mRNA_H-akashiwo_Contig1086.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1086.4.1
Unique NamemRNA_H-akashiwo_Contig1086.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: A0A836CGB6_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB6_9STRA)

HSP 1 Score: 263 bits (671), Expect = 3.550e-83
Identity = 143/293 (48.81%), Postives = 191/293 (65.19%), Query Frame = 1
Query:   13 RMGIFRFLAGGVAASIATTLTCPLEVIKIRLQSSNAIGLSPATVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPFLGNTPLTHLFSAVAAGLSSNTITNPIWVVKTRLQLQADGSKGQLAFKGWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRLKEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKY----QDVEHPGRGRREEGMAGLYRD-GDPPGPALHTQALMFLSYELI 876
            R  ++  +AGG+A SI++TLTCP+EV+K++LQSSN    +P  +AK I    G +GF +GL+  L+GI P+RA YFW+Y S+K VL P LG+  LTH+ +  AAG+ SNTITNPIW+VKTR+QL A+ +KGQ+A+ G+R A   I + EG+ GFY+GLSASYWG +E CIQF  YE +K+ L+  +A    A      D     L   QY L AAA K +A ++TYP+ V RTR+REQA  GVF+Y    Q +   G   +EEG  GLY   G      +   A+MFLSYELI
Sbjct:   28 RNQLYSLIAGGLAGSISSTLTCPIEVVKMQLQSSNGGSANPMVIAKDIARLEGVKGFFRGLSPTLLGIFPSRATYFWAYESTKRVLTPRLGDGTLTHIGAGFAAGMVSNTITNPIWMVKTRMQLLANAAKGQVAYTGYRHAVKSILKEEGVRGFYKGLSASYWGCSEGCIQFVAYEKLKRHLEARHAEHCRANGLPVTDR----LPPYQYFLGAAACKFLATVTTYPHEVVRTRLREQAKNGVFRYTGMWQSIMLIG---KEEGRKGLYAGMGTHVARVVPNTAIMFLSYELI 313          
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: W7THZ5_9STRA (Solute carrier family member 36 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THZ5_9STRA)

HSP 1 Score: 258 bits (658), Expect = 1.990e-80
Identity = 141/288 (48.96%), Postives = 192/288 (66.67%), Query Frame = 1
Query:   22 IFRFLAGGVAASIATTLTCPLEVIKIRLQSSNAIGLS-PATVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPFLGNTPLTHLFSAVAAGLSSNTITNPIWVVKTRLQLQADGSKGQLAFKGWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRLKEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKYQDVEHPGRG-RREEGMAGLYRD-GDPPGPALHTQALMFLSYELI 876
            ++   AGG A ++A+++TCP+EV+K +LQSS   G S P  VA++I++  G +GF +GL   LVGI+P RA YFW+YS+SK  L+P LG+  LTH+ S +AAG++ NTITNPIW+VKTR+QL ADG+ GQ+A+  +R+A   I R EGL+GF++GLSASYWG +E CIQF  YE +KK+L   N     AE  EA + D  P  T   +  AA +K VA  +TYP+ V RTR+REQA  G FKY+ +    R   +EEG  GLY   G      +   A+MFLS+EL+
Sbjct:   88 LYSLFAGGFAGAVASSITCPIEVVKTQLQSSRVGGGSNPFRVAREILAADGFKGFFRGLPPTLVGIIPARATYFWAYSTSKQALMPSLGDNTLTHILSGIAAGVTGNTITNPIWMVKTRMQLMADGAVGQMAYTSYRNAITRIYREEGLKGFWKGLSASYWGCSEGCIQFVVYEKLKKQLLVRNNDKRRAEGLEAKE-DLPPTFT---LAAAAFSKFVATTATYPHEVVRTRLREQARNGAFKYRSMWQSLRLIAKEEGRRGLYAGMGTHVARVVPNTAIMFLSFELV 371          
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: A0A835YUQ3_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ3_9STRA)

HSP 1 Score: 241 bits (616), Expect = 1.290e-75
Identity = 134/283 (47.35%), Postives = 186/283 (65.72%), Query Frame = 1
Query:   64 TTLTCPLEVIKIRLQSSNAIGLSPATVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPFLGNTPLTHLFSAVAAGLSSNTITNPIWVVKTRLQLQA--DGSKGQLAFKGWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRLKEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKY----QDVEHPGRGRREEGMAGLYRDGDPPGPALHTQ------ALMFLSYELI 876
            +T+TCP+EV+K +LQ+S+ +  +P  VA+ I +  GA+GF +GL+  L+GI P+RA YFW+Y + K  LVP LG+  +TH+ + ++AG ++NTIT+PIW+VKTR+QL A  D + GQ+A++G+R A   I R EG  GFY+GL+ASYWG +E CIQF  YE +K+ L+  +A  H    G    P +  L   QY L AAA+KL+A ++TYP+ V RTR+REQA  GVFKY    Q +   G   REEG+ GLY      G A H        A++FLSYELI
Sbjct:    5 STITCPIEVVKTQLQASSGVSHNPFAVARHIFNTQGAQGFFRGLSPTLLGIFPSRASYFWAYETMKSGLVPVLGDGTVTHIVAGLSAGATANTITSPIWMVKTRMQLLASIDAAHGQVAYRGYRHAIQTIYRQEGFRGFYKGLTASYWGCSEGCIQFVAYEKLKRHLEARHAE-HCRRNGL---PVTDRLPPHQYFLSAAASKLMATITTYPHEVVRTRLREQARNGVFKYTGMWQSLNLIG---REEGVRGLYA-----GMATHVARVVPNAAILFLSYELI 275          
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: A0A6V2SS18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2SS18_HETAK)

HSP 1 Score: 241 bits (614), Expect = 5.290e-74
Identity = 141/293 (48.12%), Postives = 190/293 (64.85%), Query Frame = 1
Query:   13 RMGIFRFLAGGVAASIATTLTCPLEVIKIRLQSSNAIGLSPA-TVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPFLGNTPLTHLFSAVAAGLSSNTITNPIWVVKTRLQLQA-DGSKGQLAFK-GWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRLKEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKYQDV-EHPGRGRREEGMAGLYRD-GDPPGPALHTQALMFLSYELI 876
            +  ++ F+AGG+A SI++T+TCP+EV+K +LQSS   G S    +A  I+   G  GF +GL   LVGI+P+RA YFW+Y ++K  L P LG++  TH  +A+AAG++ NTITNPIWV+KTR+QL A + SK   A++ G+R A   + + EG  GFY+GLSASYWG +E CIQF  YE +K  L+  + R  EA    A  P +  L   QY+L A AAKLVA+  TYP+ VARTRMRE A  GV KY+ + +  G   +EEG AGLY   G      +   A+MFLS+ELI
Sbjct:   69 KKSLYSFIAGGLAGSISSTITCPVEVVKTQLQSSAVAGGSNFFQIASNILKHEGPAGFFRGLPPTLVGIIPSRASYFWAYGAAKRGLAPRLGDSTPTHFLAAIAAGVTGNTITNPIWVLKTRMQLLAGEASKQTGAYQSGYRTAIQAVLKEEGWRGFYKGLSASYWGCSEGCIQFVAYERLKGALRTAHNREREA----AGLPPTETLPPLQYVLGAGAAKLVASALTYPHEVARTRMREAAVDGVTKYKGMWQSLGLIAKEEGRAGLYAGMGTHLARVVPNTAIMFLSFELI 357          
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: A0A1Z5JUA7_FISSO (Solute carrier family 25, member 33/36 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUA7_FISSO)

HSP 1 Score: 228 bits (580), Expect = 5.630e-69
Identity = 130/303 (42.90%), Postives = 184/303 (60.73%), Query Frame = 1
Query:    4 TPARMGIFRFLAGGVAASIATTLTCPLEVIKIRLQSSNAIGLS---PATVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPFLGN-TPLTHLFSAVAAGLSSNTITNPIWVVKTRLQLQADGSKGQLAFKGWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRL-KEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKYQDV-EHPGRGRREEGMAGLYRDGDPPGPALH------TQALMFLSYELI 876
            T  +M +F+  +GGVA +IA+ +T PL+VIK +LQSSN  G++   P  +A++I+ + G  GF +GL   LVGI+P+R+ YF++Y  SK  L P+    +P   L +   AG+  NT+TNPIW+V+TR+Q+ AD + GQ ++ G+ DA   I + EG+ GFYRG+ ASYWG  E  +QF  YE +K RL K HN           L PDS  L        AA AK++A++ TYP+ VARTRMREQA  G+FKY+ + +      +EEG  GLY      G  +H        ALMFL+YE++
Sbjct:   65 TATKMELFKIFSGGVAGTIASCITNPLDVIKTQLQSSNTAGIARRGPVEIARRIVQQDGLAGFFRGLPPTLVGIIPSRSAYFYAYQQSKHALGPYFPEGSPPNALLAGFFAGIVGNTLTNPIWMVRTRMQIFADAAAGQRSYNGYGDAIKTIFKEEGIGGFYRGIQASYWGCLEGSVQFIVYEQLKTRLLKRHNNN----RIAHGLSPDS-ELNKFTIFWTAALAKMIASVGTYPHEVARTRMREQARSGIFKYKGMWQTMAVIAKEEGRQGLYS-----GMGIHLVKVVPNSALMFLTYEVV 357          
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: A0A7S2RK71_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RK71_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.270e-67
Identity = 139/310 (44.84%), Postives = 187/310 (60.32%), Query Frame = 1
Query:    4 TPARMGIFRFLAGGVAASIATTLTCPLEVIKIRLQSSNA----------IGLSPATVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPF------LGNTPLTHLFSAVAAGLSSNTITNPIWVVKTRLQLQADGSKGQLAFKGWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRL-KEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKYQDV-EHPGRGRREEGMAGLYRD-GDPPGPALHTQALMFLSYELI 876
            T  +M I   L+GGVA +IA +LT PLEVIK +LQS++A           G  P  +AK+I+++ G  GF +G+   LVGI+P R++YF+SY  +K  L         +GN     L S  AAG++SNT+TNPIW+VKTR+QL AD S GQ A+  + D    I + EG+ GFY+G+SASYWG AE CIQF  YE IK RL K+ N +  E    + L P +  L    Y L AA  K +A+++TYP+ V RTR+REQA  GVFKY  + +  G   +EEG  GLY   G      +   A+MFL+YEL+
Sbjct:   82 TARKMKILNLLSGGVAGTIAGSLTNPLEVIKTQLQSTSASKASHGELAAAGGHPIDIAKRILAQDGIGGFWRGMKPTLVGIIPARSIYFYSYVQTKSALGKLNLPEGSVGNA----LISGFAAGIASNTLTNPIWMVKTRMQLLADNSVGQKAYANYGDVIQTIWKEEGVGGFYKGISASYWGCAEGCIQFILYEQIKTRLVKKQNEKREE----QGLPPTN-DLPKLSYFLSAAVCKGMASIATYPHEVVRTRLREQARGGVFKYHSMWQALGLIAKEEGRQGLYAGMGVHLAKVVPNSAIMFLTYELV 382          
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: A0A8J9T6G8_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T6G8_PHATR)

HSP 1 Score: 220 bits (560), Expect = 4.710e-67
Identity = 131/296 (44.26%), Postives = 182/296 (61.49%), Query Frame = 1
Query:   34 LAGGVAASIATTLTCPLEVIKIRLQSSNAIGLS-------PATVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPFLGN-TPLTHLFSAVAAGLSSNTITNPIWVVKTRLQLQADGSKGQLAFKGWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRLKEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKYQDV-EHPGRGRREEGMAGLYRDGDPPGPALH------TQALMFLSYELI 876
            L+GG+A +IA+ LT PLEVIK +LQSS+            P  +AK+IM + G  GF +GL   LVGI+P+R+ YF+SY   K  L P+L   +P   + +   AG++SNT+TNPIW+V+TR+QL AD + GQ A+ G+ DA   I R +GL+GFY+G+ ASYWG AE  +QF  YE  K RL     R++ A+  E   P +  L    Y   AAAAK+ A+++TYP+ VARTRMREQA  G++KY+ + +      +EEGM GLY      G  +H        A MFL+YE++
Sbjct:    2 LSGGLAGTIASCLTNPLEVIKTQLQSSSTAAGDMVAGRGHPVAIAKRIMEQDGVSGFFRGLPPTLVGIIPSRSAYFYSYQQIKKRLGPYLPEGSPPNAMLAGFMAGITSNTLTNPIWMVRTRMQLLADTTAGQRAYNGYGDAISTIWREDGLKGFYKGIQASYWGCAEGAVQFILYEQFKTRLL---GRLN-AQRAECGLPATEELPKMTYFWSAAAAKMCASIATYPHEVARTRMREQARGGIYKYKSMWQSLAVISQEEGMKGLYS-----GMGVHLLKVVPNSAFMFLTYEVV 288          
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: A0A7S4AJ65_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AJ65_9STRA)

HSP 1 Score: 221 bits (564), Expect = 3.670e-66
Identity = 129/295 (43.73%), Postives = 180/295 (61.02%), Query Frame = 1
Query:    4 TPARMGIFRFLAGGVAASIATTLTCPLEVIKIRLQSSNAIGLSPATVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVP-FLGNTPLTHLFSAVAAGLSSNTITNPIWVVKTRLQLQADGSKGQLAFKGWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRLKEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKYQDVEHPGRG--RREEGMAGLYRD-GDPPGPALHTQALMFLSYELI 876
            T  RM   + L+GG A ++A  +T PLEV+K +LQSSNA+  SP+ +AK+I+   G  GF +GL   LVGI+P+R+ YF++YS  K  L P F   +P   L +  +AG+  NT+TNPIW+V+TR+Q+  D + GQ  + G+RDA   I + EG+ GFY+G++ASYWG  E   QF  YE +K++L     R ++    + L P S  L    Y   AAA+K VA ++TYP+ VARTRMREQA  G+FKYQ+      G   +EEG   LY   G      +   ALMFL+YE +
Sbjct:  120 TARRMESLKLLSGGAAGTVAACITNPLEVVKTQLQSSNAVKSSPSAIAKKILDVDGIPGFWRGLPPTLVGIIPSRSAYFYAYSKMKSFLDPAFPEGSPPNALVAGFSAGIVGNTLTNPIWMVRTRMQILVDQAAGQRQYAGYRDAIQTIFQEEGVGGFYKGITASYWGCFEGATQFLIYEQLKQKLI---IRQNKKRFEQGLRP-SQELSKATYFWAAAASKGVAAVATYPHEVARTRMREQAQAGIFKYQNGMWGCLGVMAKEEGFKSLYSGMGVHLMKVIPNSALMFLTYETV 410          
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: B8BVH0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVH0_THAPS)

HSP 1 Score: 218 bits (554), Expect = 4.510e-66
Identity = 136/303 (44.88%), Postives = 184/303 (60.73%), Query Frame = 1
Query:   16 MGIFRFLAGGVAASIATTLTCPLEVIKIRLQSSNA-IG-LS-----PATVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPFLGNTPLTH-LFSAVAAGLSSNTITNPIWVVKTRLQLQADGSKGQLAFKGWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRL--KEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKYQDV-EHPGRGRREEGMAGLYRDGDPPGPALH------TQALMFLSYEL 873
            M  +  L+GG+A +IA+ +T PLEV+K +LQSS+A +G LS     P  +AK+IM   G  GF +GL   LVGI+P R+VYF+SY  +K  L P L    + + L S ++AG++ NT+TNPIWVVKTR+QL AD S GQ  + G+RDA   I   EG+ GFY+G++ASYWG  E   QF  YE IK ++  K++  R  E      L  D +P     Y   AA AK  A++ TYP+ VARTR+REQA  GVFKY+ + +  G   +EEG  GLY      G  +H        A+MFL+YE+
Sbjct:    1 MKAYNLLSGGIAGTIASCITNPLEVVKTQLQSSSAAVGDLSSAAGHPMEIAKKIMKTDGVAGFFRGLRPTLVGIIPARSVYFYSYEQTKRFLGPMLPEGSVGNALISGLSAGIAGNTLTNPIWVVKTRMQLLADSSAGQKVYTGYRDACRTIFAEEGIGGFYKGITASYWGCLEGAAQFMIYEQIKAKMLFKQNLQREEEG----LLPTDKLPKFV--YFFSAAIAKGTASIITYPHEVARTRLREQARNGVFKYKGMWQTIGVIAKEEGTKGLYS-----GMGVHLMKVVPNSAIMFLAYEM 292          
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Match: A0A7S0UKC2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKC2_9STRA)

HSP 1 Score: 218 bits (554), Expect = 5.070e-66
Identity = 129/300 (43.00%), Postives = 175/300 (58.33%), Query Frame = 1
Query:    4 TPARMGIFRFLAGGVAASIATTLTCPLEVIKIRLQSSNAIGLSPATVAKQIMSESGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPFLGN-TPLTHLFSAVAAGLSSNTITNPIWVVKTRLQLQADGSKGQLAFKGWRDAADWIARNEGLEGFYRGLSASYWGVAEACIQFTTYEFIKKRLKEHNARVHEAETGEALDPDSIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKYQ--DVEHPGRGRREEGMAGLYRDGDPPGPALH------TQALMFLSYELI 876
            T  RM   + L+GGVA ++A  +T PLEV+K +LQSSN+    P+ + K+I    G  GF +GL   L+GI+P+R+ YF++Y   K  L P L   +P   L +   AG+  NT+TNPIW+V+TR+Q+  D + GQ  + G+ DA   I R EG+ GFY+G+SASYWG AE  +QF  YE +K +L     R ++    E L P    L    Y   AAA+K VA ++TYP+ VARTRMREQA  GVFKYQ    +  G   +EEG   LY      G  +H        ALMFL+YE +
Sbjct:    8 TARRMESLKLLSGGVAGTVAACITNPLEVVKTQLQSSNSAKCHPSEIFKKIFDTDGIPGFWRGLPPTLMGIIPSRSAYFYAYQKMKTFLDPTLPEGSPPNALIAGFTAGIVGNTLTNPIWMVRTRMQILVDAAAGQRQYSGYGDAIKTIFREEGIGGFYKGISASYWGCAEGAMQFLIYEQLKSKLI---TRQNKKRREEGLRPTQ-ELSKATYFWAAAASKAVAAVATYPHEVARTRMREQARAGVFKYQLGMWDTLGVMAKEEGFKSLYS-----GMGVHLMKVVPNSALMFLTYECV 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1086.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGB6_9STRA3.550e-8348.81Mitochondrial carrier domain-containing protein n=... [more]
W7THZ5_9STRA1.990e-8048.96Solute carrier family member 36 n=2 Tax=Monodopsid... [more]
A0A835YUQ3_9STRA1.290e-7547.35Mitochondrial carrier domain-containing protein n=... [more]
A0A6V2SS18_HETAK5.290e-7448.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5JUA7_FISSO5.630e-6942.90Solute carrier family 25, member 33/36 n=2 Tax=Fis... [more]
A0A7S2RK71_9STRA2.270e-6744.84Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8J9T6G8_PHATR4.710e-6744.26Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S4AJ65_9STRA3.670e-6643.73Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
B8BVH0_THAPS4.510e-6644.88Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0UKC2_9STRA5.070e-6643.00Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1086contigH-akashiwo_Contig1086:107042..107917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr13538
PFAMsMito_carr
Model size876
Max annot lvl2836|Bacillariophyta
KEGG koko:K15116
KEGG TC2.A.29.10.4
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.22e-68
EggNOG OGsCOG4266@1|root,KOG0757@2759|Eukaryota,2XA5J@2836|Bacillariophyta
Ec32 ortholog descriptionmitochondrial pyrimidine nucleotide transporter
Ec32 orthologEc-19_001780.1
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
Cds size861
COG categoryC
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.9068556-CDS-H-akashiwo_Contig1086:107041..1079021681387072.9068556-CDS-H-akashiwo_Contig1086:107041..107902Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1086 107042..107902 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.9178295-UTR-H-akashiwo_Contig1086:107902..1079171681387072.9178295-UTR-H-akashiwo_Contig1086:107902..107917Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1086 107903..107917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1086.4.1prot_H-akashiwo_Contig1086.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1086 107042..107902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1086.4.1

>prot_H-akashiwo_Contig1086.4.1 ID=prot_H-akashiwo_Contig1086.4.1|Name=mRNA_H-akashiwo_Contig1086.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=287bp
MGIFRFLAGGVAASIATTLTCPLEVIKIRLQSSNAIGLSPATVAKQIMSE
SGAEGFLKGLNAFLVGIVPNRAVYFWSYSSSKDVLVPFLGNTPLTHLFSA
VAAGLSSNTITNPIWVVKTRLQLQADGSKGQLAFKGWRDAADWIARNEGL
EGFYRGLSASYWGVAEACIQFTTYEFIKKRLKEHNARVHEAETGEALDPD
SIPLQTGQYMLVAAAAKLVANLSTYPYMVARTRMREQATRGVFKYQDVEH
PGRGRREEGMAGLYRDGDPPGPALHTQALMFLSYELI
back to top

mRNA from alignment at H-akashiwo_Contig1086:107042..107917-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1086.4.1 ID=mRNA_H-akashiwo_Contig1086.4.1|Name=mRNA_H-akashiwo_Contig1086.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=876bp|location=Sequence derived from alignment at H-akashiwo_Contig1086:107042..107917- (Heterosigma akashiwo CCMP452)
TTTACACCAGCACGAATGGGAATTTTCAGGTTCTTAGCTGGGGGAGTGGC TGCTTCGATTGCCACCACCTTGACTTGCCCACTCGAGGTTATAAAAATCC GTTTGCAGTCAAGTAATGCTATTGGTTTGAGCCCAGCTACAGTTGCGAAG CAAATCATGAGCGAGAGTGGTGCCGAAGGTTTTTTAAAAGGTTTGAATGC CTTTCTAGTGGGAATAGTTCCAAACAGGGCAGTGTACTTCTGGTCATACT CTAGTTCAAAGGATGTGCTGGTGCCATTCCTCGGCAACACGCCTCTCACC CATCTGTTTTCTGCTGTTGCTGCTGGACTTTCCAGCAACACCATCACCAA CCCGATATGGGTTGTCAAGACTAGACTTCAGCTGCAAGCTGATGGCTCAA AGGGCCAGCTTGCATTCAAAGGTTGGCGAGACGCGGCGGACTGGATCGCC AGGAATGAAGGCTTGGAGGGATTTTACAGAGGGCTGAGTGCCTCATACTG GGGTGTGGCTGAGGCCTGCATTCAGTTCACAACTTATGAGTTCATTAAGA AGAGACTGAAGGAGCATAATGCGCGGGTACACGAGGCGGAGACTGGCGAG GCACTTGACCCGGATTCGATTCCTCTCCAGACTGGCCAGTACATGCTCGT GGCAGCGGCCGCGAAGCTGGTCGCCAACCTGTCCACATACCCTTACATGG TGGCGCGGACACGCATGCGCGAGCAGGCCACCCGCGGGGTGTTCAAGTAC CAGGATGTGGAACACCCTGGGCGTGGTCGCCGGGAGGAAGGCATGGCCGG GCTCTACCGCGATGGGGATCCACCTGGCCCGGCGCTGCACACACAGGCGC TGATGTTCCTCAGCTACGAGCTCATC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1086:107042..107917-

>mRNA_H-akashiwo_Contig1086.4.1 ID=mRNA_H-akashiwo_Contig1086.4.1|Name=mRNA_H-akashiwo_Contig1086.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=861bp|location=Sequence derived from alignment at H-akashiwo_Contig1086:107042..107917- (Heterosigma akashiwo CCMP452)
ATGGGAATTTTCAGGTTCTTAGCTGGGGGAGTGGCTGCTTCGATTGCCAC
CACCTTGACTTGCCCACTCGAGGTTATAAAAATCCGTTTGCAGTCAAGTA
ATGCTATTGGTTTGAGCCCAGCTACAGTTGCGAAGCAAATCATGAGCGAG
AGTGGTGCCGAAGGTTTTTTAAAAGGTTTGAATGCCTTTCTAGTGGGAAT
AGTTCCAAACAGGGCAGTGTACTTCTGGTCATACTCTAGTTCAAAGGATG
TGCTGGTGCCATTCCTCGGCAACACGCCTCTCACCCATCTGTTTTCTGCT
GTTGCTGCTGGACTTTCCAGCAACACCATCACCAACCCGATATGGGTTGT
CAAGACTAGACTTCAGCTGCAAGCTGATGGCTCAAAGGGCCAGCTTGCAT
TCAAAGGTTGGCGAGACGCGGCGGACTGGATCGCCAGGAATGAAGGCTTG
GAGGGATTTTACAGAGGGCTGAGTGCCTCATACTGGGGTGTGGCTGAGGC
CTGCATTCAGTTCACAACTTATGAGTTCATTAAGAAGAGACTGAAGGAGC
ATAATGCGCGGGTACACGAGGCGGAGACTGGCGAGGCACTTGACCCGGAT
TCGATTCCTCTCCAGACTGGCCAGTACATGCTCGTGGCAGCGGCCGCGAA
GCTGGTCGCCAACCTGTCCACATACCCTTACATGGTGGCGCGGACACGCA
TGCGCGAGCAGGCCACCCGCGGGGTGTTCAAGTACCAGGATGTGGAACAC
CCTGGGCGTGGTCGCCGGGAGGAAGGCATGGCCGGGCTCTACCGCGATGG
GGATCCACCTGGCCCGGCGCTGCACACACAGGCGCTGATGTTCCTCAGCT
ACGAGCTCATC
back to top