mRNA_H-akashiwo_Contig1086.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1086.1.1
Unique NamemRNA_H-akashiwo_Contig1086.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1086.1.1 vs. uniprot
Match: A0A6V2U0S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2U0S1_HETAK)

HSP 1 Score: 137 bits (345), Expect = 5.030e-38
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 MPLHFRSILIKVFFLVCAFLLNKSNSFSGFDGKAATLPSTGMNMASTEGSTFPVNEAENEKIFVVTGSTD 210
            MPLHFRSILIKVFFLVCAFLLNKSNSFSGFDGKAATLPSTGMNMASTEGSTFPVNEAENEKIFVVTGSTD
Sbjct:    1 MPLHFRSILIKVFFLVCAFLLNKSNSFSGFDGKAATLPSTGMNMASTEGSTFPVNEAENEKIFVVTGSTD 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1086.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V2U0S1_HETAK5.030e-38100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1086contigH-akashiwo_Contig1086:39550..40084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size211
Hectar predicted targeting categorysignal peptide
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.8002915-CDS-H-akashiwo_Contig1086:39549..396101681387072.8002915-CDS-H-akashiwo_Contig1086:39549..39610Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1086 39550..39610 -
1681387072.8103223-CDS-H-akashiwo_Contig1086:39935..400841681387072.8103223-CDS-H-akashiwo_Contig1086:39935..40084Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1086 39936..40084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1086.1.1prot_H-akashiwo_Contig1086.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1086 39550..40084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1086.1.1

>prot_H-akashiwo_Contig1086.1.1 ID=prot_H-akashiwo_Contig1086.1.1|Name=mRNA_H-akashiwo_Contig1086.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=70bp
MPLHFRSILIKVFFLVCAFLLNKSNSFSGFDGKAATLPSTGMNMASTEGS
TFPVNEAENEKIFVVTGSTD
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mRNA from alignment at H-akashiwo_Contig1086:39550..40084-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1086.1.1 ID=mRNA_H-akashiwo_Contig1086.1.1|Name=mRNA_H-akashiwo_Contig1086.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=535bp|location=Sequence derived from alignment at H-akashiwo_Contig1086:39550..40084- (Heterosigma akashiwo CCMP452)
ATGCCCCTTCATTTTAGGAGCATTTTGATAAAAGTTTTTTTTCTCGTCTG
CGCATTTTTACTCAATAAGTCCAACTCATTCAGTGGTTTTGACGGCAAGG
CAGCAACATTGCCTTCTACTGGCATGAATATGGCATCAACTGAAGGCAGG
TCTGATCAATCAAACCCCAGTGGCATATATCAAGTTATGTTGGCCAATAA
ATCATACATTTGAACCACGCTTGCCACTTCTCATCGGCGGCTATCGCATG
CTTTCTTTCAATATTACTATAGCTTTATTATTTTTTACCAACAAATTGTA
TTACTAACAGTCGGTTTAGTGTGTGCATGCGTGTGCAGCATACACATATA
CGCTTGTTTGGTGTATGTGGAGAAATATACAGAAATAATAAGCGCCCTTC
TTATTGCACAACATTTTGGTTTCCAGTTCCACTGTTCATACCACCCCTAC
CTCAATTCTCTGGTTACAATTTAGCACCTTTCCAGTCAATGAAGCGGAGA
ACGAAAAGATCTTTGTTGTAACGGGTTCAACCGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1086:39550..40084-

>mRNA_H-akashiwo_Contig1086.1.1 ID=mRNA_H-akashiwo_Contig1086.1.1|Name=mRNA_H-akashiwo_Contig1086.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig1086:39550..40084- (Heterosigma akashiwo CCMP452)
ATGCCCCTTCATTTTAGGAGCATTTTGATAAAAGTTTTTTTTCTCGTCTG
CGCATTTTTACTCAATAAGTCCAACTCATTCAGTGGTTTTGACGGCAAGG
CAGCAACATTGCCTTCTACTGGCATGAATATGGCATCAACTGAAGGCAGC
ACCTTTCCAGTCAATGAAGCGGAGAACGAAAAGATCTTTGTTGTAACGGG
TTCAACCGAC
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