mRNA_H-akashiwo_Contig1086.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1086.6.1
Unique NamemRNA_H-akashiwo_Contig1086.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: A0A6V1KFW8_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KFW8_HETAK)

HSP 1 Score: 225 bits (574), Expect = 3.000e-72
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:   46 MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELLDFS 369
            MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELLDFS
Sbjct:    1 MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELLDFS 108
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BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: A0A1A8FIZ3_9TELE (Peptidylprolyl isomerase n=3 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8FIZ3_9TELE)

HSP 1 Score: 177 bits (450), Expect = 1.880e-53
Identity = 84/107 (78.50%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:   46 MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELLDF 366
            MGVEVET+ PGD  NFP +G TV VHYVGTLT+G +FDSSR RG PF+F+LG G VIR WDEGVAQMS GQVA+LT SPDYAYG+RGYPPVIPPNSTLIFEVELL F
Sbjct:    1 MGVEVETLRPGDGQNFPPRGRTVVVHYVGTLTNGKKFDSSRDRGEPFQFKLGAGEVIRGWDEGVAQMSLGQVARLTVSPDYAYGSRGYPPVIPPNSTLIFEVELLKF 107
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BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: A0A7J5ZAH7_DISMA (Peptidylprolyl isomerase n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5ZAH7_DISMA)

HSP 1 Score: 177 bits (450), Expect = 2.200e-53
Identity = 83/113 (73.45%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:   31 LQKGRMGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELLDFS 369
            ++K  MGVEVET+ PGD   FPQ+G TV VHYVGTLT+G +FDSSR RG+PF+F++G G VIRAWDEGVAQMS GQ+A+LTCS DYAYGARG+PPVIP NSTLIFEVELL  S
Sbjct:    1 MEKRTMGVEVETLRPGDGRTFPQKGQTVFVHYVGTLTNGNKFDSSRDRGQPFKFKIGQGQVIRAWDEGVAQMSVGQMARLTCSSDYAYGARGFPPVIPGNSTLIFEVELLSIS 113
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BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: A0A6P8TNC8_GYMAC (Peptidylprolyl isomerase n=3 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8TNC8_GYMAC)

HSP 1 Score: 178 bits (452), Expect = 3.810e-53
Identity = 84/113 (74.34%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:   31 LQKGRMGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELLDFS 369
            L+K  MGVEVET+ PGD   FPQ+G TV VHYVGTLT+G +FDSSR RG+PF+F++G G VIRAWDEGVAQMS GQ+A+LTCS DYAYGARG+PPVIP NSTLIFEVELL  S
Sbjct:   40 LEKRTMGVEVETLRPGDGRTFPQKGQTVFVHYVGTLTNGNKFDSSRDRGQPFKFKIGQGQVIRAWDEGVAQMSVGQMARLTCSSDYAYGARGFPPVIPGNSTLIFEVELLSIS 152
[Close]
BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: UPI001BD59F3C (peptidyl-prolyl cis-trans isomerase FKBP1A-like n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD59F3C)

HSP 1 Score: 176 bits (447), Expect = 5.180e-53
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:   46 MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELL 360
            MGVEV+T+ PGD  NFPQ+G TV VHYVGTLT+G +FDSSR R  PF+F++G G VIRAWDEGVAQMS G+VAKLTCSPDYAYG  GYPPVIPPN+TLIFEVELL
Sbjct:    1 MGVEVQTLKPGDGVNFPQRGRTVTVHYVGTLTNGKKFDSSRDRAEPFQFKIGKGEVIRAWDEGVAQMSVGEVAKLTCSPDYAYGCSGYPPVIPPNATLIFEVELL 105
[Close]
BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: A0A3B5ALI8_9TELE (Peptidylprolyl isomerase n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B5ALI8_9TELE)

HSP 1 Score: 176 bits (447), Expect = 5.340e-53
Identity = 81/108 (75.00%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:   46 MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELLDFS 369
            MGV+VE I PGD T++P +G TV VHYVGTLT+G +FDSSR RG PFEF+LG G VIR WDEGVAQMS G+VAKLTCSPDYAYG++GYPP+IP NSTLIFEVELL+F+
Sbjct:    1 MGVDVEVIKPGDGTSYPGKGQTVTVHYVGTLTNGKKFDSSRDRGDPFEFKLGKGQVIRGWDEGVAQMSLGEVAKLTCSPDYAYGSKGYPPIIPANSTLIFEVELLNFA 108
[Close]
BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: A0A6P7K152_9TELE (Peptidylprolyl isomerase n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7K152_9TELE)

HSP 1 Score: 176 bits (446), Expect = 7.570e-53
Identity = 81/105 (77.14%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:   46 MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELL 360
            MGV+VETI PGD  ++PQ+G TV VHYVGTLT+GT+FDSSR RG PF+F+LG G VIR WDEGVAQMS GQVA+LTCSPDYAYG++GYPP+IP NSTLIFEVELL
Sbjct:    1 MGVDVETIRPGDGHSYPQKGQTVTVHYVGTLTNGTKFDSSRDRGTPFKFKLGAGQVIRGWDEGVAQMSIGQVARLTCSPDYAYGSKGYPPIIPANSTLIFEVELL 105
[Close]
BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: A0A8C9WPS8_SANLU (Peptidylprolyl isomerase n=5 Tax=Percidae TaxID=8165 RepID=A0A8C9WPS8_SANLU)

HSP 1 Score: 176 bits (445), Expect = 1.070e-52
Identity = 83/105 (79.05%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   46 MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELL 360
            MGVEVETI PGD   FPQ G  V VHYVGTLT+G +FDSSR RG PF+F++G G VIRAWDEGVA+MS GQVAKLTCSPDYAYGA+GYPPVIP NSTLIFEVELL
Sbjct:    1 MGVEVETIRPGDGKTFPQSGQNVSVHYVGTLTNGKKFDSSRDRGDPFKFKIGQGQVIRAWDEGVAKMSVGQVAKLTCSPDYAYGAKGYPPVIPGNSTLIFEVELL 105
[Close]
BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: A0A3Q2UR64_FUNHE (Peptidylprolyl isomerase n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2UR64_FUNHE)

HSP 1 Score: 175 bits (443), Expect = 2.080e-52
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   46 MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELL 360
            MGVEVETI PGD   FPQ+G TV VHYVGTLT+G +FDSSR RG PF F+LG G VIR WDEGVAQMS GQ+AKLTCSPDYAYG++GYPP+IP NSTLIFEVELL
Sbjct:    1 MGVEVETIRPGDGKTFPQRGKTVSVHYVGTLTNGKKFDSSRDRGEPFMFKLGAGEVIRGWDEGVAQMSLGQLAKLTCSPDYAYGSKGYPPIIPANSTLIFEVELL 105
[Close]
BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Match: UPI001A998CE4 (FK506-binding protein 1-like n=1 Tax=Xiphias gladius TaxID=8245 RepID=UPI001A998CE4)

HSP 1 Score: 175 bits (443), Expect = 2.080e-52
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:   46 MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQLGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIFEVELL 360
            MGVEVET+ PGD   FPQ+G+ V VHYVGTLT+G +FDSSR RG PF+F+LG G VIR WDEGVAQMS GQVAKLTCSPDYAYG+RGYPP+IP NSTL+FEVELL
Sbjct:    1 MGVEVETLKPGDGKTFPQKGHDVTVHYVGTLTNGKKFDSSRDRGDPFKFRLGEGQVIRGWDEGVAQMSLGQVAKLTCSPDYAYGSRGYPPIIPANSTLVFEVELL 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1086.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1KFW8_HETAK3.000e-72100.00Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A1A8FIZ3_9TELE1.880e-5378.50Peptidylprolyl isomerase n=3 Tax=Nothobranchiidae ... [more]
A0A7J5ZAH7_DISMA2.200e-5373.45Peptidylprolyl isomerase n=1 Tax=Dissostichus maws... [more]
A0A6P8TNC8_GYMAC3.810e-5374.34Peptidylprolyl isomerase n=3 Tax=Notothenioidei Ta... [more]
UPI001BD59F3C5.180e-5377.14peptidyl-prolyl cis-trans isomerase FKBP1A-like n=... [more]
A0A3B5ALI8_9TELE5.340e-5375.00Peptidylprolyl isomerase n=1 Tax=Stegastes partitu... [more]
A0A6P7K152_9TELE7.570e-5377.14Peptidylprolyl isomerase n=1 Tax=Parambassis ranga... [more]
A0A8C9WPS8_SANLU1.070e-5279.05Peptidylprolyl isomerase n=5 Tax=Percidae TaxID=81... [more]
A0A3Q2UR64_FUNHE2.080e-5278.10Peptidylprolyl isomerase n=1 Tax=Fundulus heterocl... [more]
UPI001A998CE42.080e-5277.14FK506-binding protein 1-like n=1 Tax=Xiphias gladi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1086contigH-akashiwo_Contig1086:108777..109572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog303518.XP_005742537.1
PFAMsFKBP_C
Model size796
Max annot lvl33208|Metazoa
KEGG koko:K09568
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.9e-57
EggNOG OGsCOG0545@1|root,KOG0544@2759|Eukaryota,3A3EV@33154|Opisthokonta,3BRJS@33208|Metazoa,3D8CB@33213|Bilateria,48EPX@7711|Chordata
EC5.2.1.8
DescriptionFK506 binding
Cds size327
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.9629042-UTR-H-akashiwo_Contig1086:108776..1088211681387072.9629042-UTR-H-akashiwo_Contig1086:108776..108821Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1086 108777..108821 +
1681387072.9853783-UTR-H-akashiwo_Contig1086:109148..1095721681387072.9853783-UTR-H-akashiwo_Contig1086:109148..109572Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1086 109149..109572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.9751425-CDS-H-akashiwo_Contig1086:108821..1091481681387072.9751425-CDS-H-akashiwo_Contig1086:108821..109148Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1086 108822..109148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1086.6.1prot_H-akashiwo_Contig1086.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1086 108822..109148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1086.6.1

>prot_H-akashiwo_Contig1086.6.1 ID=prot_H-akashiwo_Contig1086.6.1|Name=mRNA_H-akashiwo_Contig1086.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=109bp
MGVEVETITPGDATNFPQQGNTVRVHYVGTLTDGTEFDSSRSRGRPFEFQ
LGMGMVIRAWDEGVAQMSKGQVAKLTCSPDYAYGARGYPPVIPPNSTLIF
EVELLDFS*
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mRNA from alignment at H-akashiwo_Contig1086:108777..109572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1086.6.1 ID=mRNA_H-akashiwo_Contig1086.6.1|Name=mRNA_H-akashiwo_Contig1086.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=796bp|location=Sequence derived from alignment at H-akashiwo_Contig1086:108777..109572+ (Heterosigma akashiwo CCMP452)
AAGAGGCAGTAAAAAACAAGCAAAAACAAATTGCAAAAAGGAAGAATGGG
CGTTGAAGTTGAAACCATCACTCCTGGGGATGCAACAAACTTCCCACAGC
AAGGAAATACTGTTCGTGTGCACTATGTCGGGACTCTGACCGATGGAACC
GAGTTTGACAGCAGCAGATCTCGTGGGAGACCTTTCGAGTTTCAGCTGGG
CATGGGAATGGTGATCAGAGCCTGGGACGAAGGAGTGGCTCAGATGAGCA
AGGGTCAGGTTGCCAAGCTCACTTGTAGCCCCGACTACGCTTACGGTGCT
CGTGGCTATCCTCCTGTCATCCCCCCCAACTCCACTCTCATTTTCGAGGT
TGAGCTTCTGGACTTCTCTTAAGATGCGCAGGTTTTATTTTCTGTCAATG
GCGCCTTTCAGCGACTCTTTGGGTGCTTCGGGGGCCCCCAGTGACTTTGT
TGTATGGGAAGTTGGAAAATGCTTGCTATGTGCAAGGGGTTGGTTTCCGG
GTGTCAATTATGTCTGTTTTTCATAGAGGTCTCAGCTAGGTGACTTGATT
GATTGAGATGCTATGGTTGTAAAGAAAAGGTAGCTGATTACTCCTTGCTT
TCTTTCATATTGGTATTTATCTTGAGGGGGGGATAATGCTGTAGTATAGA
AGCTGTGATCCAACCACTGTTTATGCTGCGCAATAAACATCAGAAAACCA
TTTGTTCAATTACTACTTCCATCTTCACGTTTTCTACTTGTGGAAGCTTC
CTTGTTATGGATGGTAAAAAAAAATTATTAAAACACGTTTGTTATC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1086:108777..109572+

>mRNA_H-akashiwo_Contig1086.6.1 ID=mRNA_H-akashiwo_Contig1086.6.1|Name=mRNA_H-akashiwo_Contig1086.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=327bp|location=Sequence derived from alignment at H-akashiwo_Contig1086:108777..109572+ (Heterosigma akashiwo CCMP452)
ATGGGCGTTGAAGTTGAAACCATCACTCCTGGGGATGCAACAAACTTCCC
ACAGCAAGGAAATACTGTTCGTGTGCACTATGTCGGGACTCTGACCGATG
GAACCGAGTTTGACAGCAGCAGATCTCGTGGGAGACCTTTCGAGTTTCAG
CTGGGCATGGGAATGGTGATCAGAGCCTGGGACGAAGGAGTGGCTCAGAT
GAGCAAGGGTCAGGTTGCCAAGCTCACTTGTAGCCCCGACTACGCTTACG
GTGCTCGTGGCTATCCTCCTGTCATCCCCCCCAACTCCACTCTCATTTTC
GAGGTTGAGCTTCTGGACTTCTCTTAA
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