mRNA_H-akashiwo_Contig1084.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1084.1.1
Unique NamemRNA_H-akashiwo_Contig1084.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1084.1.1 vs. uniprot
Match: A0A7S3YBE1_HETAK (Protein-serine/threonine kinase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBE1_HETAK)

HSP 1 Score: 305 bits (781), Expect = 2.280e-102
Identity = 158/160 (98.75%), Postives = 158/160 (98.75%), Query Frame = 2 
Query:   29 MCRYLNEKMVGKTLFKNMASKTRKRALAFSSTQPSVASLTPDFWKAMQAIKTAIVDLGSDYQAAAAEAQEDAERNKILLQRLMKTPTTEVSIQQLILHAKNPDLLISNARFLQDELPVRFAHGAKDLLSLPHGLAELEPIVNLARWYSDTATLLANEPEI 508
            MCRY NEKMVGKTLFKNMASKTRKRALAFSSTQPSV SLTPDFWKAMQAIKTAIVDLGSDYQAAAAEAQEDAERNKILLQRLMKTPTTEVSIQQLILHAKNPDLLISNARFLQDELPVRFAHGAKDLLSLPHGLAELEPIVNLARWYSDTATLLANEPEI
Sbjct:    1 MCRYFNEKMVGKTLFKNMASKTRKRALAFSSTQPSVVSLTPDFWKAMQAIKTAIVDLGSDYQAAAAEAQEDAERNKILLQRLMKTPTTEVSIQQLILHAKNPDLLISNARFLQDELPVRFAHGAKDLLSLPHGLAELEPIVNLARWYSDTATLLANEPEI 160
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BLAST of mRNA_H-akashiwo_Contig1084.1.1 vs. uniprot
Match: M4B4H6_HYAAE (Protein-serine/threonine kinase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4H6_HYAAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.760e-7
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 2 
Query:  272 LMKTPTTEVSIQQLILHAKN--PDLLISNARFLQDELPVRFAHGAKDLLSLPHGLAELEPIVNLARW 466
            + + P T VS+Q L+    +  P  LI +ARFL +E+PVR+AH  K+L  LPHGL+++  +  +  W
Sbjct:    1 MARLPQTGVSLQYLLEFGTSISPQKLIQSARFLHEEMPVRYAHRIKNLEHLPHGLSDMPSVQQVREW 67
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BLAST of mRNA_H-akashiwo_Contig1084.1.1 vs. uniprot
Match: A0A1E7F7C3_9STRA (Protein-serine/threonine kinase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F7C3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.910e-5
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:  314 ILHAKNPDLLISNARFLQDELPVRFAHGAKDLLSLPHGLAELEPIVNLARWY 469
            I+   NP+  I NA+FL +ELPVR A  A DLL+LPHGL E+  ++ +A  Y
Sbjct:    6 IVDVDNPEQRIRNAQFLHNELPVRLAQRAVDLLTLPHGLNEIPAVLQVAHVY 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1084.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3YBE1_HETAK2.280e-10298.75Protein-serine/threonine kinase (Fragment) n=1 Tax... [more]
M4B4H6_HYAAE1.760e-740.30Protein-serine/threonine kinase n=1 Tax=Hyaloperon... [more]
A0A1E7F7C3_9STRA2.910e-550.00Protein-serine/threonine kinase n=1 Tax=Fragilario... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1084contigH-akashiwo_Contig1084:2778..3846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65672.G4T7P2
Preferred namePDK2
PFAMsBCDHK_Adom3,HATPase_c
Model size509
Max annot lvl4751|Fungi
KEGG koko:K00898
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004740,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006468,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0030554,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:0098798,GO:0140096,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
Exons4
Evalue3.53e-11
EggNOG OGsCOG0642@1|root,KOG0787@2759|Eukaryota,38BK5@33154|Opisthokonta,3NUN3@4751|Fungi,3UZDZ@5204|Basidiomycota,228MU@155619|Agaricomycetes,3H281@355688|Agaricomycetes incertae sedis
EC2.7.11.2
DescriptionDehydrogenase
Cds size480
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.2542737-UTR-H-akashiwo_Contig1084:2777..28051681387072.2542737-UTR-H-akashiwo_Contig1084:2777..2805Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1084 2778..2805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.2692478-CDS-H-akashiwo_Contig1084:2805..29911681387072.2692478-CDS-H-akashiwo_Contig1084:2805..2991Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1084 2806..2991 +
1681387072.2775373-CDS-H-akashiwo_Contig1084:3172..32531681387072.2775373-CDS-H-akashiwo_Contig1084:3172..3253Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1084 3173..3253 +
1681387072.2876575-CDS-H-akashiwo_Contig1084:3443..36101681387072.2876575-CDS-H-akashiwo_Contig1084:3443..3610Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1084 3444..3610 +
1681387072.2973669-CDS-H-akashiwo_Contig1084:3800..38461681387072.2973669-CDS-H-akashiwo_Contig1084:3800..3846Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1084 3801..3846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1084.1.1prot_H-akashiwo_Contig1084.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1084 2806..3846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1084.1.1

>prot_H-akashiwo_Contig1084.1.1 ID=prot_H-akashiwo_Contig1084.1.1|Name=mRNA_H-akashiwo_Contig1084.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=160bp
MCRYLNEKMVGKTLFKNMASKTRKRALAFSSTQPSVASLTPDFWKAMQAI
KTAIVDLGSDYQAAAAEAQEDAERNKILLQRLMKTPTTEVSIQQLILHAK
NPDLLISNARFLQDELPVRFAHGAKDLLSLPHGLAELEPIVNLARWYSDT
ATLLANEPEI
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mRNA from alignment at H-akashiwo_Contig1084:2778..3846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1084.1.1 ID=mRNA_H-akashiwo_Contig1084.1.1|Name=mRNA_H-akashiwo_Contig1084.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1069bp|location=Sequence derived from alignment at H-akashiwo_Contig1084:2778..3846+ (Heterosigma akashiwo CCMP452)
CGTTCGCCCTCCTGCTGCAAACGAATCTATGTGTAGATACTTAAATGAAA
AAATGGTGGGGAAAACACTGTTTAAAAATATGGCGTCGAAGACCAGAAAG
AGAGCGTTAGCTTTTTCCTCAACACAGCCGTCTGTGGCTTCTTTGACCCC
AGATTTCTGGAAGGCAATGCAGGCAATCAAAACGGCAATAGTAGATTTAG
GATCAGATTATCAGGTATGAGCAGCACAGAGTATAACCAATAATGATCAA
CAGTGAGTGGTTATGTAAAAGCGCCTGCCATTATATAGCATGATATAAAA
AGGTTGTTGCTTTATATGTATTTGCTTTTGCGCCAACACCACCCACCATC
ACCCAACAAACATTGATGAATCACCTTGGGCTTGGGGAACTACAGGCTGC
TGCAGCTGAGGCACAAGAAGATGCTGAAAGAAATAAAATATTATTGCAGC
GTTTGATGAAAACTCCAACAACTGAAGTGAGAGTTTTTTTCTCCCCTCCC
ACTGTTGGGGACTTTTCGTTGCAAATAGCGAATGGGATGCAATAACTGCA
GTTCTTCTCTCAACACCTGAGGAAGGTCCTCTACGCCAGCCGACCGTCAT
GTTGAAGTAGGAGGAATTGATTTTTCTTCAACACAGTGGCTGAAAACTTT
TCTTGTACTTTATCAGGTGTCCATTCAACAGCTGATCCTTCATGCGAAGA
ACCCAGATCTTCTAATTAGTAATGCAAGGTTCCTTCAAGATGAACTTCCA
GTTCGCTTTGCTCATGGTGCAAAAGATCTATTGTCCCTTCCCCATGGTCT
TGCTGAGCTTGAGCCCATTGTAAATTTGGCAAGGTATTATTTATATAAAA
ATAATACATATATAGTTCACCAATGATACTTTTTCCCTGCTGTTCAAAAT
ACTGTCAGCTCTGGCTGCTGCAATGCGGTTCTCCATGTGTTCCATTTGGT
TGTGCCCTAGTTCCACCTATCTCACCACTCAACAAACCGCTATAATATAA
ATGTAATAATAACTTTGACAAAGGTGGTATAGCGACACAGCCACCTTGCT
CGCCAATGAGCCAGAGATA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1084:2778..3846+

>mRNA_H-akashiwo_Contig1084.1.1 ID=mRNA_H-akashiwo_Contig1084.1.1|Name=mRNA_H-akashiwo_Contig1084.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=480bp|location=Sequence derived from alignment at H-akashiwo_Contig1084:2778..3846+ (Heterosigma akashiwo CCMP452)
ATGTGTAGATACTTAAATGAAAAAATGGTGGGGAAAACACTGTTTAAAAA
TATGGCGTCGAAGACCAGAAAGAGAGCGTTAGCTTTTTCCTCAACACAGC
CGTCTGTGGCTTCTTTGACCCCAGATTTCTGGAAGGCAATGCAGGCAATC
AAAACGGCAATAGTAGATTTAGGATCAGATTATCAGGCTGCTGCAGCTGA
GGCACAAGAAGATGCTGAAAGAAATAAAATATTATTGCAGCGTTTGATGA
AAACTCCAACAACTGAAGTGTCCATTCAACAGCTGATCCTTCATGCGAAG
AACCCAGATCTTCTAATTAGTAATGCAAGGTTCCTTCAAGATGAACTTCC
AGTTCGCTTTGCTCATGGTGCAAAAGATCTATTGTCCCTTCCCCATGGTC
TTGCTGAGCTTGAGCCCATTGTAAATTTGGCAAGGTGGTATAGCGACACA
GCCACCTTGCTCGCCAATGAGCCAGAGATA
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