mRNA_H-akashiwo_Contig109.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig109.13.1
Unique NamemRNA_H-akashiwo_Contig109.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig109.13.1 vs. uniprot
Match: A0A7S3UV58_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV58_HETAK)

HSP 1 Score: 140 bits (353), Expect = 2.100e-40
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:   10 MFDEFEEWTLIMNHYCIVMASNSFWPSDSCTEVGDGSTESGVYSEHDQNTIIGEETTGDHQKQAAEP 210
            MFDEFEEWTLIMNHYCIVMASNSFWPSDSCTEVGDGSTESGVYSEHDQNTIIGEETTGDHQKQAAEP
Sbjct:    1 MFDEFEEWTLIMNHYCIVMASNSFWPSDSCTEVGDGSTESGVYSEHDQNTIIGEETTGDHQKQAAEP 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig109.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UV58_HETAK2.100e-40100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig109contigH-akashiwo_Contig109:1042172..1046383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size212
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.5957544-UTR-H-akashiwo_Contig109:1042171..10421801681387073.5957544-UTR-H-akashiwo_Contig109:1042171..1042180Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig109 1042172..1042180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.6151297-CDS-H-akashiwo_Contig109:1042180..10422161681387073.6151297-CDS-H-akashiwo_Contig109:1042180..1042216Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig109 1042181..1042216 +
1681387073.632317-CDS-H-akashiwo_Contig109:1046218..10463831681387073.632317-CDS-H-akashiwo_Contig109:1046218..1046383Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig109 1046219..1046383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig109.13.1prot_H-akashiwo_Contig109.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig109 1042181..1046383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig109.13.1

>prot_H-akashiwo_Contig109.13.1 ID=prot_H-akashiwo_Contig109.13.1|Name=mRNA_H-akashiwo_Contig109.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=67bp
MFDEFEEWTLIMNHYCIVMASNSFWPSDSCTEVGDGSTESGVYSEHDQNT
IIGEETTGDHQKQAAEP
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mRNA from alignment at H-akashiwo_Contig109:1042172..1046383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig109.13.1 ID=mRNA_H-akashiwo_Contig109.13.1|Name=mRNA_H-akashiwo_Contig109.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4212bp|location=Sequence derived from alignment at H-akashiwo_Contig109:1042172..1046383+ (Heterosigma akashiwo CCMP452)
CAACTAGAGATGTTTGATGAATTTGAAGAGTGGACTCTGATCATGGTAAA
TTCTGCCATATTTGTGTGTGTATATATATATATTATATATATAGAGTTAA
ATTTAAACAAAACAACCTACGCCTTGCATCTATGCAGATGTCCCTGTGGT
AATATACCAAAACCTACACATGAAATCCCAAAACCCAAATCAATGCAGAA
CATCAAATACAGCACACCCCACTATCTCTGGAAGAGAGTGGCAATCCCTC
GCCATCCTCGAACCCCCGAGCTCCTCCACCTCTTCCTGGAGCCCTGGTCC
GCAGATCCACCGCTTTGATGAGCGCGAACTGCAAGCGGACACGCACCCAG
TTGGTGACCGTTGAGAGGGGCTTATGCCACTTTGCCGCGAGCCGAGCAGC
GATGCGCCTGAGGAAGGCCTGCAAGGATTGGTGGGCAATACCCTCCACAG
TCACTATCAAGGGGCAGAAAGTAGCACGGGCGCTCTTCCGCAGCAGCCTT
GTACAACTTCACCTTTTCCCGGCAGAGGTATTGAGGGCATTCTGGTAAGA
GATGTGCTGGGCTGCACGTCCAGGGCTGCCAGCATGTATAATGCGGGTAT
CAAAAAGACAGTCCCTATCAGGTTCCCACACACCCCTCACCACAAAATCC
GCCCTCAAGCCATCGCTACCTCCATCCCTGGCCCGCTCCGACGCCTCCCT
CACCACCGGCTCCCAGCCGCAGTTGTTCAGGCCGCCCGGCTGAACTCCAT
ATATATATATATATATATATATATATATATATATATATATATATTATATA
TCTAGCTCATGCTATAATACATGCTTGTTTTCATTCATGACGTATTGGTG
TTATGTCTGGTGACATGCTCCTATGATGTGTGTATATACTACTACTGTTT
CTAATATTTACTTGCTTGAAGTGCAATGCTATTGATCAACAACACAATTT
GAACAAGTGACATTTTTTTTGTTGTGACATTATACAGACATGGACATTGA
TCATCATATATAGTAATGATCATCAGCCAACAAGGAAAGATTATAATAAT
ATAATAAGGTTACATGGTTATTTCTTTTTTTTATTCAAAAACCCGTTGTA
TTGACTCAGTTCTGCTGTAGAGACTGCTGCTCAGGTCTGGCCAGGGGGTC
GTCGTCAACCCTCTTAAAGTCAATCACAAGTCTTTGATCATTTGGATTGT
CGTAGCCTAAGGTTATCAGGCAGGGGCACTTTGATCATTTGGATTTTTAT
GCCGGAGCACTTTGTTTTTTTTTTACTTATTTCTGATTACTTTGCTTGGC
CAGTATCAGCGCAGCGTTTTGATTGGCATTCTTGCAGTGTTTCCTGAGCC
CAATACCCATGCTGGTCTGGGCCTCATGCTCACACTTGTAGTAACAATGG
ATGTTCTGGGCCTTTCCCTGATGTTCTGCTTGACTGGACATTCTTCTGCA
GATGTCATATATCATATTCTTCTTCTCGCCGATTGTTTTTCTTGTAGCAT
GTCGGGTCCCCTGCTGGAGAGTGAACAGCAGAAGAGCGTGGATTTGGAAC
GCCGGCTGGAGGGAGAGCGGCAGAGGAGTGCGGAGCTGGGGCGTCAGCTG
GAGGGCAAGCAGCAGGCAGGGGCGGAGCTGCAGCGTCAGCTGAGGCTGGA
GCAGCAGGGAAGTGCAGAGCTTGAGCGTCAACTGGGGCTGAAGCAGCAGC
AACTGGGGCTAAATCAGCAGCAACTGGAGCTGAAGCAGCAGCAGGGTGCA
GAGCTGATCAGCTGGGGGCGCAGCAGCGGCTGGTTCTGGTGGACCAGCTG
AACGTGCAACAGCAGCACCAGGAGCAGAGATGGGACTAAGTGCTCAGCGC
CAACTCAGCACTGGCTTTCTTCTTGGAAGTGCTAGCCTTCTGCATACTTG
GGCTTGCACTTGGGAAGGCGTGAAATCCGTGCGTTCGTGACGCTTTCTTC
TTCGCGGTGCTTCGTGTGCCCAAAGGAAAAGTACTATATACCAGATAGGA
CTTTTTGGGTTTTGGTTGTCTCGCGTGGTCAAAAACCACTCATATTATCT
AGTGGAAGAAGGAGAAGGAGAAGTGAAGAAGGGTAGTAGGGTGTAGAAGG
AGAGGGGATCACCACAACTGTGTGTTCTACTTGCATTTTCTACACCCCCC
AATCTTTTAGGGTCTCTTAAGACCCGGTAAGAGTATCTGGAAAGTAGGTA
TCTTAGGAAGTGAAAATGGCAGAGTTGGCCCATGTGAGGAAAACTTTTGC
TGATGACAACAAGTATCCTGACGAGTTTGTGGAGGTAGCTACGGGGGAGA
GGCAAAGGCGGCTGAGGAGGAGACTGCTTCTGGGGATCGTTCCCTGGGGG
CGAGGGTGGTGGTGGAGGAGCTCGGCACTTTGCTGGTTCCTTTCATCAGG
GAGTAGCAGCCTGCTCTCAGGGCCCTTCGTACTACACTTAATTTTAGGCT
TCTTTACGAGAAAACAGTCAACTTGGGCGTAATTCGTCGGCTTCAAGAAG
ACCGGCCGCGGACAGAATGCAGCAGAAGAACGTGGTTTACAAAATCTCTT
GTGAGCAGTGTGAGGTTAGCTATATGTTGGTCAGACCAAAAGATCGCTAG
CTACTAGGATGAAGGAGCATAGTCAGTCGGTGGAAGCAGCCAAGACTTCT
TTATTTGTTGACAGAAAGGTAAAGAGTGACACTGGCTTGCCTGCCCATTT
CTATAGGTTGGATTCTGGCTTTTCACATCGGTTTGACTTTGACAATGCCG
AGGTGCTGTGCAGAGAGGCCCACTGGGGTAAGAAGTTGAAGAAGGGGAGG
CCATTTATAACTATTGCTGTGGTGGACAACACTTACAGCATTCAGAAGGG
CAGAGATTTGAGCCCAATTTAGCTCCCTCTGCTACAGCATTTTTCGTAGA
CAATTCCGGGGACAGGCTACATGGTGTTGATTTAGAGGGAATTTTTCGCG
CGAATTTTTTCTTATTTCGCCCAGGGGAGAGGCTGTGATATGGTTGTGCC
TTGGCGAGTCCTATTTTTCATTTGTTCGGAGATGATATTTCTTCTTAGAT
AGCTTTTTGAGCTACCTAATGATGAAGAGGAAACCTGAATTGTTGTTGTA
ACCTTCAACAGACAGTGATCATTCTCCTTTTTATTCTATTCGCTGATTCA
TCCGCATGAATTCATTGTAAACGTCTGGAGTTCTGGAAGTAAGGCAGAGC
TATGGATAGCTGGAACCTCGACAGACAGCCCACGCCGACGAACAGTTCAG
GGCTGAAGAAGAGGTAGCTAAGGTCACTCCTATACCGAAGATACTACTCT
GATGAGGTTGTTAGACAGACCTCCCCTAGCTATGATGTGTTCAAAGACCG
TGGAGCGTATCACCGTGTAATGAAGACTGGCATCGTGCATGAATAAATGT
AGTGATTTGGAGGAGCCTAGAATTAGTGCCAGATCTTTTCCGTGCCGTCA
AGAGGTTAGTGTCGAATTAAAATGAAAAAATGAAAACAAGATCTATCTGA
TTGATTTTTCATTCTACTTTGACTTTAATGTCTTTGACATGGAGCAGACC
AGCGCTGGTCTTAGGCCTCCCACATCACCAACCACTGTAGACAGATGTAT
TCATTTTTTATTGATTAGACCAGCGCTGGTCTGCTCCATGTCAAAGACAT
TAAAGTCAAAGTAGCATGAAAAAGCAATCTGTAAACAACCCCTGTCTTTT
TCGAGACTGCCAAAAAAATCAAGGGTCTATCTGGTCGTGAATAGCTATCA
TAATACATGATGGTCACATGATATTAAAACATGTACACTAGTATCATAGT
ATGTGGGTGTGCGAGGACAGTTCAATCAAAACAAAACGTATTGAGATGGG
ATGATGAAGTTGACTTGTGGTGTTCTTTTTACAGCAATACAACAAGCGTG
TTTGGGTATCATGTTTGACATCTACATATTGTATGTAAATGCACTTTGTC
GTACATATTTGAATACATACCCAGCAACATGTAAGTATATATGACATTCT
TGCTGCTTTCCTTCCTCTCTTGTGCTACAACAACTCAACTCTGACAGAAT
CACTATTGTATTGTGATGGCTTCAAATTCTTTTTGGCCAAGTGATAGCTG
CACTGAAGTGGGAGATGGCAGCACTGAAAGTGGCGTTTACTCTGAGCATG
ATCAAAATACCATCATTGGTGAAGAGACTACTGGTGATCATCAAAAACAG
GCAGCGGAGCCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig109:1042172..1046383+

>mRNA_H-akashiwo_Contig109.13.1 ID=mRNA_H-akashiwo_Contig109.13.1|Name=mRNA_H-akashiwo_Contig109.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=201bp|location=Sequence derived from alignment at H-akashiwo_Contig109:1042172..1046383+ (Heterosigma akashiwo CCMP452)
ATGTTTGATGAATTTGAAGAGTGGACTCTGATCATGAATCACTATTGTAT
TGTGATGGCTTCAAATTCTTTTTGGCCAAGTGATAGCTGCACTGAAGTGG
GAGATGGCAGCACTGAAAGTGGCGTTTACTCTGAGCATGATCAAAATACC
ATCATTGGTGAAGAGACTACTGGTGATCATCAAAAACAGGCAGCGGAGCC
A
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