mRNA_H-akashiwo_Contig1090.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1090.2.1
Unique NamemRNA_H-akashiwo_Contig1090.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: A0A6V2U0S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2U0S1_HETAK)

HSP 1 Score: 132 bits (332), Expect = 3.220e-36
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 ENEKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADL 189
            ENEKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADL
Sbjct:   58 ENEKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADL 120
[Close]
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: A0A1W9R6Y3_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium 4484_249 TaxID=1970778 RepID=A0A1W9R6Y3_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 3.550e-16
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    7 EKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADL 189
            +K  ++TGSTDGIG+ T+ +LA+TGA VI+HGRN  R +   + IKD TGN+ IDYFVADL
Sbjct:    6 DKTILITGSTDGIGKQTAIELAQTGANVIIHGRNQQRTKIVYEAIKDKTGNDSIDYFVADL 66
[Close]
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: A0A0M3RAW7_9BACI (Uncharacterized protein n=1 Tax=Bacillus gobiensis TaxID=1441095 RepID=A0A0M3RAW7_9BACI)

HSP 1 Score: 76.6 bits (187), Expect = 2.860e-15
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    7 EKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVAD 186
            +K+F+VTGSTDGIG+HT+  LA  GA V++HGRN  +C   ++ I   TGNEK+ Y+VAD
Sbjct:    6 DKVFLVTGSTDGIGKHTALSLANMGATVLLHGRNPDKCVTVMEQISKRTGNEKLHYYVAD 65
[Close]
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: UPI001969EA24 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=unclassified Flavobacterium TaxID=196869 RepID=UPI001969EA24)

HSP 1 Score: 72.8 bits (177), Expect = 1.710e-14
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   10 KIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADL 189
            K  ++TGSTDGIG+ T+ +LA+ G  VIVHGRN A+ E+  + IK  TGN K+DY +ADL
Sbjct:    4 KTILITGSTDGIGKITATELAKQGNTVIVHGRNKAKAEKVCEEIKATTGNNKVDYIIADL 63
[Close]
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: A0A1F9NFM9_9DELT (3-oxoacyl-ACP reductase n=2 Tax=Bacteria TaxID=2 RepID=A0A1F9NFM9_9DELT)

HSP 1 Score: 73.6 bits (179), Expect = 4.330e-14
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    7 EKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADL 189
            E+I +VTGSTDGIG+ T++KLA  GA V++HGR+  +CE TV  I++ TGN+K+  FV +L
Sbjct:    6 EQIILVTGSTDGIGKITARKLARLGATVLIHGRSPEKCETTVGEIREATGNDKLKAFVRNL 66
[Close]
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: A0A1L7H7G4_SACKO (Retinol dehydrogenase 14-like protein 094 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=A0A1L7H7G4_SACKO)

HSP 1 Score: 72.8 bits (177), Expect = 7.340e-14
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   10 KIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVAD 186
            +++++TGSTDGIG+HT+ +LA+ G  V+VHGRN A+ E+ V+ +K  TGN  I+ F AD
Sbjct:    6 RVYLITGSTDGIGKHTALRLAQAGGTVLVHGRNRAKGEKVVEELKTATGNPNIELFTAD 64
[Close]
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: A0A3B1CGP9_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1CGP9_9ZZZZ)

HSP 1 Score: 72.4 bits (176), Expect = 1.000e-13
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   10 KIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADL 189
            KI ++TG+TDGIG+ T+ +LA+ GA++IVHGRN  +C +TV  I D TGN  ID+  ADL
Sbjct:    4 KIILITGATDGIGKQTAIELAKFGAKIIVHGRNNEKCIKTVAEITDKTGNSDIDHLSADL 63
[Close]
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: A0A7V0YJR1_9BACT (SDR family oxidoreductase n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V0YJR1_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-13
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   10 KIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVAD 186
            KI ++TGSTDGIG+ T+ +LAE   ++I+HGR+  +C  T+  IK  TGN+KIDY VAD
Sbjct:    3 KIILITGSTDGIGKQTALELAERNNQIIIHGRDEKKCISTLNEIKSKTGNQKIDYVVAD 61
[Close]
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: A0A661WK48_9CHLR (Short-chain dehydrogenase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A661WK48_9CHLR)

HSP 1 Score: 72.4 bits (176), Expect = 1.200e-13
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   10 KIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVAD 186
            KI++VTG+T GIG+ T+  LA  GA+++VHGRN A+ EETVQ IK  TGN+++ Y +AD
Sbjct:   10 KIYLVTGATAGIGKVTASALAGQGAQLVVHGRNKAKTEETVQEIKASTGNQQVSYLLAD 68
[Close]
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Match: A0A7Y5GM07_9BACT (SDR family oxidoreductase n=1 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A7Y5GM07_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 2.710e-13
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    7 EKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADL 189
            +K+ ++TGSTDGIG+ T+ KLA TGA V++HGRN  +C  T   I   TGN K+D+ V+D+
Sbjct:    3 DKVILITGSTDGIGKQTAIKLAGTGAAVVIHGRNKEKCVHTRDEIFARTGNTKVDFLVSDI 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1090.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V2U0S1_HETAK3.220e-36100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1W9R6Y3_9BACT3.550e-1659.02Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A0M3RAW7_9BACI2.860e-1555.00Uncharacterized protein n=1 Tax=Bacillus gobiensis... [more]
UPI001969EA241.710e-1455.00SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A1F9NFM9_9DELT4.330e-1454.103-oxoacyl-ACP reductase n=2 Tax=Bacteria TaxID=2 R... [more]
A0A1L7H7G4_SACKO7.340e-1450.85Retinol dehydrogenase 14-like protein 094 n=1 Tax=... [more]
A0A3B1CGP9_9ZZZZ1.000e-1355.00Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A7V0YJR1_9BACT1.100e-1354.24SDR family oxidoreductase n=1 Tax=Ignavibacteria b... [more]
A0A661WK48_9CHLR1.200e-1355.93Short-chain dehydrogenase n=1 Tax=Chloroflexi bact... [more]
A0A7Y5GM07_9BACT2.710e-1350.82SDR family oxidoreductase n=1 Tax=Ignavibacteriace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1090contigH-akashiwo_Contig1090:38078..39698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7668.SPU_011085-tr
PFAMsadh_short
Model size191
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.88e-16
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota,3A7IF@33154|Opisthokonta,3BZFW@33208|Metazoa,3DDM3@33213|Bilateria
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size189
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387074.1088176-CDS-H-akashiwo_Contig1090:38077..381501681387074.1088176-CDS-H-akashiwo_Contig1090:38077..38150Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1090 38078..38150 -
1681387074.1181107-CDS-H-akashiwo_Contig1090:39582..396981681387074.1181107-CDS-H-akashiwo_Contig1090:39582..39698Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1090 39583..39698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1090.2.1prot_H-akashiwo_Contig1090.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1090 38078..39698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1090.2.1

>prot_H-akashiwo_Contig1090.2.1 ID=prot_H-akashiwo_Contig1090.2.1|Name=mRNA_H-akashiwo_Contig1090.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
ENEKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDI
TGNEKIDYFVADL
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mRNA from alignment at H-akashiwo_Contig1090:38078..39698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1090.2.1 ID=mRNA_H-akashiwo_Contig1090.2.1|Name=mRNA_H-akashiwo_Contig1090.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1621bp|location=Sequence derived from alignment at H-akashiwo_Contig1090:38078..39698- (Heterosigma akashiwo CCMP452)
GAGAACGAAAAGATCTTTGTTGTAACGGGTTCAACCGACGGGATAGGCCG
TCACACATCCAAAAAACTTGCTGAAACTGGAGCTCGTGTGATCGTCCATG
GCCGTAATACAGCAAGGTAATTTAATCCGGGAGTGGAAATGATCGCACGC
ACGCACACATCATTAAAAAAAAAAAAAAAAAACTGACACTAAACAATCAT
TACATGTTGTTAGAATTCAGGGCTCCAAATGGCACCCATGGTGCAGAGCA
CCAGGTGTTAGCAAGACCACCTGCTACAGATGCTTATATATTGACAAAAC
TGAAAGTCCTTGAAAATAATCTTGTGAAAAGTCCGGTTATTATTGAATCA
TGAAAAATAGAAAGCACAATAACATGAAAAATGAGCAGTATCACAAAGAT
TGAAACTAACTACGAAAACAGTGTAGTTGATGTTGAACAAGAAGATGCCA
TGGAAGTTGGAACATCAACTTCAATCTTGATAGAGACCAAGATACAGATG
AAGAGAAGAACCACAGAAAGACCATGTTGAGGTTGAGGTAATCTCAGGAA
TAATATAGATTCGAGAGATCATCACTGTCAAGAATCATCATATTGCAATT
TTACCAAAGGTAGCAGTAGAGCATCAGTAAACTTGTCTTGACCGTAATGA
GGGTCGTTGACTGATTGAACTTGAACATGCAAGCTGTGAGTCTTGAGTAT
GCATCTAATCTATGTACATCGAAACCATACTGAGCTCTGTCGCGAAGTCC
ATATTTTCACTTGTGAACCACCACATACTTTTACGGTCAATGTCTTAGCA
ATTTTACAACAACACATTACATTATACTCCTCCAACCTTACGCAATTATC
TGCTCAACATTATGGGCCTCTTCTCAGCCAGGACTATAAAATGTAATTTT
GTGCAGCTTTGATATTGATATTTGGTGCTGCAGCTTTGATATTGATATGT
GTGAGAGAGTCAGTTGAATTTTTTGTTTGTCTTGATATTTATGACGGGTG
TGCAAAATAGTAGATGAATGAAGAATGTTTCTGACACAACATGGTATGCC
AACAGCCTGACTTTCGCTCTTATTGGAGCACATCAGCTGACAATAACCGC
GCGCACTAGCTGACAGCTACATCTTCAATTTCTTCTACTATATAGTAGTT
CGCAGATGGTTATGACAGAGGTGACCTGATGATGGGGCCTCTGTTGCCAG
CAGCTGTTGGTGTTGCCGAGTGAGGACTATCCTCTGTCCTTACAATGCAA
TAGTTGCTGGAAGCCATCATTAACTTAAAGGTTACAGGTGAAATAGTTGA
TGAGTTTTTTTTCTTTCTTGCATCCACCTGGTCGAAGCCAGATGTGAATT
TCAAACTTTCCAAGATCCAAATCTTTTGCAAAACGCTGAGCTCGGCATGG
TGCTAGGTAGGTGCTAGTAGTAATATTACAGCCATCGTAACATTATATCA
TCAAGCCTTTCATTTTTTCTCATTACAACTACTGGTCTTTGGTGTGTCTT
CACTCCTCTAAAGATGCATGGCACGCGACCTTGGTGTTGATGCAACAGGT
GTGAAGAAACTGTGCAATGGATCAAAGATATTACTGGGAATGAAAAAATT
GATTATTTTGTAGCAGATCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1090:38078..39698-

>mRNA_H-akashiwo_Contig1090.2.1 ID=mRNA_H-akashiwo_Contig1090.2.1|Name=mRNA_H-akashiwo_Contig1090.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig1090:38078..39698- (Heterosigma akashiwo CCMP452)
GAGAACGAAAAGATCTTTGTTGTAACGGGTTCAACCGACGGGATAGGCCG
TCACACATCCAAAAAACTTGCTGAAACTGGAGCTCGTGTGATCGTCCATG
GCCGTAATACAGCAAGGTGTGAAGAAACTGTGCAATGGATCAAAGATATT
ACTGGGAATGAAAAAATTGATTATTTTGTAGCAGATCTG
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