mRNA_H-akashiwo_Contig1087.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1087.6.1
Unique NamemRNA_H-akashiwo_Contig1087.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1087.6.1 vs. uniprot
Match: A0A7S3Y138_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y138_HETAK)

HSP 1 Score: 140 bits (352), Expect = 2.550e-40
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 2 
Query:    2 DYTLNMEGCIDQLEIGKLQESLSKMERALQLSDRRINDLKQNLKLAWDDQAQILQAHPARGEDLQTEFAK 211
            DYTLNMEGCIDQLEIGKLQESLSKMERALQLSDRRINDLKQNLKLAWDDQAQILQAHPARGEDLQTEFAK
Sbjct:  132 DYTLNMEGCIDQLEIGKLQESLSKMERALQLSDRRINDLKQNLKLAWDDQAQILQAHPARGEDLQTEFAK 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1087.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y138_HETAK2.550e-40100.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1087contigH-akashiwo_Contig1087:391052..392208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size220
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.020059-UTR-H-akashiwo_Contig1087:391051..3910671681387073.020059-UTR-H-akashiwo_Contig1087:391051..391067Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1087 391052..391067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387073.0329282-CDS-H-akashiwo_Contig1087:391067..3911561681387073.0329282-CDS-H-akashiwo_Contig1087:391067..391156Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1087 391068..391156 +
1681387073.041195-CDS-H-akashiwo_Contig1087:392093..3922081681387073.041195-CDS-H-akashiwo_Contig1087:392093..392208Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1087 392094..392208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1087.6.1prot_H-akashiwo_Contig1087.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1087 391068..392208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1087.6.1

>prot_H-akashiwo_Contig1087.6.1 ID=prot_H-akashiwo_Contig1087.6.1|Name=mRNA_H-akashiwo_Contig1087.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=68bp
MEGCIDQLEIGKLQESLSKMERALQLSDRRINDLKQNLKLAWDDQAQILQ
AHPARGEDLQTEFAKGG*
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mRNA from alignment at H-akashiwo_Contig1087:391052..392208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1087.6.1 ID=mRNA_H-akashiwo_Contig1087.6.1|Name=mRNA_H-akashiwo_Contig1087.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1157bp|location=Sequence derived from alignment at H-akashiwo_Contig1087:391052..392208+ (Heterosigma akashiwo CCMP452)
GGATTACACGTTAAATATGGAGGGCTGCATCGATCAGCTCGAGATTGGAA
AGCTCCAGGAAAGTCTTTCCAAAATGGAAAGAGCTCTCCAGTTATCTGAT
CGCAGGTGAAGCTAATGGTTGTTGGATTTTATTGAATAAAAACAGCAAAC
ATATACCTTTAGGATTGGGACTATAGACGGGGTTGATGCTTTTAGGGATT
GGTCACATCATTGTTTGATGGGAGGGATATATAATGTCGTATAGTATATG
GAGTATAGCCTTGGCCATGAAACTCTCCAACAGCAGCGCATAGAGGGTTT
CATCCCACTCAGAAAGCAGCTGCAACGTCATATTATTGTCTTCCAGGCAA
TGAAACAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AATGCAAATGACATCGGCCACCCTTGGGGGCCAGGGGAGGGGTGGTGCAG
CCGTGCAAGGGGGTAGGGGTAGATTGGCTGGGGGAAGAGGGGGACGGGGC
AGGGGCCCTGGGCTGGACAGGGAGAAGTCAGCTAGAGTTGGGGGGGGTGC
GGCGAGCGTTGCGCAGCACCCTCCACTGCAGGCCAAACTCAGTCTTGGAA
GTGGCGACTTGTTGATGGATATAGCTGTGGGAAGTGTGGCCTCGTAAAGT
ACCCTACTAGGCAACTTGGAGGACGGGAAAACCTTCTTCACTGCCGTGTT
TGTTGAGCTGGGTAACCCACGGACGCAGTTTCATGTGAATTTCATTTGGC
ATAATCCAGCTGGGGATTGAGAAGTCATATGGTAGTAGGTAGGGGCGGCT
TGGGTGGGGGGTTCACACCCCAGGTGTACATTGATGAAGGCACAGCTGGG
GGGGTACTGAAGATACTTGTTCTTTTGTTCTTATGATGATCAGGGCAGGG
GTAATGAGAAATGGCAGGTACAGAAGTGGAAGGGTCTGCTGAAAGCGGTT
TGAAAGGTTACACTTGAAACTGAAAAAACTGAACATCATCAGCATACAAT
AATACAATATATATTTACCTCCCCGGTGGTATGCTTTATTAGGATAAACG
ACCTGAAGCAAAATCTGAAGCTTGCTTGGGATGATCAGGCACAGATATTG
CAGGCCCATCCTGCACGTGGTGAAGACCTACAGACTGAATTCGCCAAGGG
TGGGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1087:391052..392208+

>mRNA_H-akashiwo_Contig1087.6.1 ID=mRNA_H-akashiwo_Contig1087.6.1|Name=mRNA_H-akashiwo_Contig1087.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=204bp|location=Sequence derived from alignment at H-akashiwo_Contig1087:391052..392208+ (Heterosigma akashiwo CCMP452)
ATGGAGGGCTGCATCGATCAGCTCGAGATTGGAAAGCTCCAGGAAAGTCT
TTCCAAAATGGAAAGAGCTCTCCAGTTATCTGATCGCAGGATAAACGACC
TGAAGCAAAATCTGAAGCTTGCTTGGGATGATCAGGCACAGATATTGCAG
GCCCATCCTGCACGTGGTGAAGACCTACAGACTGAATTCGCCAAGGGTGG
GTGA
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