mRNA_H-akashiwo_Contig1083.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1083.1.1
Unique NamemRNA_H-akashiwo_Contig1083.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A836CI24_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI24_9STRA)

HSP 1 Score: 139 bits (351), Expect = 7.200e-40
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 2
Query:   50 SARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFSTA 310
            SARPV+KTS MP DMQE AIQVAQDAI+++N E+EIA AI+ +FE +YP+ WHC VGRNFG++VTHE+SKF YFYIGQMG+CLFSTA
Sbjct:    2 SARPVIKTSTMPADMQEAAIQVAQDAIKDNNLEKEIAHAIKTNFERIYPSVWHCFVGRNFGSFVTHEQSKFIYFYIGQMGVCLFSTA 88          
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: D8LRM6_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM6_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 4.430e-36
Identity = 59/87 (67.82%), Postives = 73/87 (83.91%), Query Frame = 2
Query:   50 SARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFSTA 310
            SARPV+KTS M  DMQE AIQVAQDAIR++N E++IA A++ +FE +YP+ WHC VGRNFG +VTHE +KF Y YIGQ+G+CLFSTA
Sbjct:    2 SARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 88          
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A7S2STQ1_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ1_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.720e-34
Identity = 60/87 (68.97%), Postives = 71/87 (81.61%), Query Frame = 2
Query:   50 SARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFSTA 310
            +ARPV+K S M  DMQE AIQ AQDAI   NTEQEIA AIR++ E M+PATWH +VGRNFG +VTHE SKF YFYIGQ+G+C+F+TA
Sbjct:   30 AARPVIKHSSMTPDMQEMAIQCAQDAIAAKNTEQEIAMAIRQNIETMFPATWHVLVGRNFGCFVTHEASKFIYFYIGQVGVCMFATA 116          
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A7S1UG18_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG18_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.360e-32
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 2
Query:   62 VVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
            VVK S M  +MQ+ A+Q+AQDAIR H TEQEIA AI++ FE++Y  TWHC VGRNFG YVTH+E+ F YFYIGQ+GICLF+T
Sbjct:   41 VVKASRMEQEMQDAAVQIAQDAIREHMTEQEIASAIKQQFESIYHTTWHCFVGRNFGCYVTHQENAFVYFYIGQLGICLFAT 122          
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A7S1C452_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C452_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.850e-24
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 2
Query:   62 VVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
            +VK + M   M E+AI VA  AI++ NTE+E A AI+   EA++P  WHC VGR FG YVTHE SKF YFY+GQ+G+CLFS+
Sbjct:   95 IVKLNQMETVMAERAIDVALRAIKSCNTEKETASAIKAQMEALFPGVWHCFVGRKFGCYVTHESSKFIYFYVGQLGVCLFSS 176          
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A7S3XKJ6_OXYMA (Dynein light chain n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XKJ6_OXYMA)

HSP 1 Score: 100 bits (248), Expect = 5.340e-24
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   41 MAHSARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
            MAHSAR VVK + M  DM E A   A  A+ N+  E++IA  +++ FE +Y  TWHC+VGR+F +YVTHE+  + YFYIGQMG+CL+ T
Sbjct:   23 MAHSARTVVKFAEMDPDMLEFAQSTAISALENNTDEKDIASYLKREFENLYQPTWHCIVGRHFSSYVTHEKKCYCYFYIGQMGVCLWKT 111          
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A2T7NZJ9_POMCA (Dynein light chain n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NZJ9_POMCA)

HSP 1 Score: 97.8 bits (242), Expect = 2.230e-23
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 2
Query:   56 RPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
            + V+K + MP DMQ+ A++ A  A+  HN E++IA  I+K F+  Y  TWHC+VGRNFG+YVTHE   F YFY+GQ+ I LF +
Sbjct:    5 KAVIKNADMPDDMQQDALECANQALEKHNVEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFVYFYLGQVAILLFKS 88          
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A8C4N859_EPTBU (Dynein light chain n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4N859_EPTBU)

HSP 1 Score: 97.8 bits (242), Expect = 2.230e-23
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 2
Query:   56 RPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
            +PV+K + MP DMQE A+  A+ A+   N E++IA  I+K F+  Y  TWHC+VGRNFG+YVTHE   F YFY+GQ+ I LF +
Sbjct:    5 KPVIKNADMPDDMQEDAVSFAKQALDKFNIEKDIASFIKKEFDKKYNPTWHCVVGRNFGSYVTHESKHFIYFYLGQVAILLFKS 88          
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A1D1YTY7_9ARAE (Dynein light chain (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YTY7_9ARAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.590e-23
Identity = 44/102 (43.14%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    2 FTSSSVLLVTAPFMAHSARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
            FT++  + V++  MA + +PV+K   M  +MQ++A++VA+ A+  +  E++IA  I++ F+  + +TWHC+VGRNFG+YVTHE   F YFY+GQM + LF +
Sbjct:    4 FTTTRAMSVSSTPMADNNKPVIKNVDMTEEMQQEAVEVARIALEKYPIEKDIAAYIKREFDKKHGSTWHCIVGRNFGSYVTHETKHFIYFYLGQMAVLLFKS 105          
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A0R3WWJ5_HYDTA (Dynein light chain n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WWJ5_HYDTA)

HSP 1 Score: 97.8 bits (242), Expect = 4.020e-23
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 2
Query:   56 RPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
            + VVK + M  DMQ++A+  AQDA+  +N E++IA  I+K F+ +Y  TWHC+VGRNFG+YVTHE   F YFY+GQ+ I LF +
Sbjct:   26 KAVVKNADMAEDMQQRAVDCAQDAMNKYNVEKDIAAHIKKEFDRLYSPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI24_9STRA7.200e-4073.56Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
D8LRM6_ECTSI4.430e-3667.82Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2STQ1_9STRA4.720e-3468.97Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1UG18_9STRA5.360e-3267.07Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1C452_9STRA3.850e-2457.32Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
A0A7S3XKJ6_OXYMA5.340e-2452.81Dynein light chain n=1 Tax=Oxyrrhis marina TaxID=2... [more]
A0A2T7NZJ9_POMCA2.230e-2351.19Dynein light chain n=1 Tax=Pomacea canaliculata Ta... [more]
A0A8C4N859_EPTBU2.230e-2352.38Dynein light chain n=1 Tax=Eptatretus burgeri TaxI... [more]
A0A1D1YTY7_9ARAE3.590e-2343.14Dynein light chain (Fragment) n=1 Tax=Anthurium am... [more]
A0A0R3WWJ5_HYDTA4.020e-2352.38Dynein light chain n=2 Tax=Hydatigena taeniaeformi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1083contigH-akashiwo_Contig1083:221129..221806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRM6
PFAMsDynein_light
Model size559
Max annot lvl2759|Eukaryota
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.17e-38
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
Cds size273
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.1133158-UTR-H-akashiwo_Contig1083:221128..2211681681387072.1133158-UTR-H-akashiwo_Contig1083:221128..221168Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1083 221129..221168 +
1681387072.156877-UTR-H-akashiwo_Contig1083:221560..2218061681387072.156877-UTR-H-akashiwo_Contig1083:221560..221806Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1083 221561..221806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387072.130172-CDS-H-akashiwo_Contig1083:221168..2213291681387072.130172-CDS-H-akashiwo_Contig1083:221168..221329Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1083 221169..221329 +
1681387072.143053-CDS-H-akashiwo_Contig1083:221448..2215601681387072.143053-CDS-H-akashiwo_Contig1083:221448..221560Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1083 221449..221560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1083.1.1prot_H-akashiwo_Contig1083.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1083 221169..221560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1083.1.1

>prot_H-akashiwo_Contig1083.1.1 ID=prot_H-akashiwo_Contig1083.1.1|Name=mRNA_H-akashiwo_Contig1083.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=91bp
MAHSARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAM
YPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFSTA*
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mRNA from alignment at H-akashiwo_Contig1083:221129..221806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1083.1.1 ID=mRNA_H-akashiwo_Contig1083.1.1|Name=mRNA_H-akashiwo_Contig1083.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=678bp|location=Sequence derived from alignment at H-akashiwo_Contig1083:221129..221806+ (Heterosigma akashiwo CCMP452)
CTTCACTTCCTCATCAGTTTTGCTGGTTACTGCACCGTTCATGGCTCACT CTGCGAGACCGGTTGTTAAGACATCCTTGATGCCTGTAGACATGCAGGAA CAAGCCATCCAGGTTGCTCAAGACGCAATCAGAAATCACAACACTGAGCA GGAAATTGCGCAAGCTATCCGAAAAAGTTTTGAAGCCATGTATCCTGCCA CGTGAGTTGAACTCATTGGTGATGGGTGAAGAGGTTCATTCATAAATGAG AGCTTCATTCATGGCCATTCTCTTGATTTGCTCCTATTTCATCATGTTGT TTTTTTTTCTCTCTGCACAGGTGGCACTGCATGGTTGGTCGAAATTTCGG TGCATATGTGACTCATGAAGAATCCAAATTCGCGTACTTCTACATTGGTC AGATGGGTATATGCTTGTTTTCGACTGCATAGCAGTTTGTAGCACTATAA CTTCTGTCTTGGATGCGGCACCTGTATGCAGCTCGAGTTTGGCGTCTTGT TGGTTGTTGTTTTTCTCAAAATCTGCAGTGACCATTGTTGAGGAATTCTG TGTAGAATGGATCTCAGCCTACAAAAAATACACAAAAATATGGTGCATGT TATTTATTGTTGATAGCATGAGAGGAACCTCGGGGGGGCGGGGCAATTAC AATCATAAAAAAAAATAATCACGCTCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1083:221129..221806+

>mRNA_H-akashiwo_Contig1083.1.1 ID=mRNA_H-akashiwo_Contig1083.1.1|Name=mRNA_H-akashiwo_Contig1083.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=273bp|location=Sequence derived from alignment at H-akashiwo_Contig1083:221129..221806+ (Heterosigma akashiwo CCMP452)
ATGGCTCACTCTGCGAGACCGGTTGTTAAGACATCCTTGATGCCTGTAGA
CATGCAGGAACAAGCCATCCAGGTTGCTCAAGACGCAATCAGAAATCACA
ACACTGAGCAGGAAATTGCGCAAGCTATCCGAAAAAGTTTTGAAGCCATG
TATCCTGCCACGTGGCACTGCATGGTTGGTCGAAATTTCGGTGCATATGT
GACTCATGAAGAATCCAAATTCGCGTACTTCTACATTGGTCAGATGGGTA
TATGCTTGTTTTCGACTGCATAG
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