mRNA_H-akashiwo_Contig1089.2.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A7S4DD18_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD18_HETAK) HSP 1 Score: 343 bits (881), Expect = 4.900e-114 Identity = 172/242 (71.07%), Postives = 205/242 (84.71%), Query Frame = 1
Query: 283 DPAGPFLFCLGLKACLQSIESHGTHLPPSAVVLSLMDDITILLDSDDAIEAFRRCRAELKAKFNLDLNVIKCKLLPFGDSANGPQFPDASLDEEGVLRLEGLEVARNGAKLLGCPMGTDAFKQAFFHDKLAEIQSLLDKIGKLDTAQIQLLLLRFCARPRVIYWNRLMDPRTPGKQDFLRQHNAQIVRAVQSVVHVQPGEFRAHTTTQLSLPANLG---GAGLSNQERLSGIAFGSSISMSS 999
DPAGPFLFCLGLKACL +IE+ LP SA++LSLMDDIT+LLDS+ A+EAF+ C+ ELK+KFNL+LNV+K K++PFGD+ GPQFP+A+LDE V RLEGLE+ARNGAKLLGCP+GTDAFKQ+FFH KL EIQ LL KIG L +QIQ+LLLRFCA PRVIYWNRL+DPRTPGK++FL QH+ QIVRA+QS + +QP +F+AHT TQLSLPANLG GA LS+Q RLS IAF SSI+M S
Sbjct: 1 DPAGPFLFCLGLKACLDAIEAQ---LPASAIILSLMDDITVLLDSESALEAFKICQRELKSKFNLELNVMKSKVVPFGDTPAGPQFPEATLDEMRVCRLEGLEIARNGAKLLGCPIGTDAFKQSFFHAKLEEIQGLLHKIGLLHNSQIQILLLRFCAHPRVIYWNRLIDPRTPGKREFLLQHDGQIVRALQSALQIQPSDFQAHTATQLSLPANLGDLGGASLSSQARLSEIAFASSIAMCS 239
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A7S3Y6Q2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6Q2_HETAK) HSP 1 Score: 295 bits (756), Expect = 3.340e-96 Identity = 147/207 (71.01%), Postives = 176/207 (85.02%), Query Frame = 1
Query: 388 MDDITILLDSDDAIEAFRRCRAELKAKFNLDLNVIKCKLLPFGDSANGPQFPDASLDEEGVLRLEGLEVARNGAKLLGCPMGTDAFKQAFFHDKLAEIQSLLDKIGKLDTAQIQLLLLRFCARPRVIYWNRLMDPRTPGKQDFLRQHNAQIVRAVQSVVHVQPGEFRAHTTTQLSLPANLG---GAGLSNQERLSGIAFGSSISMSS 999
MDDIT+LLDS+ A+EAF+ C+ ELK+KFNL+LNV+K K++PFGD+ GPQFP+A+LDE V RLEGLE+ARNGAKLLGCP+GTDAFKQ+FFH KL EIQ LL KIG L +QIQ+LLLRFCA PRVIYWNRL+DPRTPGK++FL QH+ QIVRA+QS + +QP +F+AHT TQLSLPANLG GA LS+Q RLS IAF SSI+M S
Sbjct: 1 MDDITVLLDSESALEAFKICQRELKSKFNLELNVMKSKVVPFGDTPAGPQFPEATLDEMRVCRLEGLEIARNGAKLLGCPIGTDAFKQSFFHAKLEEIQGLLHKIGLLHNSQIQILLLRFCAHPRVIYWNRLIDPRTPGKREFLLQHDGQIVRALQSALQIQPSDFQAHTATQLSLPANLGDLGGASLSSQARLSEIAFASSIAMCS 207
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A7S3Y6Y4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6Y4_HETAK) HSP 1 Score: 254 bits (650), Expect = 2.380e-81 Identity = 136/158 (86.08%), Postives = 142/158 (89.87%), Query Frame = 1
Query: 529 GPQFPDASLDEEGVLRLEGLEVARNGAKLLGCPMGTDAFKQAFFH-DKLAEIQSLLDKIGKLDTAQIQLLLLRFCARPRVIYWNRLMDPRTPGKQDFLRQHNAQIVRAVQSVVHVQPGEFRAHTTTQLSLPANLGGAGLSNQERLSGIAFGSSISMSS 999
GPQFPDASLDEE VL L+GLEVARNGAKLLGC MGTDAFKQAFF +KLAEIQ +IGKLDTAQIQLLLLRF A PRVIYWNRLMDPRTPGKQDFLRQH+AQIVRAVQSVVHVQPGEF HTTTQLSLPANLGGAGLSNQER SGIA SS++MSS
Sbjct: 1 GPQFPDASLDEERVLMLKGLEVARNGAKLLGCLMGTDAFKQAFFQKNKLAEIQG---RIGKLDTAQIQLLLLRFFAYPRVIYWNRLMDPRTPGKQDFLRQHDAQIVRAVQSVVHVQPGEFLPHTTTQLSLPANLGGAGLSNQERFSGIADASSVAMSS 155
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A7S3Y6Z6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6Z6_HETAK) HSP 1 Score: 209 bits (532), Expect = 3.880e-64 Identity = 121/148 (81.76%), Postives = 123/148 (83.11%), Query Frame = 2
Query: 2 SSPSARGPAARSWSIASVLSLTRWKKEPAVPSSWTASTLSTRVT-GGLSWTLSTRLTPSSSPSFSSSTADAAPSSIGGPMVPPTMSTVRREPCRATQPALSSFASVLRRVCSQSSPMGPIFPPPLLCSP*WTTLPSSWTLMTPSRPSD 442
SSPSARGPAARSWSIASV TRWKK PAVPS WTASTLSTRVT GGLSWTLSTRL+PSSSPSF SSTADAA S IGGPMV P +ST RREPCRA QP LSS ASV RR CS SSP FPPPL CSP WTTL SSWTLMTPSRPSD
Sbjct: 16 SSPSARGPAARSWSIASVPFSTRWKKVPAVPSFWTASTLSTRVTTGGLSWTLSTRLSPSSSPSFFSSTADAALSCIGGPMVLPALSTARREPCRAIQPVLSSSASVSRRACSLSSPS---FPPPLFCSPSWTTLSSSWTLMTPSRPSD 160
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A0G4GSB3_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GSB3_VITBC) HSP 1 Score: 160 bits (405), Expect = 2.210e-42 Identity = 115/333 (34.53%), Postives = 162/333 (48.65%), Query Frame = 1
Query: 1 QFAVGTRAGSEKLVHCISAFLNSVEEGTCSALL--LDCVNAFNACDRRVIMDAVHQAYPELEPFFLQFYGGRCPILYRGADGTPHYVYSEEGTMQGDPAGPFLFCLGLKACLQSIESHGTHLPPSAVVLSLMDDITILLDSDDAIEAFRRCRAELKAKFNLDLNVIKCKLLPFGDSANGPQFPDASLDEEGVLRLEGLEVARNGAKLLGCPMGTDAFKQAFFHDKLAEIQSLLDKIGKLDTAQIQL--LLLRFCARPRVIYWNRLMDPRTPGKQDFLRQHNAQIVRAVQSVVHVQPGEFRAHTTTQLSLPANLGGAGLSNQERLSGIAFGSSI 987
QFAVGT AG EK+ ++ + + + +L LDC NAFN+ DR+ I+DA+ +P FYG + YR DG + S+EGT QGD AGPFLFCLGL L ++ P A V + MDDI LD R L K K +L +A P++ S D + G++ + +G +LGCP+G ++F Q Q LLD I +Q LLLR+CA PR+ YW RL+ P + +H+A I+RA + + PG+F + Q+ LP LGG GL + ++ AF SI
Sbjct: 15 QFAVGTSAGGEKIFRACQTYMETRRDDSDRRVLVTLDCKNAFNSIDRQAILDALGTKWP--------FYGTPAELWYRMEDGRTETILSQEGTQQGDAAGPFLFCLGLHPALVKLQEEF----PDAFVSAFMDDIDGGLDETRVTGYVDRAEQLLAEK--------KLRLRRDKSAAWSPRWQQDS-DIPADIAASGVKCSTDGITVLGCPLGGNSFIQHSLEKITNGHQPLLDAIVTFAQKGLQGSGLLLRYCASPRLNYWLRLLPPESDVSLAAAERHDAAIIRAFRRMFRF-PGDFPDSVSAQVQLPIRLGGFGLVSASTIARAAFLGSI 325
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A0G4GD26_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GD26_VITBC) HSP 1 Score: 163 bits (412), Expect = 4.920e-41 Identity = 116/333 (34.83%), Postives = 160/333 (48.05%), Query Frame = 1
Query: 1 QFAVGTRAGSEKLVHCISAFLNSVEEGTCSALL--LDCVNAFNACDRRVIMDAVHQAYPELEPFFLQFYGGRCPILYRGADGTPHYVYSEEGTMQGDPAGPFLFCLGLKACLQSIESHGTHLPPSAVVLSLMDDITILLDSDDAIEAFRRCRAELKAKFNLDLNVIKCKLLPFGDSANGPQFPDASLDEEGVLRLEGLEVARNGAKLLGCPMGTDAFKQAFFHDKLAEIQSLLDKIGKLDTAQIQL--LLLRFCARPRVIYWNRLMDPRTPGKQDFLRQHNAQIVRAVQSVVHVQPGEFRAHTTTQLSLPANLGGAGLSNQERLSGIAFGSSI 987
QFAVGT AG EK ++ + + + +L LDC NAFN+ DR+ I+D + +P FF QFYG + YR DG + S+EGT QGD AGPFLFCLGL L ++ P V + MDDI LD R L K K +L +A P++ S D + G++ + G +LGCP+G D F Q + Q LLD I +Q LLLR+CA PR+ YW RL+ + +H+A I+ A + + PG+F A +TQ+ LP L G GL + ++ AF SI
Sbjct: 533 QFAVGTLAGGEKTFRACQTYMETRRDDSGRRVLVTLDCKNAFNSIDRQSILDELGIKWPSFVDFFWQFYGTPAELWYRMKDGRTETILSQEGTQQGDAAGPFLFCLGLHPALVKLQEEF----PDDFVSAFMDDIDGELDETRVTGYVDRAEQLLAEK--------KLRLRRDKSAAWSPRWQQDS-DIPADIAASGVKCSTEGITVLGCPLGGDYFIQHSLEKITSSHQPLLDAIVTFAQKGLQGSGLLLRYCASPRLNYWLRLLPSESDVSLAAAERHDAAIITAFRRMFRF-PGDFPASVSTQVQLPIRLEGFGLVSASTIARAAFLCSI 851
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A0G4G029_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G029_VITBC) HSP 1 Score: 157 bits (397), Expect = 4.630e-39 Identity = 111/333 (33.33%), Postives = 158/333 (47.45%), Query Frame = 1
Query: 1 QFAVGTRAGSEKLVHCISAFLNSVEEGTCSALL--LDCVNAFNACDRRVIMDAVHQAYPELEPFFLQFYGGRCPILYRGADGTPHYVYSEEGTMQGDPAGPFLFCLGLKACLQSIESHGTHLPPSAVVLSLMDDITILLDSDDAIEAFRRCRAELKAKFNLDLNVIKCKLLPFGDSANGPQFPDASLDEEGVLRLEGLEVARNGAKLLGCPMGTDAFKQAFFHDKLAEIQSLLDKIGKLDTAQIQL--LLLRFCARPRVIYWNRLMDPRTPGKQDFLRQHNAQIVRAVQSVVHVQPGEFRAHTTTQLSLPANLGGAGLSNQERLSGIAFGSSI 987
QFAVGT AG EK+ ++ + + + +L LDC NAFN+ D + I+D + +P L FF QFYG + YR DG + ++EGT QGD AGPFLFCLGL L ++ P + + MDDI D ++ R R E C + P Q D S D + G++ + G +LGCP+G +F Q + Q LLD I +Q LLLR+CA PR+ YW RL+ + +H+A I+ A + + PG+F + Q+ LP LGG GL + ++ AF SI
Sbjct: 381 QFAVGTSAGGEKIFQACQTYMETRHDDSDKRVLVTLDCKNAFNSSDGQAILDELGTKWPSLVDFFWQFYGSPAELWYRMEDGRIETILTQEGTQQGDAAGPFLFCLGLHPALVKLQGEF----PDDFISAFMDDI------DGGLDETRVTRQE-------------CCMKP-----RWQQDSDISAD----IAASGVKCSTEGITVLGCPLGGKSFIQHSLEKITSSHQPLLDAIVTFAQKGLQGSGLLLRYCASPRLNYWLRLLPRESDVSLAAAERHDAAIITAFRRMFRF-PGDFPDSVSAQVQLPIRLGGFGLVSASTIARAAFLGSI 680
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A0G4G4F1_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G4F1_VITBC) HSP 1 Score: 154 bits (390), Expect = 4.630e-38 Identity = 107/320 (33.44%), Postives = 156/320 (48.75%), Query Frame = 1
Query: 1 QFAVGTRAGSEKLVHCISAFLNSVEEGTCSALL-LDCVNAFNACDRRVIMDAVHQAYPELEPFFLQFYGGRCPILYRGADGTPHYVYSEEGTMQGDPAGPFLFCLGLKACLQSIESHGTHLPPSAVVLSLMDDITILLDSDDAIEAFRRCRAELKAKFNLDLNVIKCKLLPFGDSANGPQFPDASLDEEGVL---RLEGLEVARNGAKLLGCPMGTDAFKQAFFHDKLAEIQSLLDKIGKLDTAQIQ--LLLLRFCARPRVIYWNRLMDPRTPGKQDFLRQHNAQIVRAVQSVVHVQPGEFRAHTTTQLSLPANLGGAGL 942
Q AVGT AG+EKL F+ S EG L LDC NAFN DR+ I++ + +PEL F QFYG + YR ADG + S++GT QGDPAGPFLFCL L+ L++I++ P A++ + MDDIT D +A + EL+ I KL A GP + D+ + +L EGL + G +LG +GTD + L + L++++ Q Q LL R CA PR+ YW RL+ R + + +++ A ++ + + Q++LP GG G+
Sbjct: 629 QCAVGTPAGNEKLFKAAETFIQSRREGEKRLLTTLDCTNAFNEVDRQAIVNELASQFPELFHFLWQFYGEPAELWYRLADGRVRTILSQQGTQQGDPAGPFLFCLALQPVLKAIQASY----PRALIQAFMDDITPGADESEADGVVNKAEEELQT--------ISLKLARKKSKAYGPHWTDSEPPPDDLLPGFEREGL--SGEGIDILGGAIGTDGYVANKLQSVLDSHRPLIERLNAFAHEQRQDSSLLFRSCAVPRLYYWLRLLSQRPLTTEVTALMRDEEVMNAAIAIHGLGEEDSTEPQRRQMALPVREGGMGI 934
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A7S3XTR8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTR8_HETAK) HSP 1 Score: 137 bits (344), Expect = 2.300e-36 Identity = 71/80 (88.75%), Postives = 73/80 (91.25%), Query Frame = 2
Query: 758 PV*STGTGSWTPALLASRTSCASITPRLSGPFSRWSTSNPVSSVPTPPPNSACRPTLEALASPTKSASRGLPLVAQFPCP 997
P STGTGSWTP LLASRTSCAS+ PRL GPFSRWSTSNP+SSVPTP PNSACRPTLEALASPTKSAS GLPLVAQFPCP
Sbjct: 1 PASSTGTGSWTPVLLASRTSCASMKPRLCGPFSRWSTSNPMSSVPTPQPNSACRPTLEALASPTKSASWGLPLVAQFPCP 80
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Match: A0A7S4D6N0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6N0_HETAK) HSP 1 Score: 134 bits (336), Expect = 2.530e-35 Identity = 69/79 (87.34%), Postives = 71/79 (89.87%), Query Frame = -1
Query: 757 HGN*ATKGNPREALLVGEASASKVGRQAELGGGVGTELTGLDVDHRLNGPDNLGVMLAQEVLLARSAGVHEPVPVDHTG 993
HGN A+ GNPREALLVGEASASKVGRQAEL GGVG ELTGL+VDHRLNGPDNLG MLAQEVLLARS GVHEPVPVD G
Sbjct: 43 HGNRASIGNPREALLVGEASASKVGRQAELVGGVGEELTGLNVDHRLNGPDNLGFMLAQEVLLARSTGVHEPVPVDDAG 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1089.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1089.2.1 >prot_H-akashiwo_Contig1089.2.1 ID=prot_H-akashiwo_Contig1089.2.1|Name=mRNA_H-akashiwo_Contig1089.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=333bp QFAVGTRAGSEKLVHCISAFLNSVEEGTCSALLLDCVNAFNACDRRVIMDback to top mRNA from alignment at H-akashiwo_Contig1089:188601..189599- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1089.2.1 ID=mRNA_H-akashiwo_Contig1089.2.1|Name=mRNA_H-akashiwo_Contig1089.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=999bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:188601..189599- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1089:188601..189599- >mRNA_H-akashiwo_Contig1089.2.1 ID=mRNA_H-akashiwo_Contig1089.2.1|Name=mRNA_H-akashiwo_Contig1089.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=999bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:188601..189599- (Heterosigma akashiwo CCMP452)back to top |