mRNA_H-akashiwo_Contig1083.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1083.3.1
Unique NamemRNA_H-akashiwo_Contig1083.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 293 bits (750), Expect = 6.960e-91
Identity = 136/150 (90.67%), Postives = 144/150 (96.00%), Query Frame = 1
Query:    1 LSKRFTSPSASCLVASYHLLRYLWWTEDKGVALGGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYKQGCAPVYEDSKACISWANDETVSKSARHIHVSYHYTKEI 450
            LSKRFTSPSA+CL ASYHLLRYLWWTEDKGV LGGPL LTAYADADFCSERHKGRSRSG+AIFLG SPIIWSS+MQHCVTRNTT+AEYVSLRNAVTDVMWLKRLLESL YKQGC P+YED+KACI+WANDETVSKSARHIHVSYHYTKE+
Sbjct:  807 LSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEM 956          
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 146 bits (368), Expect = 8.230e-40
Identity = 72/154 (46.75%), Postives = 99/154 (64.29%), Query Frame = 1
Query:    1 LSKRFTSPSASCLVASYHLLRYLWWTEDKGVALGGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYKQGC-----APVYEDSKACISWANDETVSKSARHIHVSYHYTKE 447
            L +   +P      A     RYL  T+ + + LGG L L A++D+DFC++R  G+S +GY +FLG +PI+WSSK+Q  VT +T +AEY++LR+AV D+MWL+ LLE +    GC      PV ED+ AC+ WAND  V+K  RH HVSYH  KE
Sbjct:  160 LQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEM----GCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKE 309          
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: A0A1Y3N905_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N905_PIRSE)

HSP 1 Score: 106 bits (264), Expect = 1.160e-25
Identity = 48/132 (36.36%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   55 LLRYLWWTEDKGVALGGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYKQGCAPVYEDSKACISWANDETVSKSARHIHVSYHYTKEI 450
            + RYL  T+  G+ +   + +  + DAD   +    RS +G+ IF+GS+P+ W SK+QHCV  +T ++EY SL       MWL+ LL+ L  K  C  +  D+KA I  + +ET++  +RHI++ YH  +E+
Sbjct:   43 IFRYLKGTKYYGIKINKNINIRVFVDADLGGDTESMRSTTGFVIFMGSAPVTWYSKLQHCVALSTAESEYYSLNECALKCMWLRNLLDELGIKIKCITINIDNKAAIYNSKNETINPKSRHINLRYHKIREL 174          
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: A0A1U8MEC4_GOSHI (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MEC4_GOSHI)

HSP 1 Score: 101 bits (251), Expect = 1.990e-22
Identity = 53/151 (35.10%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    1 LSKRFTSPSASCLVASYHLLRYLWWTEDKGVAL-GGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYKQGCAPV-YEDSKACISWANDETVSKSARHIHVSYHYTKE 447
            LS+  +SPS +   A   +LRYL  T D G+      L L  YADAD+ S     RS SGY ++LG++P+ W SK Q  V+R++ +AEY SL N V++++W+++LL  +   Q   P+ + D+ + ++ A + T     +H+ + +H+ +E
Sbjct:  247 LSQYMSSPSDTHWKAIKRVLRYLAGTIDYGLCFTASSLDLVCYADADWASSVDDRRSTSGYVVYLGANPVAWCSKKQSMVSRSSAEAEYRSLANCVSELLWIQQLLNEVGIPQSKIPIIWCDNSSAVAVAENPTHHAKMKHVEIDHHFVRE 397          
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: A0A1U8MGS6_GOSHI (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MGS6_GOSHI)

HSP 1 Score: 95.9 bits (237), Expect = 2.740e-22
Identity = 50/133 (37.59%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   55 LLRYLWWTEDKGVALG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYKQGCAPV-YEDSKACISWANDETVSKSARHIHVSYHYTKE 447
            +LRYL  T D G+ L    L+L  Y+DAD+ S     RS SGY +FLGS+P+ W SK Q  V+R++ +AEY SL N V++++WL++LL  +       PV + D+ + +S A + T     +H+ + +H+ ++
Sbjct:   15 VLRYLAGTIDHGLFLTPSQLKLVCYSDADWVSSIEDRRSTSGYVVFLGSNPVAWCSKKQPVVSRSSAEAEYRSLANCVSELLWLQQLLAEIGIFPSKVPVVWCDNSSAVSVAENPTHHARIKHVEIDHHFVRK 147          
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: A0A8J5ZI29_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZI29_9ROSI)

HSP 1 Score: 101 bits (251), Expect = 4.520e-22
Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = 1
Query:    1 LSKRFTSPSASCLVASYHLLRYLWWTEDKGVALG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYKQGCAP--VYEDSKACISWANDETVSKSARHIHVSYHYTKE 447
            LS+   SPS S   A   +LRYL  T D G+ L  G   L  Y+DAD+ S     RS +GY ++LG++P+ W SK Q  V+R++++AEY SL N V++++W+K LL+ L     C P  ++ D+ + +S A + T     +H+ + +H+ +E
Sbjct:  394 LSQYMNSPSESHWKAVKRVLRYLIGTLDHGLYLSKGQFALVYYSDADWASSVEDRRSTTGYVVYLGANPVAWCSKKQPVVSRSSSEAEYRSLDNCVSELLWVKWLLDELSMPL-CQPPVIWCDNASTVSMAANPTHHARVKHVEIDHHFVRE 544          
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: A0A1U8MG77_GOSHI (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MG77_GOSHI)

HSP 1 Score: 100 bits (248), Expect = 4.900e-22
Identity = 56/154 (36.36%), Postives = 89/154 (57.79%), Query Frame = 1
Query:    1 LSKRFTSPSASCLVASYHLLRYLWWTEDKGVALG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYKQGCAPV-YEDSKACISWANDETVSKSARHIHVSYHYTKEIFL 456
            LS+   +P  +   A   +LRYL  T D G+ L    L+L  Y+DAD+ S     RS SGY +FLGS+P+ W SK Q  V+R++ +AEY SL N V++++WL++LL  +       PV + D+ + +S A + T     +H+ + +H+ +E  L
Sbjct:  193 LSQFMNAPREAHWRALKRVLRYLAGTIDHGLFLTPSQLKLVCYSDADWASSIEDRRSTSGYVVFLGSNPVAWCSKKQPVVSRSSAEAEYRSLANCVSELLWLQQLLAEIGIFPSKVPVVWCDNSSAVSVAENPTHHARMKHVEIDHHFVREKIL 346          
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: A0A8J5Z3G0_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z3G0_9ROSI)

HSP 1 Score: 101 bits (251), Expect = 5.180e-22
Identity = 55/151 (36.42%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    1 LSKRFTSPSASCLVASYHLLRYLWWTEDKGVALG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYKQGCAPV-YEDSKACISWANDETVSKSARHIHVSYHYTKE 447
            LS+   SPS     A   +LRYL  T D G+ L  G   L  Y+DAD+ S     R  +GY +FLG++P+ W SK Q  V+R++++AEY SL N V++++W+K+LL+ L       PV + D+ + +S A + T     +H+ + +H+ +E
Sbjct:  523 LSQYMNSPSELHWKAIKRVLRYLLGTIDHGLYLSKGQFALVCYSDADWASSVEDRRFTTGYVVFLGANPVAWCSKKQPVVSRSSSEAEYRSLANYVSELLWVKQLLDELGLSLSQPPVVWCDNTSAVSMAANPTHHAKVKHVEIDHHFVRE 673          
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB)

HSP 1 Score: 97.4 bits (241), Expect = 6.530e-22
Identity = 51/151 (33.77%), Postives = 83/151 (54.97%), Query Frame = 1
Query:    1 LSKRFTSPSASCLVASYHLLRYLWWTEDKGVALGGP-LRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYK-QGCAPVYEDSKACISWANDETVSKSARHIHVSYHYTKE 447
            +S+   +P      A   +LRY+  T+  G+   G  +  TAY+DADF  +    RS +GY   +   P+IWSS  Q C++R+TT+AEYV+  +A  +V WL+ LL+ L    +   P++ D+++ I    +    K  +HI + YHY +E
Sbjct:   62 VSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSGSHIDFTAYSDADFAGDVDTRRSTTGYITLMAGGPVIWSSHRQKCISRSTTEAEYVAASDASQEVTWLRILLQELCVDLKNPTPLHMDNQSAIRLTKNTEHHKKTKHIDIKYHYIRE 212          
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Match: A0A1U8IYX5_GOSHI (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8IYX5_GOSHI)

HSP 1 Score: 98.2 bits (243), Expect = 7.640e-22
Identity = 50/153 (32.68%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    1 LSKRFTSPSASCLVASYHLLRYLWWTEDKGVALG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMWLKRLLESLEYKQGCAPVYEDSKACISWANDETVSKSARHIHVSYHYTKEIFL 456
            LS+    PS +   A   +LRYL  T D G+    G   +  Y+DAD+ S     RS +GY ++LG +P+ WSSK Q  V+R++++AEY SL N V++++W+K+L++ +   Q    V+ D+ + ++ A + T     +H+ + +H+ ++  L
Sbjct:   91 LSQYMNCPSETHWRAVKRVLRYLIGTSDHGLFFTKGNAAVVGYSDADWASSVEDRRSTTGYVVYLGPNPVAWSSKKQSMVSRSSSEAEYRSLANCVSELLWVKQLVDEIGLSQSIPVVWCDNTSTVAIAANPTHHARMKHVEIDHHFIRKKIL 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1083.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y1P1_HETAK6.960e-9190.67Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DD78_HETAK8.230e-4046.75Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A1Y3N905_PIRSE1.160e-2536.36Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]
A0A1U8MEC4_GOSHI1.990e-2235.10uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1U8MGS6_GOSHI2.740e-2237.59uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A8J5ZI29_9ROSI4.520e-2236.84Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A1U8MG77_GOSHI4.900e-2236.36uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A8J5Z3G0_9ROSI5.180e-2236.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C9BC1AB6.530e-2233.77secreted RxLR effector protein 161-like n=1 Tax=Ve... [more]
A0A1U8IYX5_GOSHI7.640e-2232.68uncharacterized mitochondrial protein AtMg00810-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1083contigH-akashiwo_Contig1083:331973..332428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1005962.W1QCY3
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size456
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.49e-23
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes
Descriptionretrotransposon
Cds size456
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.189312-CDS-H-akashiwo_Contig1083:331972..3324281681387072.189312-CDS-H-akashiwo_Contig1083:331972..332428Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1083 331973..332428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1083.3.1prot_H-akashiwo_Contig1083.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1083 331973..332428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1083.3.1

>prot_H-akashiwo_Contig1083.3.1 ID=prot_H-akashiwo_Contig1083.3.1|Name=mRNA_H-akashiwo_Contig1083.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=152bp
LSKRFTSPSASCLVASYHLLRYLWWTEDKGVALGGPLRLTAYADADFCSE
RHKGRSRSGYAIFLGSSPIIWSSKMQHCVTRNTTQAEYVSLRNAVTDVMW
LKRLLESLEYKQGCAPVYEDSKACISWANDETVSKSARHIHVSYHYTKEI
FL
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mRNA from alignment at H-akashiwo_Contig1083:331973..332428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1083.3.1 ID=mRNA_H-akashiwo_Contig1083.3.1|Name=mRNA_H-akashiwo_Contig1083.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig1083:331973..332428+ (Heterosigma akashiwo CCMP452)
CTGTCAAAGAGGTTTACTTCACCATCTGCAAGCTGCTTGGTTGCTTCTTA TCATCTTCTAAGATACCTTTGGTGGACAGAGGACAAGGGTGTTGCTCTGG GTGGTCCTCTTAGACTGACTGCATATGCAGATGCTGATTTCTGCAGTGAA AGACATAAAGGAAGAAGCAGGTCTGGTTATGCTATCTTCTTGGGATCCTC TCCTATCATATGGTCATCCAAGATGCAACATTGTGTCACAAGAAACACAA CTCAGGCTGAATATGTAAGCCTCAGGAATGCCGTTACTGATGTAATGTGG CTAAAAAGGCTTCTGGAGTCTCTGGAGTACAAACAAGGTTGTGCACCTGT CTATGAGGACAGTAAAGCATGCATCAGTTGGGCAAATGATGAAACTGTCT CTAAATCAGCTCGTCATATTCATGTTTCATATCACTATACTAAGGAAATC TTTCTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1083:331973..332428+

>mRNA_H-akashiwo_Contig1083.3.1 ID=mRNA_H-akashiwo_Contig1083.3.1|Name=mRNA_H-akashiwo_Contig1083.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig1083:331973..332428+ (Heterosigma akashiwo CCMP452)
CTGTCAAAGAGGTTTACTTCACCATCTGCAAGCTGCTTGGTTGCTTCTTA
TCATCTTCTAAGATACCTTTGGTGGACAGAGGACAAGGGTGTTGCTCTGG
GTGGTCCTCTTAGACTGACTGCATATGCAGATGCTGATTTCTGCAGTGAA
AGACATAAAGGAAGAAGCAGGTCTGGTTATGCTATCTTCTTGGGATCCTC
TCCTATCATATGGTCATCCAAGATGCAACATTGTGTCACAAGAAACACAA
CTCAGGCTGAATATGTAAGCCTCAGGAATGCCGTTACTGATGTAATGTGG
CTAAAAAGGCTTCTGGAGTCTCTGGAGTACAAACAAGGTTGTGCACCTGT
CTATGAGGACAGTAAAGCATGCATCAGTTGGGCAAATGATGAAACTGTCT
CTAAATCAGCTCGTCATATTCATGTTTCATATCACTATACTAAGGAAATC
TTTCTT
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