLWRDVVIKMSEDYPEVELTHQYVDNA 273
[Close]
BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Match: A0A7S0F2Y7_9CRYP (3-isopropylmalate dehydrogenase n=3 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0F2Y7_9CRYP)

HSP 1 Score: 337 bits (864), Expect = 2.280e-107
Identity = 171/231 (74.03%), Postives = 189/231 (81.82%), Query Frame = 3 
Query:  138 MAVEKKDSYDITLLTGDGIGPEITQATVAAL-APLEKLGFKMNFKEALIGGAALDAVNHPFPDESLEQCKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIPQLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMIYDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEESKNYPEVELNHMYADNA 827
            MAV+KKDSY +T L GDGIGPEI  ATV    A   K GFKM FKEALIGGAALDA N PFPDE+L+Q K SDSVLL+ IGG KWD NPR+ RPETGLL+MRK +GLFANLRPA V+PQL  ASTLK EV+ GVDIMVVRELTGDVYFG PKG  T+DG+R  YNNM Y E E+RRIAKVAFD+A KRGK V S+DKANVLDVSQLWRDVVIE  K+YP+VEL+HMY DNA
Sbjct:   49 MAVKKKDSYFVTTLPGDGIGPEIMAATVKVCQAVAAKQGFKMEFKEALIGGAALDACNDPFPDETLKQMKSSDSVLLAAIGGPKWDANPRDKRPETGLLKMRKSLGLFANLRPATVLPQLADASTLKPEVVSGVDIMVVRELTGDVYFGEPKGITTKDGERFGYNNMCYKESEVRRIAKVAFDIARKRGKRVCSVDKANVLDVSQLWRDVVIETHKDYPDVELSHMYVDNA 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1093.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1T6U9_HETAK7.370e-17899.623-isopropylmalate dehydrogenase n=1 Tax=Heterosigm... [more]
A0A7S2V595_9STRA2.010e-12278.663-isopropylmalate dehydrogenase n=1 Tax=Fibrocapsa... [more]
B7G1X8_PHATC8.650e-11369.473-isopropylmalate dehydrogenase n=2 Tax=Naviculale... [more]
A0A7S2UN91_9STRA6.560e-11171.433-isopropylmalate dehydrogenase n=1 Tax=Attheya se... [more]
A0A7S2P3R3_9STRA2.960e-10972.023-isopropylmalate dehydrogenase n=1 Tax=Leptocylin... [more]
A0A1E7F9J8_9STRA1.930e-10870.633-isopropylmalate dehydrogenase n=1 Tax=Fragilario... [more]
A0A7S0N7T0_9CRYP6.760e-10872.573-isopropylmalate dehydrogenase n=1 Tax=Cryptomona... [more]
A0A6S8RM19_9STRA7.180e-10866.543-isopropylmalate dehydrogenase n=1 Tax=Ditylum br... [more]
D7G282_ECTSI1.080e-10767.573-isopropylmalate dehydrogenase n=2 Tax=Ectocarpus... [more]
A0A7S0F2Y7_9CRYP2.280e-10774.033-isopropylmalate dehydrogenase n=3 Tax=Geminigera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1093contigH-akashiwo_Contig1093:42716..44439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr20934
PFAMsIso_dh
Model size1724
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.73e-117
EggNOG OGsCOG0473@1|root,KOG0786@2759|Eukaryota,2XAC4@2836|Bacillariophyta
DescriptionCatalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
Cds size1008
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387074.876732-UTR-H-akashiwo_Contig1093:42715..427531681387074.876732-UTR-H-akashiwo_Contig1093:42715..42753Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1093 42716..42753 +
1681387074.9016426-UTR-H-akashiwo_Contig1093:43761..444391681387074.9016426-UTR-H-akashiwo_Contig1093:43761..44439Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1093 43762..44439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387074.8883874-CDS-H-akashiwo_Contig1093:42753..437611681387074.8883874-CDS-H-akashiwo_Contig1093:42753..43761Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1093 42754..43761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1093.1.1prot_H-akashiwo_Contig1093.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1093 42754..43761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1093.1.1

>prot_H-akashiwo_Contig1093.1.1 ID=prot_H-akashiwo_Contig1093.1.1|Name=mRNA_H-akashiwo_Contig1093.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=336bp
MIYSILFILAILQIANAFVGTPLMGARGSARTFMAVEKKDSYDITLLTGD
GIGPEITQATVAALAPLEKLGFKMNFKEALIGGAALDAVNHPFPDESLEQ
CKGSDSVLLSCIGGYKWDKNPRELRPETGLLRMRKEMGLFANLRPAKVIP
QLMGASTLKEEVLEGVDIMVVRELTGDVYFGTPKGTETRDGKRVAYNNMI
YDEEEIRRIAKVAFDVAMKRGKNVYSIDKANVLDVSQLWRDVVIEESKNY
PEVELNHMYADNARHAAHPVAQAVRHHRVRQPLRGYHLRRGLHAGGLPGH
AAFRLHRRPVRPWRFEPCCGSARTLLARTRPTRWP*
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mRNA from alignment at H-akashiwo_Contig1093:42716..44439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1093.1.1 ID=mRNA_H-akashiwo_Contig1093.1.1|Name=mRNA_H-akashiwo_Contig1093.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1724bp|location=Sequence derived from alignment at H-akashiwo_Contig1093:42716..44439+ (Heterosigma akashiwo CCMP452)
GTTTTCAGGATCTTCCCTTTCCTTCCCAGCCGACCATAATGATTTACTCG
ATCTTGTTTATCCTTGCCATCCTTCAGATTGCGAATGCATTCGTTGGGAC
TCCCCTCATGGGGGCTAGAGGTTCAGCCAGGACCTTCATGGCAGTTGAGA
AGAAAGACTCCTACGACATTACCCTGCTGACTGGAGATGGGATCGGCCCT
GAAATTACCCAAGCAACCGTTGCTGCTCTTGCTCCTCTTGAAAAACTTGG
TTTTAAGATGAACTTTAAAGAGGCCCTCATTGGTGGTGCTGCCCTTGACG
CCGTCAACCACCCTTTCCCGGATGAATCCCTGGAGCAGTGCAAGGGTTCT
GACAGTGTGCTCCTCTCGTGCATCGGCGGTTACAAGTGGGACAAGAACCC
CCGCGAGTTGCGGCCAGAGACCGGGTTGCTGCGCATGCGCAAGGAGATGG
GTCTCTTCGCCAACCTGCGCCCTGCTAAGGTCATCCCCCAGCTGATGGGC
GCCTCAACCCTGAAGGAGGAGGTGCTGGAGGGCGTGGACATCATGGTGGT
CCGCGAGCTGACCGGCGACGTGTACTTCGGCACCCCCAAGGGCACGGAGA
CCCGGGATGGTAAGCGGGTGGCCTACAACAACATGATCTACGACGAGGAG
GAGATCCGGCGCATCGCCAAGGTGGCCTTCGACGTGGCCATGAAGCGGGG
GAAGAACGTGTACTCGATCGACAAGGCCAACGTGCTGGACGTCTCGCAGC
TGTGGCGGGACGTGGTCATTGAGGAGAGCAAGAACTACCCAGAGGTGGAG
CTCAACCACATGTACGCCGATAACGCCCGCCATGCAGCTCATCCGGTGGC
CCAAGCAGTTCGACACCATCGTGTGCGGCAACCTCTTCGGGGATATCATC
TCAGACGAGGCCTCCATGCTGGTGGGCTCCCTGGGCATGCTGCCTTCCGC
CTCCATCGGCGACCCGTCCGGCCCTGGCGTTTTGAGCCCTGCTGCGGCTC
CGCACGGACATTGCTGGCGAGGACAAGGCCAACCCGCTGGCCATGATCCT
GTCCGCCGCCATGATGCTCCGGTACGACCTGAGTCGCGCGGAGGAGGCGC
AGATGCTCGAGGACGCCGTGGAGCAGGTGCTGGATATCTGCCGCACCGTG
GACATCGCCGGCGGCGGGCTGCCCACCGTGGGCTGCAAGCAGATGGGCGA
GGAGGTGGCAAAGCTGGTGGCTGCGCTCGTCGAGAAGAAGCTCGTGGCCT
GAGAAGCTCCACCGTGGCTCCTCATATTTCTTCTATGTAGCTTTCTTTTT
TCTTTTTCTTTCTGTGTTTTGACATGAGGTGAAAATGATGATAACCAGCG
TACCCACTGCTGCTACCGCCCATCTTTATCTGATTTTGAAGCTGGTTAGT
GTGGTGGCCGAGGTGGGCGTGCAAGGGAAGGGCTCTGTGAGCTCTTGGGT
ATACAGGGGGGGATCCCCAGTTTAACGCCTCCCAGATTGTCGCCATCCCC
AGTTTGTCGCCTATTTTTGCGCTGCGCAATTTTTTCAACTTCTTCTTCTT
CTACTGTCCCCCCCAGGCTCCGCCCCTCGGAGTCTGCGCGCGCCCACGCG
GACACAGGCGGACCcgcgCGCACATAAAAAAAAAACTATAACAGTCGGTG
AGGAAATGACAAGGAGGAGGATCAGGAGGATAGCAGGCATATCATACACA
CACACTGCAACCGTGGCTTGAAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1093:42716..44439+

>mRNA_H-akashiwo_Contig1093.1.1 ID=mRNA_H-akashiwo_Contig1093.1.1|Name=mRNA_H-akashiwo_Contig1093.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1008bp|location=Sequence derived from alignment at H-akashiwo_Contig1093:42716..44439+ (Heterosigma akashiwo CCMP452)
ATGATTTACTCGATCTTGTTTATCCTTGCCATCCTTCAGATTGCGAATGC
ATTCGTTGGGACTCCCCTCATGGGGGCTAGAGGTTCAGCCAGGACCTTCA
TGGCAGTTGAGAAGAAAGACTCCTACGACATTACCCTGCTGACTGGAGAT
GGGATCGGCCCTGAAATTACCCAAGCAACCGTTGCTGCTCTTGCTCCTCT
TGAAAAACTTGGTTTTAAGATGAACTTTAAAGAGGCCCTCATTGGTGGTG
CTGCCCTTGACGCCGTCAACCACCCTTTCCCGGATGAATCCCTGGAGCAG
TGCAAGGGTTCTGACAGTGTGCTCCTCTCGTGCATCGGCGGTTACAAGTG
GGACAAGAACCCCCGCGAGTTGCGGCCAGAGACCGGGTTGCTGCGCATGC
GCAAGGAGATGGGTCTCTTCGCCAACCTGCGCCCTGCTAAGGTCATCCCC
CAGCTGATGGGCGCCTCAACCCTGAAGGAGGAGGTGCTGGAGGGCGTGGA
CATCATGGTGGTCCGCGAGCTGACCGGCGACGTGTACTTCGGCACCCCCA
AGGGCACGGAGACCCGGGATGGTAAGCGGGTGGCCTACAACAACATGATC
TACGACGAGGAGGAGATCCGGCGCATCGCCAAGGTGGCCTTCGACGTGGC
CATGAAGCGGGGGAAGAACGTGTACTCGATCGACAAGGCCAACGTGCTGG
ACGTCTCGCAGCTGTGGCGGGACGTGGTCATTGAGGAGAGCAAGAACTAC
CCAGAGGTGGAGCTCAACCACATGTACGCCGATAACGCCCGCCATGCAGC
TCATCCGGTGGCCCAAGCAGTTCGACACCATCGTGTGCGGCAACCTCTTC
GGGGATATCATCTCAGACGAGGCCTCCATGCTGGTGGGCTCCCTGGGCAT
GCTGCCTTCCGCCTCCATCGGCGACCCGTCCGGCCCTGGCGTTTTGAGCC
CTGCTGCGGCTCCGCACGGACATTGCTGGCGAGGACAAGGCCAACCCGCT
GGCCATGA
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