mRNA_H-akashiwo_Contig1089.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1089.1.1
Unique NamemRNA_H-akashiwo_Contig1089.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1089.1.1 vs. uniprot
Match: A0A7S3Y3M6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3M6_HETAK)

HSP 1 Score: 399 bits (1026), Expect = 6.600e-134
Identity = 203/213 (95.31%), Postives = 208/213 (97.65%), Query Frame = 1 
Query:    1 MQKKYCSTKPRDEAIKALLQKLQERTSQRRLDSKEDRGRGTVDDTYTVEQKKSVIPKLVGDKSSLMKVQALSTFNSSSGNFLRCASSRAQNISGLSKVDLNEGVSQSLALVFHADADKITVNGHKSSTAIMRHKDPTQCGIGSITLALMYRWNVLGEKFPNFGVPDEWLTIKLLRSQADNTKPMAYPTVYAHLKTAFLASGILCRNKTHSMRG 639
            MQKKYCSTKPRDEAIKALLQKLQERTSQRRLDSKEDRGRGTVDDTYTVEQKKSVIPKLVGDKSSLMK+Q+LS FNSSSGNFLRCASSRAQN+SGLSKVDLNEGVSQS ALVFH+DADKITVNGHKSSTAIMRHKDPTQCGIGSITLALMYRWNVLGEKFPNFGVPDEWLTIKLLRSQADNTKPMAYPTVY H+K AFL SGILCRNKTHSMRG
Sbjct:  140 MQKKYCSTKPRDEAIKALLQKLQERTSQRRLDSKEDRGRGTVDDTYTVEQKKSVIPKLVGDKSSLMKIQSLSIFNSSSGNFLRCASSRAQNMSGLSKVDLNEGVSQSWALVFHSDADKITVNGHKSSTAIMRHKDPTQCGIGSITLALMYRWNVLGEKFPNFGVPDEWLTIKLLRSQADNTKPMAYPTVYTHIKAAFLGSGILCRNKTHSMRG 352
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BLAST of mRNA_H-akashiwo_Contig1089.1.1 vs. uniprot
Match: A0A068REX3_9FUNG (Short-chain dehydrogenase putative n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068REX3_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 1.480e-10
Identity = 60/208 (28.85%), Postives = 92/208 (44.23%), Query Frame = 1 
Query:   28 PRDEAIKALLQKLQERTSQRRLDSKEDRGRGTVDDTYTVEQKKSVIPKLVGDKSSLMKVQALSTFNSSSGNFLRCASSRAQNISGLSKVDLNEGVSQSLALVFHADADKITVNGHKSSTAIMRHKDPTQCGIGSITLALMYRWNVL----GEKFPNFGVPDEWLTIKLLRSQADNTKPMAYPTVYAHLKTAFLASGILCRNKTHSMRG 639
            PRD A KA +        QR  D   DRG G++ D YT+++   V      +     + + + TF       LR   +R+  ++ +      EG ++   LV   D+ K      K   A +RHKD   C +G++ +   YRW +L     E FP F   + W   K+ +     TK + Y T Y  +  AF A  I  ++KTH+ RG
Sbjct:  161 PRDAAYKAWIHSFHYEERQRSRDMYIDRGIGSIQDGYTMDEMVKVSEYFFINGQEPHQRERM-TFLLEHVMLLRGDDTRSLELADIFVQFAEEGPTKCPVLVVMLDSGKTNQRHEKQYVAGIRHKDVRICALGAMAIYFFYRWQLLQGKDSENFPTFD-SNRWFDTKVCKG-FHKTKKIHYVTQYRMITKAFNACNIHSKHKTHAGRG 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1089.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3Y3M6_HETAK6.600e-13495.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A068REX3_9FUNG1.480e-1028.85Short-chain dehydrogenase putative n=1 Tax=Lichthe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1089contigH-akashiwo_Contig1089:142773..143411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI54292
PFAMsGCR1_C,NDC10_II
Model size639
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.33e-19
EggNOG OGs2C4CW@1|root,2S2VN@2759|Eukaryota,3QI4H@4776|Peronosporales
DescriptionCentromere DNA-binding protein complex CBF3 subunit, domain 2
Cds size639
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.2679598-CDS-H-akashiwo_Contig1089:142772..1434111681387073.2679598-CDS-H-akashiwo_Contig1089:142772..143411Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1089 142773..143411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1089.1.1prot_H-akashiwo_Contig1089.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1089 142773..143411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1089.1.1

>prot_H-akashiwo_Contig1089.1.1 ID=prot_H-akashiwo_Contig1089.1.1|Name=mRNA_H-akashiwo_Contig1089.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=213bp
MQKKYCSTKPRDEAIKALLQKLQERTSQRRLDSKEDRGRGTVDDTYTVEQ
KKSVIPKLVGDKSSLMKVQALSTFNSSSGNFLRCASSRAQNISGLSKVDL
NEGVSQSLALVFHADADKITVNGHKSSTAIMRHKDPTQCGIGSITLALMY
RWNVLGEKFPNFGVPDEWLTIKLLRSQADNTKPMAYPTVYAHLKTAFLAS
GILCRNKTHSMRG
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mRNA from alignment at H-akashiwo_Contig1089:142773..143411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1089.1.1 ID=mRNA_H-akashiwo_Contig1089.1.1|Name=mRNA_H-akashiwo_Contig1089.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=639bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:142773..143411+ (Heterosigma akashiwo CCMP452)
ATGCAGAAAAAATATTGTTCAACCAAGCCCCGTGACGAGGCAATCAAAGC
TTTACTCCAAAAACTGCAAGAGAGGACTAGTCAGAGAAGACTGGATAGCA
AAGAGGACAGAGGTCGCGGCACTGTGGATGACACCTACACTGTAGAGCAA
AAGAAGAGCGTGATCCCCAAGTTGGTTGGGGACAAATCAAGCTTGATGAA
AGTTCAGGCTCTTTCCACTTTCAACTCCTCCTCAGGAAATTTTCTCAGAT
GCGCCAGCTCTAGGGCACAAAATATTTCTGGGCTCAGTAAGGTTGACTTG
AACGAAGGTGTGAGTCAAAGTTTGGCCCTAGTCTTTCATGCAGACGCGGA
TAAAATCACTGTGAACGGGCACAAATCAAGCACCGCGATTATGCGCCACA
AAGATCCAACGCAGTGTGGCATCGGCTCCATAACCCTCGCCCTTATGTAC
AGATGGAATGTTCTTGGAGAGAAGTTCCCAAACTTTGGTGTGCCGGACGA
ATGGCTCACAATCAAGCTGCTCAGGTCACAGGCTGACAACACCAAACCCA
TGGCCTACCCGACTGTGTATGCCCACCTTAAGACGGCCTTCCTAGCTTCG
GGGATACTGTGCAGGAACAAGACACACAGCATGCGAGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1089:142773..143411+

>mRNA_H-akashiwo_Contig1089.1.1 ID=mRNA_H-akashiwo_Contig1089.1.1|Name=mRNA_H-akashiwo_Contig1089.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=639bp|location=Sequence derived from alignment at H-akashiwo_Contig1089:142773..143411+ (Heterosigma akashiwo CCMP452)
ATGCAGAAAAAATATTGTTCAACCAAGCCCCGTGACGAGGCAATCAAAGC
TTTACTCCAAAAACTGCAAGAGAGGACTAGTCAGAGAAGACTGGATAGCA
AAGAGGACAGAGGTCGCGGCACTGTGGATGACACCTACACTGTAGAGCAA
AAGAAGAGCGTGATCCCCAAGTTGGTTGGGGACAAATCAAGCTTGATGAA
AGTTCAGGCTCTTTCCACTTTCAACTCCTCCTCAGGAAATTTTCTCAGAT
GCGCCAGCTCTAGGGCACAAAATATTTCTGGGCTCAGTAAGGTTGACTTG
AACGAAGGTGTGAGTCAAAGTTTGGCCCTAGTCTTTCATGCAGACGCGGA
TAAAATCACTGTGAACGGGCACAAATCAAGCACCGCGATTATGCGCCACA
AAGATCCAACGCAGTGTGGCATCGGCTCCATAACCCTCGCCCTTATGTAC
AGATGGAATGTTCTTGGAGAGAAGTTCCCAAACTTTGGTGTGCCGGACGA
ATGGCTCACAATCAAGCTGCTCAGGTCACAGGCTGACAACACCAAACCCA
TGGCCTACCCGACTGTGTATGCCCACCTTAAGACGGCCTTCCTAGCTTCG
GGGATACTGTGCAGGAACAAGACACACAGCATGCGAGGG
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