mRNA_H-akashiwo_Contig1088.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1088.3.1
Unique NamemRNA_H-akashiwo_Contig1088.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 445 bits (1145), Expect = 5.340e-155
Identity = 216/287 (75.26%), Postives = 246/287 (85.71%), Query Frame = 1
Query:    4 SFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTTATDLNPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKNIMWLRHLLLVDLSCPQVEPTPVVEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVELGTIQMHYAKTSDQLADIFTKALNAEVFD 864
            S  S++S+TD G LT ILGIKV RD  NKCF+LSQ SF++DA++KFGLDYLPAC+TP+    DL PTPGFKA L DAN YRSMVGTLAWVANWTRPELAF VHKLQR Q NPEPKHFEA QR FRYLKGTQSE LRLGGDLVLRA++D+DFC DR+DGKSVTGY++ LGD+PIVW+SKLQ AVTTSTVEAEYLALRS +K+IMWLR LL  ++ CPQ EPTPVVEDNSAC+EWA DM+V+++ RHFHVSYHLAKEQV LGTI+M Y KT DQ+ADI TKALNA  F+
Sbjct:   56 SLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLL-EEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 341          
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 226 bits (575), Expect = 8.330e-64
Identity = 118/279 (42.29%), Postives = 172/279 (61.65%), Query Frame = 1
Query:   19 FSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTTATD--LNPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKNIMWLRHLLLVDLSCPQVEPTPVVEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVELGTIQMHYAKTSDQLADIFTKALN 849
            ++++D+G + SILGIKV RD T +   LSQ SF+ +A  KF +        P+    D  +N     + S  +A ++RS+VGT+ W+A WT PE+A+++H L +   +P      A+  + RYL  T+ + + LGG L L AY DADFC +R  G+S +G+ I LG SPI+W+S++Q  VT +T EAEY++LR+ + ++MWL+ LL   L   Q    P+ EDN ACI WA D  VS+  RH HVSYH  KE V+   I++ Y  T  Q+AD+FTK L+
Sbjct:  706 YNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLL-ESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLD 982          
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 198 bits (504), Expect = 4.320e-59
Identity = 94/127 (74.02%), Postives = 105/127 (82.68%), Query Frame = 1
Query:    4 SFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTTATDLNPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYL 384
            S  S++++TD G LT ILGIKV RD  NKCF+LSQ SF++DA++KFGLDYLPAC+TP+    DL PTPGFKA L DAN YRSMVGTLAWVANWTRPELAF VHKLQR Q NPEPKHFEA QR FRYL
Sbjct:  142 SLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A409X0Q5_9AGAR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409X0Q5_9AGAR)

HSP 1 Score: 185 bits (469), Expect = 3.430e-50
Identity = 111/296 (37.50%), Postives = 168/296 (56.76%), Query Frame = 1
Query:   13 SRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFG-LDYLPACRTPMTTATDLNPTPGFKASLPDANR----------YRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRLGGD--LVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKNIMWLRHLLLVDLSCPQVEPTPVVEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVELGTIQMHYAKTSDQLADIFTKALNAEVF 861
            S++ +TDLG    I+GI + RD  N+  YLSQ + +    S+FG  D LPA  TPM         PG K ++P              YRS++G + ++A  TRP+++FA+  L ++ +  +  H+ AA RV RYLKGT+S RL LGGD  + L  YTD+D+ Q   + KSV+GY   LGD  I W ++ Q  V+TS+ EAEY+A     K  +WLR++L  +L   + +P  +  DN+A I  + D  +  + +H  + YH  +++V+   + +H   T D +ADIFTKAL+   F
Sbjct:  372 SKWQVTDLGEPKHIVGIGIHRDRPNRKIYLSQTALIDRLTSQFGQTDALPAS-TPMD--------PGLKLTVPAKGSVDRTITSKLPYRSLIGAMLYIAVGTRPDISFAIQNLSQFLDTYDQSHWNAAIRVLRYLKGTRSLRLALGGDNGISLLGYTDSDWSQCINNRKSVSGYGFTLGDGLISWCARKQRTVSTSSCEAEYIAAFEATKEALWLRNILS-ELDLIKPDPVRIECDNTAAIRLSEDPSLHARVKHIDIKYHFIRDRVQKKQVFLHQIGTKDNIADIFTKALDKNTF 657          
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 179 bits (454), Expect = 4.400e-50
Identity = 104/282 (36.88%), Postives = 159/282 (56.38%), Query Frame = 1
Query:   19 FSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTTATDLN----PTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRLGGDLV--LRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKNIMWLRHLLLVDLSCPQVEPTPVVEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVELGTIQMHYAKTSDQLADIFTKAL 846
            F + DLG +  ILGI+V  D   K   L Q  ++ D + +F         TP+  +  +     P    + ++     +RS++G+L+++A  TRP++A AV +L RY  NP  +H++AA ++ RYLKGT++  +  GG +   L AY+DAD+  DR D +SV+G V+ML  +P+VW +  Q  V  ST EAEY+AL   +K  MW R LLL +L   Q   T + EDN   I  AR+     +T+H  + YH  +E++  G I++ Y  T +Q+AD  TK L
Sbjct:   95 FKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWAR-LLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A6A4DK21_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DK21_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.110e-50
Identity = 102/282 (36.17%), Postives = 158/282 (56.03%), Query Frame = 1
Query:   19 FSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTTATDLN----PTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRLGGDLV--LRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKNIMWLRHLLLVDLSCPQVEPTPVVEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVELGTIQMHYAKTSDQLADIFTKAL 846
            F + DLG +  ILGI+V  D  +K   L Q  ++ D + +F         TP+  +  +     P    + ++     +RS++G+L+++A  TRP++A AV +L RY  NP  +H++AA ++ RYLKGT++  +   G +   L AY+DAD+  DR D +SV+G V+ML  +P+VW +  Q  V  ST E EY+AL   +K  MW R LLL +L   Q   T + EDN   I  AR+     +T+H  + YH  +E++  G I++ Y  T +Q+AD  TK L
Sbjct:   15 FKLKDLGAVRYILGIEVHHDIADKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQAEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFDGKMPPELIAYSDADWGSDRDDRRSVSGTVLMLFSAPVVWKTGFQKTVALSTTETEYMALTMCVKECMWAR-LLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 295          
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A507DR08_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DR08_9FUNG)

HSP 1 Score: 186 bits (472), Expect = 6.490e-50
Identity = 112/297 (37.71%), Postives = 169/297 (56.90%), Query Frame = 1
Query:    1 SSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTTATDLNP--TPGFKASL-PDANRYRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRLGGDLV-LRAYTDADFCQDRIDGKSVTGYVIMLGDS-PIVWASKLQTAVTTSTVEAEYLALRSGLKNIMWLRHLLLVDLSCPQ-----VEPTPVVEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVELGTIQMHYAKTSDQLADIFTKALNAEVF 861
            +S  + F+ T+LG +   LG++V RD+T    YL Q S+V D + +FG+       TPM   T L P      K S  P    YR +VG+L ++   TRP++A AV  L R+ +NP P+H +AA+RV RYL+GT +  L +GG+ V L  Y+DAD+  + ID +S+TGY+  +G++ P+ WASK Q  V  S+ EAEY+AL    +   WLR LL  +L  P+        T + +DN +CI  A + V   +T+H  + +H  ++ V+   I + Y  T++ +AD  TK L A  F
Sbjct:  439 ASLHNEFNTTNLGKVNHYLGMRVRRDYTRHVIYLDQESYVNDILERFGMQDCKPVNTPMDQ-TKLEPYEVENTKTSPNPQEGEYREIVGSLMYLMICTRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSTYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFCIGNAGPVTWASKRQPTVALSSTEAEYMALSFATQETTWLRSLLQ-ELQIPEYLDENARSTTIYKDNQSCISLAMNPVHHARTKHIDIRHHFIRDHVDK-EIHLEYLPTAEMVADSLTKPLPAPAF 732          
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A2N9J7J4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J7J4_FAGSY)

HSP 1 Score: 186 bits (471), Expect = 1.810e-49
Identity = 107/278 (38.49%), Postives = 153/278 (55.04%), Query Frame = 1
Query:   16 RFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTTATDLNPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRLGGD--LVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKNIMWLRHLLLVDLSCPQVEPTPVVEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVELGTIQMHYAKTSDQLADIFTKA 843
            +F + DLG L+  LG++V+   ++ C+YLSQA +  D +SK GL       TP+     LN T G    L DA  YR +VG+L ++   TRP+LA+AVH + ++ + P   H+ A  R+ RY+KGT    L       L LRAY DAD+  D  D +S TGY  +LG S I W SK Q+ V  S+ EAEY AL      ++WLR LL  D+  PQ   TP+  DN + I  A + V    T+H  +  H  +  ++   + +    + DQLAD+FTK+
Sbjct:  941 QFEMKDLGTLSYFLGLEVTS--SSDCYYLSQAKYASDLLSKAGLTDSKTVSTPLELNVKLNTTDG--EPLSDATLYRQLVGSLIYLTV-TRPDLAYAVHLVSQFMSAPRSTHYAAVLRILRYIKGTLFHGLHFSAQSSLELRAYADADWAGDPTDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADATSELLWLRWLL-ADMGAPQTTSTPIHRDNRSAIHIAHNDVFHEHTKHIEIDCHFIRHHLQQSALHLLSVSSEDQLADVFTKS 1212          
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A2I0WZT5_9ASPA (Putative mitochondrial protein n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WZT5_9ASPA)

HSP 1 Score: 176 bits (445), Expect = 2.320e-49
Identity = 102/283 (36.04%), Postives = 165/283 (58.30%), Query Frame = 1
Query:   16 RFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTTATDLNPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRL-GGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKNIMWLRHLLLVDLSCPQVEPTPVVEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVELGTIQMHYAKTSDQLADIFTKALNAEVF 861
            RF++ +LGP++  LG++V   HT   F+LSQ+ +    + K G++      TP+ + T  +P+     S   A  Y  +VG+L ++   TRP++A+ V++L +Y + P   HF   +R+ +YL+GT S  L L   +L LRAY+D+D+  D +D KS TGY   LG + I W  K Q  V  S+ EAEY AL +   +I+WL+ LL  +       PTP+  DN + I  A + V   +T+H  + +H  +E ++  T+Q+H+  ++DQ+AD+FTKAL+ + F
Sbjct:   31 RFNMRNLGPISHFLGMQVL--HTPSGFHLSQSRYAAQILKKAGMENSKPISTPIASKTLCHPSS--LLSTDTAALYTQLVGSLQYLT-LTRPDIAYTVNRLCQYMHQPHEDHFRLLKRLLQYLQGTLSFGLPLVAANLHLRAYSDSDWAGDLVDRKSTTGYCAFLGSNLISWQVKKQKTVARSSTEAEYRALATAATDIIWLKRLL-AEFQINSSTPTPLFCDNVSSIALANNPVFHARTKHIEIDFHFVRECIKNATLQVHHIHSTDQIADLFTKALSLQRF 307          
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.980e-49
Identity = 103/292 (35.27%), Postives = 162/292 (55.48%), Query Frame = 1
Query:    1 SSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMT-----TATDLNPTPGFKASLPDANRYRSMVGTLAWVANWTRPELAFAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRLGGDL--VLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGLKNIMWLRHLLLVDLSCPQVEPTPVVEDNSACIEWARDMVVSRKTRHFHVSYHLAKEQVELGTIQMHYAKTSDQLADIFTKALNAE 855
            +    +F I D+G    ILGI++  D   +   +S  ++    I KFG +    C TP+      T  D   T   KA +  +  YRS+VG+L ++A  TRP+++ AV KL R+  NP  KH++A  +V RYL  T+   +   G L   L AY+DAD+  +R D +SV+G ++ML  +P+VW S  Q  V  S+ EAEY+AL   +K  +W+R LL  D+   QV  T + EDN   +  A+++    +T+H  + YH  +E+V    +++ Y  T++QLAD  TK L+++
Sbjct:   16 AGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMK-SKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLK-DIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTKCLSSK 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1088.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK5.340e-15575.26Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK8.330e-6442.29Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK4.320e-5974.02Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A409X0Q5_9AGAR3.430e-5037.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3JMT1_9STRA4.400e-5036.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4DK21_9STRA6.110e-5036.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A507DR08_9FUNG6.490e-5037.71DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
A0A2N9J7J4_FAGSY1.810e-4938.49Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2I0WZT5_9ASPA2.320e-4936.04Putative mitochondrial protein n=1 Tax=Dendrobium ... [more]
A0A6A3GI70_9STRA3.980e-4935.27Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1088contigH-akashiwo_Contig1088:313545..314408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2711.XP_006493639.1
PFAMsRVT_2
Model size864
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.98e-47
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37Y8N@33090|Viridiplantae,3GXD3@35493|Streptophyta
DescriptionLRR receptor-like serine threonine-protein kinase
Cds size864
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.14144-CDS-H-akashiwo_Contig1088:313544..3144081681387073.14144-CDS-H-akashiwo_Contig1088:313544..314408Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1088 313545..314408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1088.3.1prot_H-akashiwo_Contig1088.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1088 313545..314408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1088.3.1

>prot_H-akashiwo_Contig1088.3.1 ID=prot_H-akashiwo_Contig1088.3.1|Name=mRNA_H-akashiwo_Contig1088.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=288bp
SSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLD
YLPACRTPMTTATDLNPTPGFKASLPDANRYRSMVGTLAWVANWTRPELA
FAVHKLQRYQNNPEPKHFEAAQRVFRYLKGTQSERLRLGGDLVLRAYTDA
DFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAVTTSTVEAEYLALRSGL
KNIMWLRHLLLVDLSCPQVEPTPVVEDNSACIEWARDMVVSRKTRHFHVS
YHLAKEQVELGTIQMHYAKTSDQLADIFTKALNAEVFD
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mRNA from alignment at H-akashiwo_Contig1088:313545..314408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1088.3.1 ID=mRNA_H-akashiwo_Contig1088.3.1|Name=mRNA_H-akashiwo_Contig1088.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=864bp|location=Sequence derived from alignment at H-akashiwo_Contig1088:313545..314408+ (Heterosigma akashiwo CCMP452)
TCCTCCTTTGTTTCGCGTTTCAGCATCACTGATCTTGGTCCTCTTACTTC TATTCTCGGCATCAAAGTTTCTCGGGACCATACGAATAAGTGTTTCTACC TCAGCCAAGCCTCCTTCGTCAGGGACGCCATCTCTAAGTTCGGTTTGGAC TATCTGCCTGCTTGTCGCACCCCAATGACCACTGCTACCGATTTGAACCC CACTCCTGGCTTCAAGGCCTCCTTGCCTGATGCCAACAGGTATAGGTCGA TGGTTGGCACTCTTGCCTGGGTTGCCAACTGGACTCGGCCTGAGCTTGCT TTTGCTGTTCACAAGCTTCAACGGTATCAGAATAACCCTGAGCCCAAGCA CTTTGAGGCCGCCCAACGAGTATTCAGGTATCTCAAAGGCACTCAGTCTG AGAGGCTGCGGCTTGGGGGGGACCTGGTCCTTCGGGCATATACTGATGCT GACTTCTGCCAGGACAGGATTGATGGCAAATCTGTCACAGGCTATGTCAT TATGCTTGGGGACTCACCTATTGTGTGGGCCTCAAAGCTTCAGACTGCGG TCACTACATCCACTGTGGAGGCTGAATATTTGGCACTGAGATCTGGGCTC AAGAATATAATGTGGCTGAGACATCTTCTTCTTGTGGATCTTTCATGCCC TCAAGTGGAGCCTACACCAGTCGTTGAGGATAACTCTGCCTGTATAGAAT GGGCCAGGGACATGGTTGTCTCAAGGAAGACCAGGCATTTTCATGTTTCT TATCACCTGGCTAAAGAACAAGTGGAGCTTGGGACCATCCAAATGCACTA TGCCAAGACAAGTGATCAGTTGGCAGACATCTTCACTAAGGCTTTGAATG CAGAGGTTTTTGAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1088:313545..314408+

>mRNA_H-akashiwo_Contig1088.3.1 ID=mRNA_H-akashiwo_Contig1088.3.1|Name=mRNA_H-akashiwo_Contig1088.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=864bp|location=Sequence derived from alignment at H-akashiwo_Contig1088:313545..314408+ (Heterosigma akashiwo CCMP452)
TCCTCCTTTGTTTCGCGTTTCAGCATCACTGATCTTGGTCCTCTTACTTC
TATTCTCGGCATCAAAGTTTCTCGGGACCATACGAATAAGTGTTTCTACC
TCAGCCAAGCCTCCTTCGTCAGGGACGCCATCTCTAAGTTCGGTTTGGAC
TATCTGCCTGCTTGTCGCACCCCAATGACCACTGCTACCGATTTGAACCC
CACTCCTGGCTTCAAGGCCTCCTTGCCTGATGCCAACAGGTATAGGTCGA
TGGTTGGCACTCTTGCCTGGGTTGCCAACTGGACTCGGCCTGAGCTTGCT
TTTGCTGTTCACAAGCTTCAACGGTATCAGAATAACCCTGAGCCCAAGCA
CTTTGAGGCCGCCCAACGAGTATTCAGGTATCTCAAAGGCACTCAGTCTG
AGAGGCTGCGGCTTGGGGGGGACCTGGTCCTTCGGGCATATACTGATGCT
GACTTCTGCCAGGACAGGATTGATGGCAAATCTGTCACAGGCTATGTCAT
TATGCTTGGGGACTCACCTATTGTGTGGGCCTCAAAGCTTCAGACTGCGG
TCACTACATCCACTGTGGAGGCTGAATATTTGGCACTGAGATCTGGGCTC
AAGAATATAATGTGGCTGAGACATCTTCTTCTTGTGGATCTTTCATGCCC
TCAAGTGGAGCCTACACCAGTCGTTGAGGATAACTCTGCCTGTATAGAAT
GGGCCAGGGACATGGTTGTCTCAAGGAAGACCAGGCATTTTCATGTTTCT
TATCACCTGGCTAAAGAACAAGTGGAGCTTGGGACCATCCAAATGCACTA
TGCCAAGACAAGTGATCAGTTGGCAGACATCTTCACTAAGGCTTTGAATG
CAGAGGTTTTTGAT
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