mRNA_H-akashiwo_Contig1092.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1092.5.1
Unique NamemRNA_H-akashiwo_Contig1092.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1092.5.1 vs. uniprot
Match: A0A6V1LZF5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LZF5_HETAK)

HSP 1 Score: 128 bits (322), Expect = 2.690e-34
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 MLAGTKGVDLQKQDELGRTLRQWTDDRLWTKLAEELGLEDDGELDERKSAPNRQSSVGRRRDSVSQ 198
            MLAGTKGVDLQKQDELGRTLRQWTDDRLWTKLAEELGLEDDGELDERKSAPNRQSSVGRRRDSVSQ
Sbjct:  290 MLAGTKGVDLQKQDELGRTLRQWTDDRLWTKLAEELGLEDDGELDERKSAPNRQSSVGRRRDSVSQ 355
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1092.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1LZF5_HETAK2.690e-34100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1092contigH-akashiwo_Contig1092:302018..305284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size200
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387074.643942-CDS-H-akashiwo_Contig1092:302017..3021151681387074.643942-CDS-H-akashiwo_Contig1092:302017..302115Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1092 302018..302115 -
1681387074.654213-CDS-H-akashiwo_Contig1092:305184..3052841681387074.654213-CDS-H-akashiwo_Contig1092:305184..305284Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1092 305185..305284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1092.5.1prot_H-akashiwo_Contig1092.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1092 302018..305284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1092.5.1

>prot_H-akashiwo_Contig1092.5.1 ID=prot_H-akashiwo_Contig1092.5.1|Name=mRNA_H-akashiwo_Contig1092.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=66bp
MLAGTKGVDLQKQDELGRTLRQWTDDRLWTKLAEELGLEDDGELDERKSA
PNRQSSVGRRRDSVSQ
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mRNA from alignment at H-akashiwo_Contig1092:302018..305284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1092.5.1 ID=mRNA_H-akashiwo_Contig1092.5.1|Name=mRNA_H-akashiwo_Contig1092.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3267bp|location=Sequence derived from alignment at H-akashiwo_Contig1092:302018..305284- (Heterosigma akashiwo CCMP452)
ATGCTAGCAGGGACAAAGGGGGTTGATCTTCAGAAGCAAGACGAGTTAGG
GAGGACACTACGCCAATGGACTGATGACCGACTCTGGACCAAGTTGGCTG
GTTGGTTGCCCTGGGTCCGGGAAAGTGGGCCATGTTTCAGTTTGTTCTTT
CAGTGCCGCCGGTATTCTTCCATTCCCTTCTCGTTGCGTCTTCCCAGAAA
ATACTTATTCCTGTTACTTCCTGGTATTGAATTGATTTCACATTTTTTAT
TTTATGAGGTTATGGATCACTTTTCCTTGTTTATATTTGGTTTTAACAGT
GCTGCTTGTGGTATGAAATCACTGCAAAACCCTATACCATGGAAATCACT
CTTTCCCGGGCTCTTTGACTATATATAATTTAACCATGCTCGGGGTGATA
TACATACAGTGGCTGGAAATGGACGGTCTTATTGTGCTGGGGGACCCAGG
GTTCAGTTTGGGGAACATGCTTAGAAAAATTGAGAGACTGGCACAAGGTT
TGTGAAGCGAACGGGGCGTCTTGATTTCTGAGGGGTTCAGAAGCATGGTT
GGATAGAAATGTGTTTGAGTGAATTGTTCTTGTGTTCTTATGATAATTGA
AGTGTGGTGGTATTGGGGAATGGTAGATTAAGGTGGAAGGGTCTGCTTTT
AGAAGCTAGGGGTTATCCCGAAAGCGGGTTGAAAGGCTAGACTGAAAACA
AAAGTGATCGTCATCAATATTATATTTAAGGAGCCATAATTGTTATACGA
TGCTTTGTATACAAGGCAGCCCAGCTGGAGGCTAGGGGGCCAGGCCATGG
TGGCCAGCCCCCAAAGGAGAGAGTGTATAGTTTTATTGTGGATTATTTAT
GGTTATGATGAGAAAGGGAAACAAGGTTGGTTCACAGCACGTAGTCTATG
AACAGCATCAGGATGGCAACACCTCAAGGATGGCTGTTGCCAGCACAGAC
ATGAGCAGCTGCTAAATGGGTGGCTGCTAGCATAGTTTTTGTTGTTGTAC
GTCAGTCACACATCATCATCAAGTCATCAGGTGTTGTTCACTTTGTAAAT
GCGTGTGGTTTGTGTTCAACAAACCAACTGCTGTGATGCTGTGTAAGCGG
ACAATGCCGCAAAACAACGTTACACGTTGTTTGTGGCATCGTCCAGTTCA
CACAGCTACACAGCCCAGTAAGCTTAGTCCCTGACTTCCTAGTCACAAAG
CCTGGTTCGATCCCCGTTGACAACCATCTTGGTTGGCAACACCGCCTTTT
CTTCTACTTCTTCTATCTTCAGAGAAGAAGAAGTTGCAGCTCTCTTCTGA
TTGGTTGTAGGCACAAGCATGACGTGCGCTAGTCACGTGTCAGCATGAAG
TACTACTACTTACTGTTGTTCTTATAGGTTCCTGTTGTTGTTGGAAGCAG
CACGAGCGCTGCACTACATTCACTTTCATCCAGATTTATAATAAGACAAA
TATTTGTTGAAGGCTCGCCTTCCCCATCATAGGCCGCCTGGCCTCTTGTC
ATGGTATTGTACCACTAGTCCATTACTAGTGCACTCTTACAAAACATCGG
TCATGGGTTCTTCTCTCGCAGACTTCTCTGCAAAGCGATACCTTCTTCCC
TGCTCAATCCTCTGTCAGCTTGCCAGTGCTGAGCATTCAGACGTAACGAC
GATAGCTCCTTTTGCTGCCGGCGGACTATGTACACTTCGAGGACAAAAGT
ATATCATGATTGCAACTGGAAAGTATCTTCTTCATCCTCTTCTCAGATGG
GATGCGATTCTCAGATTTCCTTTCTGGTTTCTTGTTCTGCCTATGGGATT
TTACACACTACTGTAATCAATTACGAGGTTTCATTAGCCAAACGGATCGT
TCTGCTTTTGCATCAGTCATATTGCGTTAGTGCAATGAAACAAGGCTTCG
CGAATTCAATGACTCTTCTGTTATCTCTGAAAGTTTGATCACTGGTCTTG
CCAGGCACATCAATTAATAATGATATTATTTGTTCAACTTTGGAAGCTTT
TGTGATATCTGGTCTCTTCGTGGTCATTCTTAATTCTCCTATCTCTGAAA
GTTTGAGGCGGATCAAGCAATCTCTTTTTGGGAAACGGGTGCATTGGCTA
TGTTTGAGGGGCAAACCCTAGTTTTATATTTTGGCTCTCTCTTCTTTATT
TTTACTCCTAGCCTCATTGACAGCTCAAGGACTTTCTTTGCAGGAAATAG
AACCTTGGTCTACCACTTGCTCTCAAGTGGCTCCTTGCTTTAACCCTTTT
TGATGGGGTTTCTACGTGGATTCTTTGATGGTAATTCAGCAATTTTCTAC
TTTATTTCAACTTTGGTGGATTTTTACTTTTGATGGAGTTCAACTTCTGG
TGGAGCTTTCCTACTGGTGGAGTTCTTCTTCACACAGCTTCAGCTTTGCC
CAGTGGTGGAGATTTATATTCTCTTGCTACTGCTGCTGTGCTCACCTGTC
CGCTGTGGTGGAGCGTTGTTTGTGGCATCGTCCAGTTCACACAGCTACAC
AGCCCAGTAAGCTTAGTCCCTGACTTCCTAGTCACAAAGCCGGGTTCGAT
CCCCGTTGACGACCATCTTGGTTGGCAACACCGGCCGGCCTTTCTTCTAC
TTCTTCTATCTTCAGAGAAGAAGAAGTTGCAGCTCTCTTCTGATTGGTTG
TAGGTACAAGCATGACGTGCGCTAGTCACGTGTAAGCATGAAGTACTACT
ACTTACTACTGTTGTTCTTATAGTTTCCTTTTGTTGTTGGAAGCAGCACC
TAGCGCTGCACTACATTCACTTTCATCCAGATTTATATATTTTTTTTTTT
TTGTCTACGTATAAGCACAAAGTGGAGAAAATAGTTCAGCTAGGCTATGA
TGCTAATAAGACAAATATTTGTTGAAGGCTCGCCTTCCCCATCATAGGCC
GCCTGGCCTCTTGTCATGGCATTATACCACTAGTCCATTACTAGGGCACT
CTTACAAAACATCGTTTATATATATATATGAACAATAATATACCAGAATC
GTGCTCCAACAACAAGCAGAGCTGCAACCGACATGGCAAATAACGAACCC
ATCATACACCCACCAAATATATTTTATATATATATATTATATATCGATAC
TCAGCCAGGCAGTAGTATTGTATATGTAACGGTAGTGGATACCAACACCC
GCCGCCCTGGGGGGTTCAGAGGAACTCGGGCTGGAGGACGATGGAGAGCT
CGATGAGCGCAAGAGTGCTCCCAACCGACAGAGCAGTGTGGGGCGGCGCA
GGGACAGCGTTTCTCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1092:302018..305284-

>mRNA_H-akashiwo_Contig1092.5.1 ID=mRNA_H-akashiwo_Contig1092.5.1|Name=mRNA_H-akashiwo_Contig1092.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=198bp|location=Sequence derived from alignment at H-akashiwo_Contig1092:302018..305284- (Heterosigma akashiwo CCMP452)
ATGCTAGCAGGGACAAAGGGGGTTGATCTTCAGAAGCAAGACGAGTTAGG
GAGGACACTACGCCAATGGACTGATGACCGACTCTGGACCAAGTTGGCTG
AGGAACTCGGGCTGGAGGACGATGGAGAGCTCGATGAGCGCAAGAGTGCT
CCCAACCGACAGAGCAGTGTGGGGCGGCGCAGGGACAGCGTTTCTCAG
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