mRNA_H-akashiwo_Contig1092.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1092.3.1
Unique NamemRNA_H-akashiwo_Contig1092.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 203 bits (517), Expect = 5.210e-61
Identity = 89/126 (70.63%), Postives = 111/126 (88.10%), Query Frame = 1
Query:    1 WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGRRARWIMTL 378
            W DDCEW++Q +KD L S P+L+YPR+D+PFIVETDAS  GLGA+L Q+T  G +P+AYASR+CS TEANYSATELECLGVIYA+QQFRCY++GRE+TL+TDH++L+ LK  KNP+GRRARW+MTL
Sbjct:  365 WDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYASRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWLMTL 490          
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 203 bits (517), Expect = 1.490e-59
Identity = 89/126 (70.63%), Postives = 111/126 (88.10%), Query Frame = 1
Query:    1 WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGRRARWIMTL 378
            W DDCEW++Q +KD L S P+L+YPR+D+PFIVETDAS  GLGA+L Q+T  G +P+AYASR+CS TEANYSATELECLGVIYA+QQFRCY++GRE+TL+TDH++L+ LK  KNP+GRRARW+MTL
Sbjct:  365 WDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYASRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWLMTL 490          
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 157 bits (396), Expect = 9.770e-45
Identity = 70/96 (72.92%), Postives = 83/96 (86.46%), Query Frame = 1
Query:    1 WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGRE 288
            WTDDCEW++Q LKD L + PILI+P F++ F +ETDAS  GLGA+LSQ+T  GRKPVAYASRVC+S EANYSATELECLGVI+ +QQFRCYILGR+
Sbjct:  227 WTDDCEWAFQNLKDTLTTAPILIFPNFNKEFTIETDASKHGLGAILSQDTTEGRKPVAYASRVCNSAEANYSATELECLGVIFGIQQFRCYILGRQ 322          
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A1B6MF56_9HEMI (RT_RNaseH_2 domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6MF56_9HEMI)

HSP 1 Score: 140 bits (354), Expect = 1.040e-40
Identity = 68/126 (53.97%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGRRARWIMTL 378
            W   C  +++TLK+KLVSTP+LI+P F +PFI+ TDAS   LGAVLSQE D    PVAYASR     E NYS TE E LG+++A + FRCY+LGRE+  +TDH AL+ +   K+PS R  RW + L
Sbjct:    5 WDQACHAAFETLKEKLVSTPVLIFPDFSKPFILATDASLDALGAVLSQEIDGEEHPVAYASRTLFPAEKNYSTTERELLGLVWATKYFRCYLLGREFRAVTDHAALKWMLSLKDPSSRLTRWSLRL 130          
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A1B6LP54_9HEMI (RNA-directed DNA polymerase n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6LP54_9HEMI)

HSP 1 Score: 141 bits (355), Expect = 2.040e-36
Identity = 65/126 (51.59%), Postives = 91/126 (72.22%), Query Frame = 1
Query:    1 WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGRRARWIMTL 378
            WTD+CE ++++LK+KL+S PIL+YP F +PF++ TDAS  GLGA+L+   D    P+ YASR  +S+E NYSATELE L VI+AV+ FRCY+ G  +TL+TDH A++ L   K+ + R  RW + L
Sbjct:  511 WTDECEQAFKSLKEKLMSEPILVYPDFSKPFLLSTDASSVGLGAILANVIDGQEHPICYASRQLNSSERNYSATELEMLAVIWAVKYFRCYLTGVHFTLVTDHSAIRWLLSLKDSTSRLTRWALKL 636          
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A224XDN8_9HEMI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XDN8_9HEMI)

HSP 1 Score: 139 bits (350), Expect = 9.610e-36
Identity = 65/126 (51.59%), Postives = 93/126 (73.81%), Query Frame = 1
Query:    1 WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGRRARWIMTL 378
            WTD+ + +++ LK+ LV+ P+L  P F+ PF+++TDAS  GLGA+LSQ  + G KP+A+ASR  +  E N+S TELECL V++AV++FR Y+ G E+T+ITDH+AL  LK  K+P GR ARW M +
Sbjct:  493 WTDNQDKAFKELKEVLVTAPVLTCPDFNHPFLLQTDASQSGLGAILSQNLEEGEKPIAFASRSLTRNEKNFSTTELECLAVLWAVEKFRPYLEGIEFTVITDHRALLWLKSLKDPQGRLARWAMKI 618          
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A1B6K8D1_9HEMI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6K8D1_9HEMI)

HSP 1 Score: 138 bits (348), Expect = 1.730e-35
Identity = 65/126 (51.59%), Postives = 91/126 (72.22%), Query Frame = 1
Query:    1 WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGRRARWIMTL 378
            WT +CE +++TLK+KLV+ P+L YP F + FIV TDAS + + A+LSQ  D   +P+AY SRVC+  E+ YSATELE L +I A++ +RCY+ GR + +ITDH AL++L   K+PS R ARW + L
Sbjct:  351 WTAECEQAFETLKEKLVTYPVLAYPDFSKEFIVATDASSKSIAAILSQVQDGVERPIAYWSRVCNPAESRYSATELEMLALISAIKHWRCYLYGRHFHVITDHAALKYLLSLKDPSSRLARWGLKL 476          
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A1B6JD37_9HEMI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6JD37_9HEMI)

HSP 1 Score: 132 bits (332), Expect = 1.910e-35
Identity = 63/126 (50.00%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGRRARWIMTL 378
            WT + E ++Q +K  L+S PIL  P F +PF +  DASG G+GAVLSQ+++ G   VAYASR  +  E N+SATE ECL VI+AV++FR Y+ G  +T++TDH +L  L   K+P+GR ARW + L
Sbjct:   24 WTPEAEMAFQDVKSCLISAPILSCPDFSKPFTISCDASGVGIGAVLSQDSEQGESVVAYASRTLTRQEQNFSATERECLAVIFAVEKFRPYVEGTRFTVVTDHYSLLWLSNLKDPTGRLARWALRL 149          
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A6A3QF82_9STRA (RT_RNaseH domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QF82_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.020e-35
Identity = 63/129 (48.84%), Postives = 88/129 (68.22%), Query Frame = 1
Query:   16 EWSWQTLKDK--------LVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGRRARWIMTL 378
            EW+W   +++        L + P+L+YP +D PF + T+AS  GLGAVLSQ+   G +PVAYAS+V S   ANYS +ELECL V++AV+ FR ++ GR +T++TDH AL+ L  TK P+GR  RW +TL
Sbjct:   13 EWAWGAAQEEAFTWAKAWLSTKPVLVYPNYDLPFNLTTEASKAGLGAVLSQDQGRGDQPVAYASKVNSPAVANYSISELECLAVVWAVRLFRSHLYGRRFTIVTDHVALKWLMTTKEPAGRLPRWALTL 141          
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Match: A0A8J6LJE6_TENMO (RT_RNaseH_2 domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LJE6_TENMO)

HSP 1 Score: 130 bits (327), Expect = 2.190e-35
Identity = 59/126 (46.83%), Postives = 88/126 (69.84%), Query Frame = 1
Query:    1 WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGRRARWIMTL 378
            WT + + ++Q +KD LVS P+L  P F +PF+++TDAS  GLGAVL+Q+ D   + +AYASR  +  E NYS TE ECL V++A+++FR Y+ G  +T++TDH +L  L   K+P+G+ ARW + L
Sbjct:   19 WTPEAQEAFQKIKDALVSAPVLSSPDFSKPFVIQTDASDTGLGAVLTQDLDGDERVIAYASRSLTKAERNYSVTERECLAVLFALEKFRPYVEGTHFTIVTDHYSLLWLNRMKDPAGKLARWSVKL 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1092.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK5.210e-6170.63Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK1.490e-5970.63Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK9.770e-4572.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1B6MF56_9HEMI1.040e-4053.97RT_RNaseH_2 domain-containing protein (Fragment) n... [more]
A0A1B6LP54_9HEMI2.040e-3651.59RNA-directed DNA polymerase n=1 Tax=Graphocephala ... [more]
A0A224XDN8_9HEMI9.610e-3651.59RNA-directed DNA polymerase (Fragment) n=1 Tax=Pan... [more]
A0A1B6K8D1_9HEMI1.730e-3551.59RNA-directed DNA polymerase (Fragment) n=1 Tax=Gra... [more]
A0A1B6JD37_9HEMI1.910e-3550.00RNA-directed DNA polymerase (Fragment) n=1 Tax=Hom... [more]
A0A6A3QF82_9STRA2.020e-3548.84RT_RNaseH domain-containing protein n=1 Tax=Phytop... [more]
A0A8J6LJE6_TENMO2.190e-3546.83RT_RNaseH_2 domain-containing protein n=1 Tax=Tene... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1092contigH-akashiwo_Contig1092:213977..214354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog936053.I1CPR9
PFAMsAsp_protease_2,RVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC
Model size378
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.21e-34
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,1GWQ7@112252|Fungi incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size378
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387074.763349-CDS-H-akashiwo_Contig1092:213976..2143541681387074.763349-CDS-H-akashiwo_Contig1092:213976..214354Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1092 213977..214354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1092.3.1prot_H-akashiwo_Contig1092.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1092 213977..214354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1092.3.1

>prot_H-akashiwo_Contig1092.3.1 ID=prot_H-akashiwo_Contig1092.3.1|Name=mRNA_H-akashiwo_Contig1092.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=126bp
WTDDCEWSWQTLKDKLVSTPILIYPRFDRPFIVETDASGQGLGAVLSQET
DHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLI
TDHQALQHLKMTKNPSGRRARWIMTL
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mRNA from alignment at H-akashiwo_Contig1092:213977..214354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1092.3.1 ID=mRNA_H-akashiwo_Contig1092.3.1|Name=mRNA_H-akashiwo_Contig1092.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=378bp|location=Sequence derived from alignment at H-akashiwo_Contig1092:213977..214354- (Heterosigma akashiwo CCMP452)
TGGACCGATGACTGTGAATGGTCATGGCAGACACTGAAGGACAAACTAGT GTCAACACCAATACTGATATACCCAAGGTTCGACAGACCCTTCATAGTGG AAACAGATGCATCAGGACAAGGATTGGGAGCTGTATTATCACAGGAAACA GATCATGGAAGGAAACCAGTAGCATATGCCAGCAGAGTATGTAGTTCTAC TGAAGCCAATTACAGTGCTACGGAGCTGGAATGCCTGGGAGTGATATATG CAGTACAGCAATTTAGATGTTACATTCTAGGAAGAGAATGGACATTGATT ACGGATCACCAAGCCCTCCAACACCTCAAGATGACGAAAAACCCATCAGG AAGACGGGCCAGATGGATTATGACATTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1092:213977..214354-

>mRNA_H-akashiwo_Contig1092.3.1 ID=mRNA_H-akashiwo_Contig1092.3.1|Name=mRNA_H-akashiwo_Contig1092.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=378bp|location=Sequence derived from alignment at H-akashiwo_Contig1092:213977..214354- (Heterosigma akashiwo CCMP452)
TGGACCGATGACTGTGAATGGTCATGGCAGACACTGAAGGACAAACTAGT
GTCAACACCAATACTGATATACCCAAGGTTCGACAGACCCTTCATAGTGG
AAACAGATGCATCAGGACAAGGATTGGGAGCTGTATTATCACAGGAAACA
GATCATGGAAGGAAACCAGTAGCATATGCCAGCAGAGTATGTAGTTCTAC
TGAAGCCAATTACAGTGCTACGGAGCTGGAATGCCTGGGAGTGATATATG
CAGTACAGCAATTTAGATGTTACATTCTAGGAAGAGAATGGACATTGATT
ACGGATCACCAAGCCCTCCAACACCTCAAGATGACGAAAAACCCATCAGG
AAGACGGGCCAGATGGATTATGACATTA
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