mRNA_H-akashiwo_Contig1084.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1084.2.1
Unique NamemRNA_H-akashiwo_Contig1084.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1084.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1084contigH-akashiwo_Contig1084:14645..15039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size179
Hectar predicted targeting categorysignal anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.2167222-CDS-H-akashiwo_Contig1084:14644..147011681387072.2167222-CDS-H-akashiwo_Contig1084:14644..14701Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1084 14645..14701 +
1681387072.227464-CDS-H-akashiwo_Contig1084:14919..150391681387072.227464-CDS-H-akashiwo_Contig1084:14919..15039Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1084 14920..15039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1084.2.1prot_H-akashiwo_Contig1084.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1084 14645..15039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1084.2.1

>prot_H-akashiwo_Contig1084.2.1 ID=prot_H-akashiwo_Contig1084.2.1|Name=mRNA_H-akashiwo_Contig1084.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
YRKENVLCCSFFFWSPCNILFSCFGSSLFFVVHFVVDAGGGINTVVVEKY
SSSGSIMF*
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mRNA from alignment at H-akashiwo_Contig1084:14645..15039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1084.2.1 ID=mRNA_H-akashiwo_Contig1084.2.1|Name=mRNA_H-akashiwo_Contig1084.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=395bp|location=Sequence derived from alignment at H-akashiwo_Contig1084:14645..15039+ (Heterosigma akashiwo CCMP452)
TATAGAAAGGAAAATGTGTTGTGTTGTTCTTTTTTTTTTTGGTCACCATG
TAATATAGTTGTTTAGTTGTTTTGGAACAGATATTGTTAGTTTCAACAAC
AGCCCGAAGAATTTCCTATGCTACTACTACTAGTTACCATGTTTTTTTTT
TTATTGAATTAGATCCTTCTTTGTCCGTTAAAAGTGATGTCATGCCATCC
ATATAGAATTTTGCGGGGAAAATGTGTCAAGCAATGTTGTTCCAAGATTT
TTTTTTTGGTCACCATGTAATATAGTTGTTTAGTTGTTTTGGATCATCGT
TGTTCTTCGTTGTACACTTTGTTGTTGATGCAGGGGGCGGGATAAATACT
GTTGTTGTTGAGAAATACTCCTCTTCCGGCAGCATCATGTTTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1084:14645..15039+

>mRNA_H-akashiwo_Contig1084.2.1 ID=mRNA_H-akashiwo_Contig1084.2.1|Name=mRNA_H-akashiwo_Contig1084.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig1084:14645..15039+ (Heterosigma akashiwo CCMP452)
TATAGAAAGGAAAATGTGTTGTGTTGTTCTTTTTTTTTTTGGTCACCATG
TAATATATTGTTTAGTTGTTTTGGATCATCGTTGTTCTTCGTTGTACACT
TTGTTGTTGATGCAGGGGGCGGGATAAATACTGTTGTTGTTGAGAAATAC
TCCTCTTCCGGCAGCATCATGTTTTAA
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