mRNA_H-akashiwo_Contig1089.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1089.5.1
Unique NamemRNA_H-akashiwo_Contig1089.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1089.5.1 vs. uniprot
Match: A0A6V1N1J2_HETAK (Fucosyltransferase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N1J2_HETAK)

HSP 1 Score: 169 bits (428), Expect = 1.630e-47
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 LYQDIYKLYGPDYKPQWFKERKPYSSHEGRPWKIYRVYPADSNQRQALYGNAWFRDSQQLVEYLSTNQCPQLEVVFV 231
            LYQDIYKLYGPDYKPQWFKERKPYSSHEGRPWKIYRVYPADSNQRQALYGNAWFRDSQQLVEYLSTNQCPQLEVVFV
Sbjct:  494 LYQDIYKLYGPDYKPQWFKERKPYSSHEGRPWKIYRVYPADSNQRQALYGNAWFRDSQQLVEYLSTNQCPQLEVVFV 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1089.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1N1J2_HETAK1.630e-47100.00Fucosyltransferase n=2 Tax=Heterosigma akashiwo Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1089contigH-akashiwo_Contig1089:218241..218597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4558.Sb07g022980.1
PFAMsGlyco_transf_10
Model size357
Max annot lvl35493|Streptophyta
KEGG koko:K00753
KEGG ReactionR06015,R09318,R11318
KEGG Pathwayko00513,ko01100,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005996,GO:0006004,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0008417,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0018392,GO:0019317,GO:0019318,GO:0019320,GO:0019538,GO:0031410,GO:0031982,GO:0031984,GO:0034645,GO:0036065,GO:0036211,GO:0042354,GO:0042355,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046920,GO:0070085,GO:0071704,GO:0097708,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons1
Evalue1.88e-08
EggNOG OGsKOG2619@1|root,KOG2619@2759|Eukaryota,37QW4@33090|Viridiplantae,3GBS0@35493|Streptophyta,3KQKC@4447|Liliopsida,3I95Z@38820|Poales
EC2.4.1.214
DescriptionGlycosyltransferase family 10 (fucosyltransferase) C-term
Cds size234
COG categoryG
CAZyGT10
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.3964555-CDS-H-akashiwo_Contig1089:218240..2184741681387073.3964555-CDS-H-akashiwo_Contig1089:218240..218474Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1089 218241..218474 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.406473-UTR-H-akashiwo_Contig1089:218474..2185971681387073.406473-UTR-H-akashiwo_Contig1089:218474..218597Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1089 218475..218597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1089.5.1prot_H-akashiwo_Contig1089.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1089 218241..218474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1089.5.1

>prot_H-akashiwo_Contig1089.5.1 ID=prot_H-akashiwo_Contig1089.5.1|Name=mRNA_H-akashiwo_Contig1089.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=78bp
LYQDIYKLYGPDYKPQWFKERKPYSSHEGRPWKIYRVYPADSNQRQALYG
NAWFRDSQQLVEYLSTNQCPQLEVVFV*
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mRNA from alignment at H-akashiwo_Contig1089:218241..218597+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1089.5.1 ID=mRNA_H-akashiwo_Contig1089.5.1|Name=mRNA_H-akashiwo_Contig1089.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=357bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:218241..218597+ (Heterosigma akashiwo CCMP452)
CTTTACCAGGATATATACAAACTGTATGGGCCAGACTACAAGCCTCAGTG
GTTCAAAGAGCGAAAGCCCTACTCCTCCCATGAAGGCAGGCCATGGAAAA
TCTACAGGGTTTACCCCGCTGACTCAAACCAACGCCAAGCTTTGTATGGA
AATGCCTGGTTCAGAGATTCACAACAACTGGTAGAATACCTCTCTACCAA
CCAGTGCCCCCAGCTAGAAGTTGTGTTTGTTTGATTGGGGGAGACTCCTA
AAATGAGCTGCAGTATAATGACGATGGTGACAATGTCAGTAGATTTTTCA
TAATCAATGACAGGTTGATAAGGACACTTTTTATAATTCAACAGGACTTG
ATAAAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1089:218241..218597+

>mRNA_H-akashiwo_Contig1089.5.1 ID=mRNA_H-akashiwo_Contig1089.5.1|Name=mRNA_H-akashiwo_Contig1089.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=234bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:218241..218597+ (Heterosigma akashiwo CCMP452)
CTTTACCAGGATATATACAAACTGTATGGGCCAGACTACAAGCCTCAGTG
GTTCAAAGAGCGAAAGCCCTACTCCTCCCATGAAGGCAGGCCATGGAAAA
TCTACAGGGTTTACCCCGCTGACTCAAACCAACGCCAAGCTTTGTATGGA
AATGCCTGGTTCAGAGATTCACAACAACTGGTAGAATACCTCTCTACCAA
CCAGTGCCCCCAGCTAGAAGTTGTGTTTGTTTGA
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