mRNA_H-akashiwo_Contig1089.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1089.12.1
Unique NamemRNA_H-akashiwo_Contig1089.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1089.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1089contigH-akashiwo_Contig1089:380193..381355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size752
Hectar predicted targeting categorysignal peptide
Exons4
Cds size381
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1089.12.1prot_H-akashiwo_Contig1089.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1089 380267..381058 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.1737432-UTR-H-akashiwo_Contig1089:380192..3802661681387073.1737432-UTR-H-akashiwo_Contig1089:380192..380266Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1089 380193..380266 +
1681387073.224112-UTR-H-akashiwo_Contig1089:381058..3813551681387073.224112-UTR-H-akashiwo_Contig1089:381058..381355Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1089 381059..381355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.186437-CDS-H-akashiwo_Contig1089:380266..3803761681387073.186437-CDS-H-akashiwo_Contig1089:380266..380376Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1089 380267..380376 +
1681387073.1956036-CDS-H-akashiwo_Contig1089:380485..3805631681387073.1956036-CDS-H-akashiwo_Contig1089:380485..380563Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1089 380486..380563 +
1681387073.2049623-CDS-H-akashiwo_Contig1089:380729..3808021681387073.2049623-CDS-H-akashiwo_Contig1089:380729..380802Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1089 380730..380802 +
1681387073.214621-CDS-H-akashiwo_Contig1089:380938..3810581681387073.214621-CDS-H-akashiwo_Contig1089:380938..381058Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1089 380939..381058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1089.12.1

>prot_H-akashiwo_Contig1089.12.1 ID=prot_H-akashiwo_Contig1089.12.1|Name=mRNA_H-akashiwo_Contig1089.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=127bp
MAVPSGSKTLLAVSVALALFWSPTESFLGSPVATCKRVYGARGSPKIEAI
DCLNIKQDFLFSRGSVLAAGKPNEDDGEKTPSKQGNQLNGVIGFFALYLL
GFLALKATICPLEDPGEFWMNWCARM*
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mRNA from alignment at H-akashiwo_Contig1089:380193..381355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1089.12.1 ID=mRNA_H-akashiwo_Contig1089.12.1|Name=mRNA_H-akashiwo_Contig1089.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1163bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:380193..381355+ (Heterosigma akashiwo CCMP452)
AAAAAACTGGGATCACAATCTATACTACCTAGTGTTGTGGTGGAAAAGGG
GGAAAGAGAAAAGAAGAGAGGACGATGGCTGTTCCATCTGGTAGCAAGAC
CTTGCTCGCGGTTTCAGTTGCTTTGGCCCTGTTTTGGTCTCCAACTGAAT
CTTTCCTAGGAAGCCCAGTTGCGACGTGCAAAAGGTAGGTAAACAAGTTG
CTGTAGTTGTACGAATTATTGTATTTTGCCTCATCACCTACATGTTGCGT
TCACCACTGTGTATACTTGCCATTGAAATAAAATCTCGGAAAGAGTTTAC
GGCGCGAGAGGATCTCCCAAAATTGAGGCCATTGATTGCCTCAACATCAA
GCAAGATTTTCTATTCAGCAGGTGAAGCATTGGGGAAAGGGGTGGAGAGC
AAGTAAAGGACACACAGCATCGTATGACAACGGTTCAGCAGTTGTATATT
TGTCTCCTTGCCTTTCAGCGGCGACATTGTGATTGGTTTCTCGATCTCTT
GATCTTCCTTGTAAATTTATTTCTGCACACTGTGTAGAGGTTCTGTTCTT
GCTGCGGGGAAGCCAAATGAAGACGACGGCGAGAAGACTCCTTCTAAGCA
AGGCAATCAGGTGATGCAAGCCTTTTTGAAAGCCCCACTTTACAATACAT
AGCAACATTCAACCTTTTGATGGATATCATTGAATTTTAAAAACACGAAT
TTCCTTGGATAATTAATTACCTTTACCCCCAACAATAATACTGCAGTTGA
ACGGTGTGATTGGATTTTTCGCACTGTATTTGCTGGGGTTTCTGGCTCTC
AAGGCCACCATCTGCCCTTTGGAAGACCCTGGAGAGTTCTGGATGAATTG
GTGTGCTCGGATGTAAAAAATGCTGCCAGAACATATCCGTGGAATGATGT
AGACAGAGGCTTCTTGAAGAAGAACTCATGTTGTTGTTTTAATTTTGAAA
CATCGTTGTAACAAACAATATAAATATATGATTATAAGTATATTATGCAA
AGTGGAAGACAATGTCAGTTTGGGCATATAGACACTACAGAGGGGAGTGG
GGGTTAATAAAGCGTAGCGGCGCACATGATGCAATGCCACATCTTCTTTG
CTATTTGTTTGTTTCTGTTTTTTTTTATTTTTTCAATTCTGTAAATACAA
AATATCGTACTGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1089:380193..381355+

>mRNA_H-akashiwo_Contig1089.12.1 ID=mRNA_H-akashiwo_Contig1089.12.1|Name=mRNA_H-akashiwo_Contig1089.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=381bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:380193..381355+ (Heterosigma akashiwo CCMP452)
ATGGCTGTTCCATCTGGTAGCAAGACCTTGCTCGCGGTTTCAGTTGCTTT
GGCCCTGTTTTGGTCTCCAACTGAATCTTTCCTAGGAAGCCCAGTTGCGA
CGTGCAAAAGAGTTTACGGCGCGAGAGGATCTCCCAAAATTGAGGCCATT
GATTGCCTCAACATCAAGCAAGATTTTCTATTCAGCAGAGGTTCTGTTCT
TGCTGCGGGGAAGCCAAATGAAGACGACGGCGAGAAGACTCCTTCTAAGC
AAGGCAATCAGTTGAACGGTGTGATTGGATTTTTCGCACTGTATTTGCTG
GGGTTTCTGGCTCTCAAGGCCACCATCTGCCCTTTGGAAGACCCTGGAGA
GTTCTGGATGAATTGGTGTGCTCGGATGTAA
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