mRNA_H-akashiwo_Contig1085.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1085.4.1
Unique NamemRNA_H-akashiwo_Contig1085.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A1C9C5F7_HAV01 (Uncharacterized protein n=1 Tax=Heterosigma akashiwo virus 01 TaxID=97195 RepID=A0A1C9C5F7_HAV01)

HSP 1 Score: 110 bits (275), Expect = 2.320e-24
Identity = 65/169 (38.46%), Postives = 106/169 (62.72%), Query Frame = 1
Query:  364 ITQHYKCIHTPRAAQKHRRKEHEIELLLLEHG---INHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNYSVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQA----KLIETITNIEFGPDGTLSVIYINYD 849
            +++H K +H+    +  + +E  I  +L EH    I + +EH + Y CIND  NN SR+DF ++ +D + K GII LE+DEY H +  Y  +CD +RM++IHESI++ GN LP++FIR+NP+ +     TVK   +++++    +LI+ I NI+F  +  L + Y+ YD
Sbjct:  183 LSKHLK-LHSDEHVKYRKNEERRIRNVLNEHPDLYIFYNQEHVVDYKCINDYDNNCSRVDFYVEKEDFDWKRGIIFLEIDEYAHRH--YPDTCDTTRMSKIHESIIIGGNELPVIFIRYNPNFFYYYTNTVKRKNEVRKSWREEQLIKYIRNIKF--EKPLGIKYMFYD 346          
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A1Y1IMS1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMS1_KLENI)

HSP 1 Score: 110 bits (274), Expect = 2.000e-23
Identity = 62/157 (39.49%), Postives = 99/157 (63.06%), Query Frame = 1
Query:  388 HTPRAAQKHRRKEHEIELLLLEHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNYSVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQAKLIETITNIEFGPDGTLSVIYINYDTTD 858
            HT    Q+ +R+E  I  LL + G+  KREH +T++C+     +++RIDFI+D K   GK  II++EVDEYQH    Y V+CD++RM QI+E+  +EGN+LP+  IR+NP +++++      T+++++A+L+E I          L V Y+ YD  D
Sbjct:  473 HTKEGQQRRKREEERIAKLLTKAGLPFKREHHVTFDCLG---GSFARIDFILDHK---GK--IIVIEVDEYQH--EGYGVACDVARMLQIYEAWAIEGNSLPVHIIRYNPHAFQIDGKRAAVTRKIREARLLEAIDEAAEMESEGLYVQYMYYDLKD 619          
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A1Y1ISL5_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ISL5_KLENI)

HSP 1 Score: 106 bits (265), Expect = 1.640e-22
Identity = 59/147 (40.14%), Postives = 97/147 (65.99%), Query Frame = 1
Query:  352 LKGHITQHYKCIHTPRAAQKHRRKEHEIELLLLEHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNYSVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQAKLIETI 792
            LK H+  +    HT +  Q+ +R+E  I  LL   G+  KREH +T++C+     +++RIDFI+D K   GK  II++EVDEYQH    Y V+CD++RM QI+E+  +EGN+LP+  IR+NP +++++      T+++++A+L+E I
Sbjct:  203 LKTHVFYY----HTEKGQQRRKREEERIAKLLTTAGLPFKREHHVTFDCLG---GSFARIDFILDHK---GK--IIVIEVDEYQH--EGYGVACDVARMLQIYEAWAIEGNSLPVHIIRYNPHTFQIDGKRAAVTRKIREARLLEAI 335          
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A2J7ZLC9_9CHLO (Zinc finger protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZLC9_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 5.190e-22
Identity = 59/159 (37.11%), Postives = 97/159 (61.01%), Query Frame = 1
Query:  385 IHTPRAAQKHRRKEHEIELLLLEHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNY-SVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQAKLIETITNIE---FGPDGTLSVIYINYD 849
            +H+P    + +++E  +   L   GI +KREH I + CI D+   ++R+DF+I     +G+  +I LEVDE QH + +Y S SCD+ RM++I ES+   GNTLP+VF+R+NP+ + VN   VK+ K  ++++L+  + N     F  D  + + Y+ YD
Sbjct:  181 LHSPEGQARQKKQEQRVARALDRAGILYKREHQIDFRCIGDHAGFWARVDFVIVL---HGR--VIFLEVDEEQHKFGSYGSASCDMKRMSRILESLADGGNTLPLVFLRYNPNVFTVNGKVVKKLKAARESELVSLLENPASEVFSCDRPIVIQYLYYD 334          
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A1Y1IQ52_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQ52_KLENI)

HSP 1 Score: 103 bits (257), Expect = 1.900e-21
Identity = 59/160 (36.88%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  370 QHYKCIHTPRAAQKHRRKEHEIELLLLEHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNYSVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQAKLIETITNIEFGPDGTLSVIYINYD 849
            +H++  HT    Q+ +R+E  +  LL    I+ KREH++++ CI D    ++R+DFII     NGK  +I+LEVDEYQH    Y V+CD+SRM +++ + +LEGNTLP+ F+R+NP  ++V+    K  + +++ +L+  I          + V Y+ YD
Sbjct:  194 KHFRDYHTAEGQQRRKREEERVAKLLEGASIDFKREHAVSFRCILDT---FARVDFIIIL---NGK--VIVLEVDEYQH--DGYGVACDVSRMIKLYGAWLLEGNTLPVRFLRYNPHLFRVDGKQKKLKRVVREDRLLRAIREASEAEGDGMRVWYLYYD 343          
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A1Y1IS06_KLENI (Zinc finger-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IS06_KLENI)

HSP 1 Score: 99.8 bits (247), Expect = 7.130e-21
Identity = 58/154 (37.66%), Postives = 91/154 (59.09%), Query Frame = 1
Query:  388 HTPRAAQKHRRKEHEIELLLLEHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNYSVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQAKLIETITNIEFGPDGTLSVIYINYD 849
            HT    QK +R+E  I  LL    I+ KREH + + C+      ++R DF+I     NGK  +++LEVDEYQH   +Y V+CD++RM +I+E+ +LEGN LP+ F+R+NP++Y V+    K  +  ++ +L+E I          + V Y+ YD
Sbjct:  129 HTTEGKQKRKREEVRIAKLLEGSSIDFKREHYVNFGCLQ---GTFARADFVII---QNGK--VVVLEVDEYQH--ESYGVACDVARMAKIYEAWLLEGNGLPVRFLRYNPNAYHVDGKKQKVKRAAREERLLEAIREASEADGDGMQVRYMYYD 272          
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A2J7ZHX8_9CHLO (Zinc finger protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZHX8_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 1.010e-20
Identity = 59/156 (37.82%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  394 PRAAQKHRRKEHEIELLLLEHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNY-SVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQAKLI---ETITNIEFGPDGTLSVIYINYD 849
            P    + +++E  +   L   GI +KREH I + CI  +   ++R+DF+I     +G+  +I LEVDE QH + +Y S SCD+ RM++I ES+   GNTLP+VF+R+NP+ ++V+   VK+ K M++A+L+   E  T+  F     L + Y+ YD
Sbjct:  143 PEGQARQKKQEQRVARALDRAGIPYKREHQIDFRCIGGDAGFWARVDFVIVL---HGR--VIFLEVDEGQHKFGSYGSASCDMKRMSRIQESLFDGGNTLPLVFLRYNPNVFRVDGKVVKKLKVMREAELVSLLENSTSDAFSCARPLVIQYMYYD 293          
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A2J7ZMQ5_9CHLO (Zinc finger protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZMQ5_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 1.070e-20
Identity = 59/159 (37.11%), Postives = 95/159 (59.75%), Query Frame = 1
Query:  385 IHTPRAAQKHRRKEHEIELLLLEHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNY-SVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQAKLIETITNIE---FGPDGTLSVIYINYD 849
            +HT     + +++E  +   L + GI +KREH I + CI  +   ++R+DF+I     +G+  +I LEVDE QH + +Y S SCD+ RM++I ES+   GNTLP+VF+R+NP+ + V+   VK+ K  ++A L+  + N     F  D  L + Y+ YD
Sbjct:  122 LHTQEGQARQKKQEQRVARALDKAGIPYKREHQIDFRCIGGDAGFWARVDFVIVL---HGR--VIFLEVDEGQHKFGSYGSASCDMKRMSRILESLADGGNTLPLVFLRYNPNVFTVDGQVVKKLKAAREAVLVSVLENPASEVFSCDRPLVIQYLYYD 275          
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A2J7ZQ62_9CHLO (Zinc finger protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZQ62_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 3.460e-20
Identity = 58/158 (36.71%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  388 HTPRAAQKHRRKEHEIELLLLEHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNY-SVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQAKLIETITNIE---FGPDGTLSVIYINYD 849
            HT     + +++E  +   L + GI +KREH I + C+ D+    +R+DF+I     +G+  +I LEVDE QH + +Y S SCD+ RM++I ES+   GNTLP+VF+R+NP+ ++V+   VK+ K  ++++L+  + N     F  D  L + Y+ YD
Sbjct:  183 HTQEGQARQKKQEQRVSRALDKAGIPYKREHQIDFRCVGDDAGFMARVDFVILL---HGR--VIFLEVDEGQHKFGSYGSASCDMKRMSRILESLAQGGNTLPLVFLRYNPNVFRVDGKVVKKLKVTRESELVSLLENPASDVFLCDRPLVIQYMYYD 335          
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Match: A0A2J7ZPB9_9CHLO (Zinc finger protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZPB9_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 7.990e-20
Identity = 58/159 (36.48%), Postives = 96/159 (60.38%), Query Frame = 1
Query:  385 IHTPRAAQKHRRKEHEIELLLLEHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEYQHTYSNY-SVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVKETKQMKQAKLIETI---TNIEFGPDGTLSVIYINYD 849
            +H+P    + +++E  +   L   GI +KREH I + CI  +   ++R+DF+I     +G+  +I LEVDE QH + +Y S SCD+ RM++I ES+   GNTLP+VF+R+NP+ + VN   V++ K  ++A+L+  +   T+  F     L + Y+ YD
Sbjct:  276 LHSPEGQARQKKQEQRLARALDRAGIPYKREHQIDFRCIGGDAGFWARVDFVIVL---HGR--VIFLEVDEEQHKFGSYGSASCDMKRMSRILESLADGGNTLPLVFLRYNPNVFTVNGKVVRKLKAAREAELVSLLGNSTSDAFSCARPLVIQYMYYD 429          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1085.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1C9C5F7_HAV012.320e-2438.46Uncharacterized protein n=1 Tax=Heterosigma akashi... [more]
A0A1Y1IMS1_KLENI2.000e-2339.49Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A1Y1ISL5_KLENI1.640e-2240.14Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A2J7ZLC9_9CHLO5.190e-2237.11Zinc finger protein n=1 Tax=Tetrabaena socialis Ta... [more]
A0A1Y1IQ52_KLENI1.900e-2136.88Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A1Y1IS06_KLENI7.130e-2137.66Zinc finger-containing protein n=1 Tax=Klebsormidi... [more]
A0A2J7ZHX8_9CHLO1.010e-2037.82Zinc finger protein n=1 Tax=Tetrabaena socialis Ta... [more]
A0A2J7ZMQ5_9CHLO1.070e-2037.11Zinc finger protein n=1 Tax=Tetrabaena socialis Ta... [more]
A0A2J7ZQ62_9CHLO3.460e-2036.71Zinc finger protein n=1 Tax=Tetrabaena socialis Ta... [more]
A0A2J7ZPB9_9CHLO7.990e-2036.48Zinc finger protein n=1 Tax=Tetrabaena socialis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1085contigH-akashiwo_Contig1085:172799..173728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size858
Hectar predicted targeting categoryother localisation
Exons2
Cds size858
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.7167518-CDS-H-akashiwo_Contig1085:172798..1731521681387072.7167518-CDS-H-akashiwo_Contig1085:172798..173152Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1085 172799..173152 +
1681387072.724763-CDS-H-akashiwo_Contig1085:173224..1737281681387072.724763-CDS-H-akashiwo_Contig1085:173224..173728Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1085 173225..173728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1085.4.1prot_H-akashiwo_Contig1085.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1085 172799..173728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1085.4.1

>prot_H-akashiwo_Contig1085.4.1 ID=prot_H-akashiwo_Contig1085.4.1|Name=mRNA_H-akashiwo_Contig1085.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=286bp
YPCEFENCTYKAKQKTDLKQHLANIHDNDVTYFPCEIENCTYKTKWKSTL
KRHLADIHDIGVTYFPCEIENCSHKAKRKSSLKQHLAYIHDIGVTYFPCE
IENCTYRAKQKSSLKQHLKGHITQHYKCIHTPRAAQKHRRKEHEIELLLL
EHGINHKREHSITYNCINDNTNNYSRIDFIIDFKDTNGKTGIIMLEVDEY
QHTYSNYSVSCDISRMTQIHESIMLEGNTLPIVFIRFNPDSYKVNNITVK
ETKQMKQAKLIETITNIEFGPDGTLSVIYINYDTTD
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mRNA from alignment at H-akashiwo_Contig1085:172799..173728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1085.4.1 ID=mRNA_H-akashiwo_Contig1085.4.1|Name=mRNA_H-akashiwo_Contig1085.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=930bp|location=Sequence derived from alignment at H-akashiwo_Contig1085:172799..173728+ (Heterosigma akashiwo CCMP452)
TACCCATGCGAATTTGAGAATTGTACTTATAAGGCAAAACAGAAAACAGA TTTAAAACAACATTTGGCGAATATACATGACAATGATGTTACATATTTCC CATGCGAAATTGAGAATTGTACTTATAAGACAAAGTGGAAATCAACATTG AAACGACATTTGGCGGATATTCATGACATTGGTGTTACGTATTTCCCATG CGAAATTGAGAATTGTTCTCATAAAGCAAAACGGAAATCATCATTGAAAC AACATTTGGCATATATTCATGACATTGGTGTTACGTATTTCCCATGCGAA ATTGAGAATTGTACTTATAGGGCAAAGCAGAAATCATCATTGAAACAACA TCTAGTGGATATCCACGATATAGGCACTATCTGGCATACATGCCCTGACA ATAACTGCTCATACAAATCGAAACAGAAAGGTCACATAACACAACACTAC AAATGCATACATACCCCACGTGCGGCCCAAAAGCACCGGCGCAAAGAACA CGAAATAGAACTCCTGTTACTAGAACATGGTATAAACCACAAGCGAGAAC ATAGCATCACGTATAACTGCATAAATGATAACACAAACAACTATTCCCGC ATTGACTTCATCATAGATTTCAAAGATACTAACGGCAAGACAGGCATCAT TATGCTAGAAGTCGATGAATATCAACACACGTACAGCAATTATTCCGTCT CCTGTGATATAAGTCGCATGACGCAAATTCATGAGAGCATCATGTTAGAA GGTAACACTTTACCCATCGTCTTCATACGTTTCAATCCAGATAGTTACAA AGTTAATAACATCACTGTGAAAGAAACCAAGCAAATGAAGCAAGCCAAAC TAATCGAAACCATAACTAACATCGAGTTCGGTCCTGACGGCACTTTAAGC GTAATCTATATCAATTACGATACAACAGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1085:172799..173728+

>mRNA_H-akashiwo_Contig1085.4.1 ID=mRNA_H-akashiwo_Contig1085.4.1|Name=mRNA_H-akashiwo_Contig1085.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=858bp|location=Sequence derived from alignment at H-akashiwo_Contig1085:172799..173728+ (Heterosigma akashiwo CCMP452)
TACCCATGCGAATTTGAGAATTGTACTTATAAGGCAAAACAGAAAACAGA
TTTAAAACAACATTTGGCGAATATACATGACAATGATGTTACATATTTCC
CATGCGAAATTGAGAATTGTACTTATAAGACAAAGTGGAAATCAACATTG
AAACGACATTTGGCGGATATTCATGACATTGGTGTTACGTATTTCCCATG
CGAAATTGAGAATTGTTCTCATAAAGCAAAACGGAAATCATCATTGAAAC
AACATTTGGCATATATTCATGACATTGGTGTTACGTATTTCCCATGCGAA
ATTGAGAATTGTACTTATAGGGCAAAGCAGAAATCATCATTGAAACAACA
TCTAAAAGGTCACATAACACAACACTACAAATGCATACATACCCCACGTG
CGGCCCAAAAGCACCGGCGCAAAGAACACGAAATAGAACTCCTGTTACTA
GAACATGGTATAAACCACAAGCGAGAACATAGCATCACGTATAACTGCAT
AAATGATAACACAAACAACTATTCCCGCATTGACTTCATCATAGATTTCA
AAGATACTAACGGCAAGACAGGCATCATTATGCTAGAAGTCGATGAATAT
CAACACACGTACAGCAATTATTCCGTCTCCTGTGATATAAGTCGCATGAC
GCAAATTCATGAGAGCATCATGTTAGAAGGTAACACTTTACCCATCGTCT
TCATACGTTTCAATCCAGATAGTTACAAAGTTAATAACATCACTGTGAAA
GAAACCAAGCAAATGAAGCAAGCCAAACTAATCGAAACCATAACTAACAT
CGAGTTCGGTCCTGACGGCACTTTAAGCGTAATCTATATCAATTACGATA
CAACAGAC
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