mRNA_H-akashiwo_Contig1089.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1089.4.1
Unique NamemRNA_H-akashiwo_Contig1089.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A6V1N1J2_HETAK (Fucosyltransferase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N1J2_HETAK)

HSP 1 Score: 185 bits (470), Expect = 4.330e-54
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1
Query:    1 QYLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARASRKCRCQHEESSVHHIYIRERGQLYFKDVFVTVDDS 276
            +YLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARASRKCRCQHEESSVHHIYIRERGQLYFKDVFVTVDDS
Sbjct:  391 KYLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARASRKCRCQHEESSVHHIYIRERGQLYFKDVFVTVDDS 482          
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A4D8YZW2_SALSN (Fucosyltransferase n=5 Tax=Salvia TaxID=21880 RepID=A0A4D8YZW2_SALSN)

HSP 1 Score: 90.9 bits (224), Expect = 2.300e-19
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 QYLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARA---SRKCRCQHEESSVHHIYIRERGQLYFKDVFVTVD 270
            +YL  N +A+ E L WK  GP + F+ALVDM++ HSACRLC+ +ATK + KEE R    +R C+C     + +HIYIRERG+ + + +F+  D
Sbjct:  331 KYLAGNESAFNESLRWKYDGPSDSFKALVDMAAVHSACRLCIFLATKIQEKEENRPEFQNRPCKCTRGSRTTYHIYIRERGRFHTESIFLRSD 423          
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A3Q7ETX9_SOLLC (Fucosyltransferase n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7ETX9_SOLLC)

HSP 1 Score: 87.4 bits (215), Expect = 4.260e-18
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 QYLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARAS---RKCRCQHEESSVHHIYIRERGQLYFKDVFV 261
            +YL  N  AY E L WK  GP + F+ALVDM++ HS+CRLC+L+AT+ R KEE       R C+C     +V+H+Y+RERG+     +F+
Sbjct:  591 KYLAENPIAYNESLRWKFEGPSDAFKALVDMAAVHSSCRLCILLATRIREKEERSPKFMKRPCKCTRGTETVYHVYVRERGRFEMDSIFL 680          
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A2I0AVD9_9ASPA (Fucosyltransferase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AVD9_9ASPA)

HSP 1 Score: 86.3 bits (212), Expect = 9.880e-18
Identity = 42/92 (45.65%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 QYLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARA---SRKCRCQHEESSV-HHIYIRERGQLYFKDVFVT 264
            +YL AN  A+ + L+WK  GP + F ALVDM++ HS+CRLC+ +ATK ++KEEA A   +R C+C+ +  S+ +H+Y+RERG+   + VF++
Sbjct:  320 KYLAANPAAFNKTLSWKFDGPSDSFNALVDMAAVHSSCRLCIYLATKIQDKEEASARFKNRPCKCKSKAGSLLYHLYVRERGRFKTESVFLS 411          
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A8J9RAZ8_9CHLO (Fucosyltransferase-like protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RAZ8_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 1.070e-17
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    4 YLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARASRK--CRCQH--EESSVHHIYIRERGQLYFKDVFV 261
            YL+ NATAY EMLAWK  GP +KF AL+D+S  HS+C LC+ +AT+ R  EEA   R+  C C+     S VHH+ +RERG+   +DVF+
Sbjct:  463 YLIQNATAYNEMLAWKATGPQDKFLALLDLSVVHSSCSLCIHLATRIRAAEEAVQPRQLPCSCRRGPRGSVVHHVLVRERGRFDSRDVFL 552          
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A6P5Z031_DURZI (Fucosyltransferase n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5Z031_DURZI)

HSP 1 Score: 83.6 bits (205), Expect = 9.080e-17
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 QYLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARAS---RKCRCQHEESSVHHIYIRERGQLYFKDVFV 261
            +YL  N  AY + L WK  GP + F+ALVDM++ HS+CRLC+ +AT  R KEE  +    R C+C     +V+H+Y+RERG+     +F+
Sbjct:  341 KYLSENPDAYNQSLRWKYEGPSDSFKALVDMATVHSSCRLCIHLATVIREKEEKSSDFKKRPCKCTRGSETVYHLYVRERGRFEMDSIFL 430          
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A8J5GKR7_ZINOF (Fucosyltransferase n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GKR7_ZINOF)

HSP 1 Score: 82.8 bits (203), Expect = 1.600e-16
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    7 LMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARAS---RKCRCQHEESSVHHIYIRERGQLYFKDVFV 261
            L ++  AY   L WK  GP + F+ALVDM+S HS+CRLC+ +ATK R KEE  +S   R C C  + ++V+H+++RERG+   + +++
Sbjct:  357 LASDRVAYNHTLRWKYEGPSDSFKALVDMASVHSSCRLCIHLATKIREKEETSSSFQNRPCHCTSKAATVYHLFVRERGRFKMESIYM 444          
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A7J7DXU6_TRIWF (Fucosyltransferase n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DXU6_TRIWF)

HSP 1 Score: 81.3 bits (199), Expect = 5.920e-16
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 QYLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARAS---RKCRCQHEESSVHHIYIRERGQLYFKDVFVTVDD 273
            +YL     AY + L WK  GP + F+ALVDM++ HS+CRLC+ +AT  R +EE       R CRC     +V+H+Y+RERG+   + +F+   D
Sbjct:  339 RYLAETPDAYNQSLRWKYDGPSDSFKALVDMATVHSSCRLCIHLATMIREEEEKSPKFKKRPCRCTRGPETVYHLYVRERGRFNMESIFLRSGD 432          
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A8J5LCV7_ZINOF (Fucosyltransferase n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LCV7_ZINOF)

HSP 1 Score: 79.0 bits (193), Expect = 3.580e-15
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    7 LMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARAS---RKCRCQHEESSVHHIYIRERGQLYFKDVFV 261
            L ++  AY   L WK  GP + F+ALVDM++ HS+CRLC+ +ATK   KEE  +S   R C C  +  +V+H+++RERG+   + +++
Sbjct:  335 LASDHVAYNHTLRWKYEGPSDSFKALVDMATVHSSCRLCIHLATKIHEKEETSSSFQNRPCHCTSKAETVYHLFVRERGRFKMESIYM 422          
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Match: A0A7J7HRP7_CAMSI (Fucosyltransferase n=1 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7HRP7_CAMSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.050e-14
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    1 QYLMANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEEARAS---RKCRCQHEESSVHHIYIRERGQLYFKDVFV 261
            +YL  N  AY + + WK  GP   F+AL+D+++ HS+CRLC+ +AT  R KE+       R  +C     +V+H+Y+RERG+   + + +
Sbjct:   75 KYLAKNPDAYNQSVRWKFEGPSNSFKALIDLAAVHSSCRLCIYLATMNREKEKQGPGFQKRPYKCTRGLETVYHVYVRERGRFMMESILL 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1089.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6V1N1J2_HETAK4.330e-5498.91Fucosyltransferase n=2 Tax=Heterosigma akashiwo Ta... [more]
A0A4D8YZW2_SALSN2.300e-1946.24Fucosyltransferase n=5 Tax=Salvia TaxID=21880 RepI... [more]
A0A3Q7ETX9_SOLLC4.260e-1845.56Fucosyltransferase n=1 Tax=Solanum lycopersicum Ta... [more]
A0A2I0AVD9_9ASPA9.880e-1845.65Fucosyltransferase n=1 Tax=Apostasia shenzhenica T... [more]
A0A8J9RAZ8_9CHLO1.070e-1751.11Fucosyltransferase-like protein n=1 Tax=Coccomyxa ... [more]
A0A6P5Z031_DURZI9.080e-1743.33Fucosyltransferase n=1 Tax=Durio zibethinus TaxID=... [more]
A0A8J5GKR7_ZINOF1.600e-1643.18Fucosyltransferase n=1 Tax=Zingiber officinale Tax... [more]
A0A7J7DXU6_TRIWF5.920e-1641.49Fucosyltransferase n=1 Tax=Tripterygium wilfordii ... [more]
A0A8J5LCV7_ZINOF3.580e-1540.91Fucosyltransferase n=3 Tax=Zingiber officinale Tax... [more]
A0A7J7HRP7_CAMSI3.050e-1436.67Fucosyltransferase n=1 Tax=Camellia sinensis TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1089contigH-akashiwo_Contig1089:217357..217976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S31_233V6.3
PFAMsGlyco_transf_10
Model size279
Max annot lvl35493|Streptophyta
KEGG koko:K00753
KEGG ReactionR06015,R09318,R11318
KEGG Pathwayko00513,ko01100,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005996,GO:0006004,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0008417,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0018392,GO:0019317,GO:0019318,GO:0019320,GO:0019538,GO:0031410,GO:0031982,GO:0031984,GO:0034645,GO:0036065,GO:0036211,GO:0042354,GO:0042355,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046920,GO:0070085,GO:0071704,GO:0097708,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons2
Evalue5.89e-19
EggNOG OGsKOG2619@1|root,KOG2619@2759|Eukaryota,37QW4@33090|Viridiplantae,3GBS0@35493|Streptophyta
EC2.4.1.214
Descriptionglycoprotein 3-alpha-L-fucosyltransferase
Cds size270
COG categoryG
CAZyGT10
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.3313572-UTR-H-akashiwo_Contig1089:217356..2173651681387073.3313572-UTR-H-akashiwo_Contig1089:217356..217365Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1089 217357..217365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.3561761-CDS-H-akashiwo_Contig1089:217365..2175021681387073.3561761-CDS-H-akashiwo_Contig1089:217365..217502Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1089 217366..217502 +
1681387073.3684587-CDS-H-akashiwo_Contig1089:217843..2179761681387073.3684587-CDS-H-akashiwo_Contig1089:217843..217976Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1089 217844..217976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1089.4.1prot_H-akashiwo_Contig1089.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1089 217366..217976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1089.4.1

>prot_H-akashiwo_Contig1089.4.1 ID=prot_H-akashiwo_Contig1089.4.1|Name=mRNA_H-akashiwo_Contig1089.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=90bp
MANATAYEEMLAWKRAGPGEKFRALVDMSSTHSACRLCLLVATKQRNKEE
ARASRKCRCQHEESSVHHIYIRERGQLYFKDVFVTVDDS*
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mRNA from alignment at H-akashiwo_Contig1089:217357..217976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1089.4.1 ID=mRNA_H-akashiwo_Contig1089.4.1|Name=mRNA_H-akashiwo_Contig1089.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=620bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:217357..217976+ (Heterosigma akashiwo CCMP452)
CAGTACCTCATGGCCAACGCCACGGCCTACGAGGAGATGCTGGCCTGGAA GCGGGCGGGGCCGGGTGAGAAGTTCCGCGCCCTGGTGGACATGAGCTCCA CGCACTCTGCCTGCCGGCTCTGCCTCCTCGTGGCCACCAAGCAGCGGTGG GGCAGACCTCCCTCCGGGGGGGGGGGGGGTTCCCTCTGAGCAGCGGCGTG TGCAACTCTACCAGCTCATAGTAGGGCACCTTAATTAAGTATGTATTAAA TTATAATTACATCAAACAGTATTTACTGCTACTGTTCGCAAAATAAACTG TCAGTAGTAGTTTGATACATTTTGCAACCATGGCATGGAATCTGGAAACA ATTATATCTGTCATATCCCTGGGTTCATTTTTAATATATCCTAAAAATGG ATCATGTCTGCTTGACAAAGAGGCCTCTCGTGCCTGCGTTAATACCGCCA TCAACCCATGCACACACCTATCATCCCCCCAATGCAGAAACAAGGAAGAG GCTAGGGCTTCGCGCAAGTGCCGGTGTCAACACGAAGAGTCTAGTGTACA TCACATATACATTCGTGAGCGAGGGCAGTTATACTTCAAAGATGTTTTTG TTACAGTCGATGACTCGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1089:217357..217976+

>mRNA_H-akashiwo_Contig1089.4.1 ID=mRNA_H-akashiwo_Contig1089.4.1|Name=mRNA_H-akashiwo_Contig1089.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=270bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:217357..217976+ (Heterosigma akashiwo CCMP452)
ATGGCCAACGCCACGGCCTACGAGGAGATGCTGGCCTGGAAGCGGGCGGG
GCCGGGTGAGAAGTTCCGCGCCCTGGTGGACATGAGCTCCACGCACTCTG
CCTGCCGGCTCTGCCTCCTCGTGGCCACCAAGCAGCGAAACAAGGAAGAG
GCTAGGGCTTCGCGCAAGTGCCGGTGTCAACACGAAGAGTCTAGTGTACA
TCACATATACATTCGTGAGCGAGGGCAGTTATACTTCAAAGATGTTTTTG
TTACAGTCGATGACTCGTGA
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