mRNA_H-akashiwo_Contig1085.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1085.1.1
Unique NamemRNA_H-akashiwo_Contig1085.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A151IS59_9HYME (GIY-YIG domain-containing protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151IS59_9HYME)

HSP 1 Score: 93.6 bits (231), Expect = 7.970e-21
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 1
Query:   10 FVVPFIKELQPALRALCTRLSLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTCNIQKGRD 471
            F +P+ + +    R +   L + L +     L   + P++     +QQKNV+YKI+CK C+ SYVGQTKRTL TRVKEH   +  +  +L V         L  H L+   +H FD+D+ +V+  E    KR   E ++I +  N+ N+Q   D
Sbjct:   47 FTIPYTEGIDGKFREVVRDLDVNLSFYSLNKLNCFIGPQKDRLSNLQQKNVIYKINCKDCDASYVGQTKRTLKTRVKEHKNDIRKSNGNLSV---------LSEHRLE--LNHEFDWDDVKVVDSERWLYKRRISEMLHIKLQNNSLNLQSDTD 189          
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A151JBS6_9HYME (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151JBS6_9HYME)

HSP 1 Score: 92.4 bits (228), Expect = 2.130e-20
Identity = 52/150 (34.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:   10 FVVPFIKELQPALRALCTRLSLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTCNIQ 459
            FV+P++ ++    + +    + KL Y     L +L+   +      ++KNVVYKISCK CE SYVGQTKR L TR+ EH   ++         R   N + +  H ++  F H FD++N  VL  E    KRL  E ++I M +N+ N++
Sbjct:   46 FVLPYVPKISDEFKRISKTFNTKLAYTSLNKLNSLIKGHKDILPKEKRKNVVYKISCKSCEASYVGQTKRKLKTRLAEHRNHIN---------RNSNNQSVITEHRIE--FDHDFDWENVAVLDEERSLNKRLISECLHILMQKNSLNLR 184          
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A195C461_9HYME (GIY-YIG domain-containing protein n=2 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A195C461_9HYME)

HSP 1 Score: 88.6 bits (218), Expect = 4.130e-19
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  103 LGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTCNIQKGRD 471
            L N++   + +T  MQ+ NVVYK+ C  C+ SYVGQTKR L TR+KEH  ++ +  T + V         L  HC  +   H FD+DN  ++  E+H+ KRL  E ++I    N  N QK  +
Sbjct:   52 LNNIIKVHKDNTEKMQRNNVVYKVECNNCDSSYVGQTKRKLITRIKEHKYNIRSNPTRVTV---------LSEHCNQS--GHSFDWDNIRIMDIESHYNKRLISEMLFIKEQNNGINAQKDTE 163          
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A151JPB2_9HYME (GIY-YIG domain-containing protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151JPB2_9HYME)

HSP 1 Score: 90.5 bits (223), Expect = 4.590e-19
Identity = 50/151 (33.11%), Postives = 78/151 (51.66%), Query Frame = 1
Query:    7 HFVVPFIKELQPALRALCTRLSLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLD--TDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTCN 453
            +F +P++K +  +   + T    KL +     L + +   +     +  +N+VYKISCK C+ SYVGQTKR L+TR+KEH   +             +N+TG P+   D    F H F +D A++L  E  +GKRL  E +YI   ++  N
Sbjct:  113 YFTIPYVKSISESFLPISTMFHCKLAFTIPNTLKSFIRRGKDKLEFLSNQNIVYKISCKNCDASYVGQTKRKLSTRLKEHQSDI-------------RNNTGSPSVITDHRVTFDHNFKWDEAKILDNEASYGKRLVSEMIYIKRQKHGIN 250          
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A151JCH7_9HYME (GIY-YIG domain-containing protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151JCH7_9HYME)

HSP 1 Score: 89.7 bits (221), Expect = 1.070e-18
Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = 1
Query:   10 FVVPFIKELQPALRALCTRLSLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTCNIQKGRD 471
            F + + + +    R +   L + L +     L   + P++     +QQKNV+YKI+CK C+ SYVGQTKRTL TRVKEH   +  +  +L V         L  H L+   +H FD+D+ +V+  E    KR   E ++I +  N+ N+Q   D
Sbjct:  127 FTILYTEGIDGKFREVVRDLDVNLSFYSLNKLNCFIGPQKDRLSNLQQKNVIYKINCKDCDASYVGQTKRTLKTRVKEHKNDIRKSNGNLSV---------LSEHRLE--LNHEFDWDDVKVVDSERWLYKRRISEMLHIKLQNNSLNLQSDTD 269          
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A151IWB9_9HYME (GIY-YIG domain-containing protein (Fragment) n=2 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151IWB9_9HYME)

HSP 1 Score: 86.3 bits (212), Expect = 1.390e-18
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  103 LGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTCNIQKGRD 471
            L   + P++     +Q+KNV+YKI+CK C+ SYVGQTKRTL TRVKEH   +  +  +L V         L  H L+   +H FD+D+ +V+  E    KR   E ++I +  N+ N+Q   D
Sbjct:   21 LNCFIGPQKDRLSNLQKKNVIYKINCKDCDASYVGQTKRTLKTRVKEHKNDIRKSNGNLSV---------LSEHRLE--LNHEFDWDDVKVVDSERWLYKRRISEMLHIKLQNNSLNLQSDTD 132          
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A151JBN8_9HYME (GIY-YIG domain-containing protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151JBN8_9HYME)

HSP 1 Score: 88.6 bits (218), Expect = 2.050e-18
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 1
Query:    7 HFVVPFIKELQPALRALCTRLSLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYI 429
            +F VP+IK +    R++  + + K+ YK    L +++   +     M+Q NVVYKI+C  CE SYVGQTKR + TR+KEH  S   + T   V         +  H +   F H+F++DN E+L  E  + KR   E +YI
Sbjct:  130 YFTVPYIKNISEKFRSITEKNNFKIAYKPMNKLNSIIKTSKDKLDIMEQCNVVYKINCLNCESSYVGQTKRKIKTRLKEHKSSTSNSNTVHNV---------VAQHQIK--FDHKFNWDNIEILDTEPFFQKRFTSEMIYI 259          
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A151IS26_9HYME (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151IS26_9HYME)

HSP 1 Score: 86.3 bits (212), Expect = 2.160e-18
Identity = 48/150 (32.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   10 FVVPFIKELQPALRALCTRLSLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTCNIQ 459
            FV+P++ ++    + +    + KL +     L +L+   +      ++KNV+YKISCK C+ SYVGQTKR L TR+ EH   ++         R   N + +  H ++  F+H FD +N  +L  E    KRL  E ++I M  N+ N++
Sbjct:    8 FVLPYVPKILDEFKRISKTFNTKLAFTSLNKLNSLIKGHKDILPREKRKNVIYKISCKYCDASYVGQTKRKLKTRLDEHRNHIN---------RNSNNQSVITEHRIE--FNHDFDLENVAILDEERSLNKRLISECLHILMQLNSLNLR 146          
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A151IAU7_9HYME (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151IAU7_9HYME)

HSP 1 Score: 88.6 bits (218), Expect = 3.310e-18
Identity = 53/156 (33.97%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    7 HFVVPFIKELQPALRALCTRL-SLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTCNIQKGRD 471
            +F +P+I  +   ++    +  + KL YK    L  ++  ++     M   NVVYKISC  C+ +YVGQTKRTL TR+ EH   ++       V         +  H L+  FSH FD+DN E+L  E +  KRL  E ++I   +N+ N+Q   D
Sbjct:  135 YFTIPYISNMSNKIKNYFNKCDTFKLAYKGINRLDRIVKVQKDKLQTMLHSNVVYKISCGDCDATYVGQTKRTLKTRITEHRNHINWNTQQKSV---------ITEHRLN--FSHEFDWDNVEILDEEINLNKRLISEMLHIHRQKNSLNVQTDTD 279          
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Match: A0A151JB04_9HYME (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151JB04_9HYME)

HSP 1 Score: 87.0 bits (214), Expect = 6.070e-18
Identity = 49/150 (32.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query:   10 FVVPFIKELQPALRALCTRLSLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTCNIQ 459
            F +PF+  +    + +   L +KL +     +  ++  ++       +KNVVYKI+CK C  SYVGQT R L TR+ EH   ++         RK  N + +  H L   F H FD+ N E+L  E ++GKR+  E + I M +N  N++
Sbjct:   91 FTIPFLPCVYKKFKNIIKNLDVKLSFFSLNKMDGIIKAQKDVLPHESRKNVVYKINCKDCNASYVGQTSRKLKTRINEHKNDIN---------RKNGNMSVISEHRLQ--FQHEFDWSNTEILDDERYYGKRMVSEMLNIKMQDNGLNLK 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1085.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151IS59_9HYME7.970e-2134.42GIY-YIG domain-containing protein n=1 Tax=Trachymy... [more]
A0A151JBS6_9HYME2.130e-2034.67GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A195C461_9HYME4.130e-1938.21GIY-YIG domain-containing protein n=2 Tax=Cyphomyr... [more]
A0A151JPB2_9HYME4.590e-1933.11GIY-YIG domain-containing protein n=1 Tax=Trachymy... [more]
A0A151JCH7_9HYME1.070e-1833.77GIY-YIG domain-containing protein n=1 Tax=Trachymy... [more]
A0A151IWB9_9HYME1.390e-1838.21GIY-YIG domain-containing protein (Fragment) n=2 T... [more]
A0A151JBN8_9HYME2.050e-1836.17GIY-YIG domain-containing protein n=1 Tax=Trachymy... [more]
A0A151IS26_9HYME2.160e-1832.00GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A151IAU7_9HYME3.310e-1833.97GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A151JB04_9HYME6.070e-1832.67GIY-YIG domain-containing protein (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1085contigH-akashiwo_Contig1085:6248..6718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog13037.EHJ63722
PFAMsRVT_1
Model size471
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.26e-09
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.6264248-CDS-H-akashiwo_Contig1085:6247..67181681387072.6264248-CDS-H-akashiwo_Contig1085:6247..6718Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1085 6248..6718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1085.1.1prot_H-akashiwo_Contig1085.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1085 6248..6718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1085.1.1

>prot_H-akashiwo_Contig1085.1.1 ID=prot_H-akashiwo_Contig1085.1.1|Name=mRNA_H-akashiwo_Contig1085.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=157bp
VWHFVVPFIKELQPALRALCTRLSLKLLYKRTVNLGNLLAPRRPSTGGMQ
QKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGK
NDTGLPAHCLDTDFSHRFDFDNAEVLGRETHWGKRLKKEAMYIAMVENTC
NIQKGRD
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mRNA from alignment at H-akashiwo_Contig1085:6248..6718-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1085.1.1 ID=mRNA_H-akashiwo_Contig1085.1.1|Name=mRNA_H-akashiwo_Contig1085.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=471bp|location=Sequence derived from alignment at H-akashiwo_Contig1085:6248..6718- (Heterosigma akashiwo CCMP452)
GTGTGGCACTTTGTGGTTCCTTTCATCAAGGAGTTGCAGCCGGCTCTCAG GGCGCTTTGTACTAGGCTGAGTTTGAAGCTTCTTTACAAGAGAACGGTCA ACTTGGGCAATTTGCTGGCTCCTAGAAGACCGTCCACTGGTGGAATGCAG CAGAAGAATGTGGTCTACAAGATCTCTTGTAAGCAGTGTGAGGTTAGTTA TGTTGGTCAGACCAAAAGAACACTAGCCACAAGGGTGAAGGAGCATAGCC GGTCAGTGGATGCAGCCAAGACTTCCTTGTTTGTTGACAGAAAGGGAAAG AACGACACAGGTTTGCCTGCTCACTGTTTGGACACTGATTTCTCTCATCG ATTTGACTTTGACAATGCTGAGGTGCTGGGCAGAGAGACCCACTGGGGTA AGAGGTTGAAGAAGGAGGCCATGTATATTGCAATGGTGGAGAACACTTGC AACATCCAGAAGGGCAGAGAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1085:6248..6718-

>mRNA_H-akashiwo_Contig1085.1.1 ID=mRNA_H-akashiwo_Contig1085.1.1|Name=mRNA_H-akashiwo_Contig1085.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=471bp|location=Sequence derived from alignment at H-akashiwo_Contig1085:6248..6718- (Heterosigma akashiwo CCMP452)
GTGTGGCACTTTGTGGTTCCTTTCATCAAGGAGTTGCAGCCGGCTCTCAG
GGCGCTTTGTACTAGGCTGAGTTTGAAGCTTCTTTACAAGAGAACGGTCA
ACTTGGGCAATTTGCTGGCTCCTAGAAGACCGTCCACTGGTGGAATGCAG
CAGAAGAATGTGGTCTACAAGATCTCTTGTAAGCAGTGTGAGGTTAGTTA
TGTTGGTCAGACCAAAAGAACACTAGCCACAAGGGTGAAGGAGCATAGCC
GGTCAGTGGATGCAGCCAAGACTTCCTTGTTTGTTGACAGAAAGGGAAAG
AACGACACAGGTTTGCCTGCTCACTGTTTGGACACTGATTTCTCTCATCG
ATTTGACTTTGACAATGCTGAGGTGCTGGGCAGAGAGACCCACTGGGGTA
AGAGGTTGAAGAAGGAGGCCATGTATATTGCAATGGTGGAGAACACTTGC
AACATCCAGAAGGGCAGAGAT
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