mRNA_H-akashiwo_Contig1083.1.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A836CI24_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI24_9STRA) HSP 1 Score: 139 bits (351), Expect = 7.200e-40 Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 2
Query: 50 SARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFSTA 310
SARPV+KTS MP DMQE AIQVAQDAI+++N E+EIA AI+ +FE +YP+ WHC VGRNFG++VTHE+SKF YFYIGQMG+CLFSTA
Sbjct: 2 SARPVIKTSTMPADMQEAAIQVAQDAIKDNNLEKEIAHAIKTNFERIYPSVWHCFVGRNFGSFVTHEQSKFIYFYIGQMGVCLFSTA 88
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: D8LRM6_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM6_ECTSI) HSP 1 Score: 130 bits (326), Expect = 4.430e-36 Identity = 59/87 (67.82%), Postives = 73/87 (83.91%), Query Frame = 2
Query: 50 SARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFSTA 310
SARPV+KTS M DMQE AIQVAQDAIR++N E++IA A++ +FE +YP+ WHC VGRNFG +VTHE +KF Y YIGQ+G+CLFSTA
Sbjct: 2 SARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 88
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A7S2STQ1_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ1_9STRA) HSP 1 Score: 125 bits (315), Expect = 4.720e-34 Identity = 60/87 (68.97%), Postives = 71/87 (81.61%), Query Frame = 2
Query: 50 SARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFSTA 310
+ARPV+K S M DMQE AIQ AQDAI NTEQEIA AIR++ E M+PATWH +VGRNFG +VTHE SKF YFYIGQ+G+C+F+TA
Sbjct: 30 AARPVIKHSSMTPDMQEMAIQCAQDAIAAKNTEQEIAMAIRQNIETMFPATWHVLVGRNFGCFVTHEASKFIYFYIGQVGVCMFATA 116
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A7S1UG18_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG18_9STRA) HSP 1 Score: 120 bits (302), Expect = 5.360e-32 Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 2
Query: 62 VVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
VVK S M +MQ+ A+Q+AQDAIR H TEQEIA AI++ FE++Y TWHC VGRNFG YVTH+E+ F YFYIGQ+GICLF+T
Sbjct: 41 VVKASRMEQEMQDAAVQIAQDAIREHMTEQEIASAIKQQFESIYHTTWHCFVGRNFGCYVTHQENAFVYFYIGQLGICLFAT 122
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A7S1C452_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C452_9STRA) HSP 1 Score: 102 bits (254), Expect = 3.850e-24 Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 2
Query: 62 VVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
+VK + M M E+AI VA AI++ NTE+E A AI+ EA++P WHC VGR FG YVTHE SKF YFY+GQ+G+CLFS+
Sbjct: 95 IVKLNQMETVMAERAIDVALRAIKSCNTEKETASAIKAQMEALFPGVWHCFVGRKFGCYVTHESSKFIYFYVGQLGVCLFSS 176
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A7S3XKJ6_OXYMA (Dynein light chain n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XKJ6_OXYMA) HSP 1 Score: 100 bits (248), Expect = 5.340e-24 Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 2
Query: 41 MAHSARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
MAHSAR VVK + M DM E A A A+ N+ E++IA +++ FE +Y TWHC+VGR+F +YVTHE+ + YFYIGQMG+CL+ T
Sbjct: 23 MAHSARTVVKFAEMDPDMLEFAQSTAISALENNTDEKDIASYLKREFENLYQPTWHCIVGRHFSSYVTHEKKCYCYFYIGQMGVCLWKT 111
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A2T7NZJ9_POMCA (Dynein light chain n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NZJ9_POMCA) HSP 1 Score: 97.8 bits (242), Expect = 2.230e-23 Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 2
Query: 56 RPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
+ V+K + MP DMQ+ A++ A A+ HN E++IA I+K F+ Y TWHC+VGRNFG+YVTHE F YFY+GQ+ I LF +
Sbjct: 5 KAVIKNADMPDDMQQDALECANQALEKHNVEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFVYFYLGQVAILLFKS 88
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A8C4N859_EPTBU (Dynein light chain n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4N859_EPTBU) HSP 1 Score: 97.8 bits (242), Expect = 2.230e-23 Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 2
Query: 56 RPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
+PV+K + MP DMQE A+ A+ A+ N E++IA I+K F+ Y TWHC+VGRNFG+YVTHE F YFY+GQ+ I LF +
Sbjct: 5 KPVIKNADMPDDMQEDAVSFAKQALDKFNIEKDIASFIKKEFDKKYNPTWHCVVGRNFGSYVTHESKHFIYFYLGQVAILLFKS 88
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A1D1YTY7_9ARAE (Dynein light chain (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YTY7_9ARAE) HSP 1 Score: 97.8 bits (242), Expect = 3.590e-23 Identity = 44/102 (43.14%), Postives = 72/102 (70.59%), Query Frame = 2
Query: 2 FTSSSVLLVTAPFMAHSARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
FT++ + V++ MA + +PV+K M +MQ++A++VA+ A+ + E++IA I++ F+ + +TWHC+VGRNFG+YVTHE F YFY+GQM + LF +
Sbjct: 4 FTTTRAMSVSSTPMADNNKPVIKNVDMTEEMQQEAVEVARIALEKYPIEKDIAAYIKREFDKKHGSTWHCIVGRNFGSYVTHETKHFIYFYLGQMAVLLFKS 105
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Match: A0A0R3WWJ5_HYDTA (Dynein light chain n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WWJ5_HYDTA) HSP 1 Score: 97.8 bits (242), Expect = 4.020e-23 Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 2
Query: 56 RPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMYPATWHCMVGRNFGAYVTHEESKFAYFYIGQMGICLFST 307
+ VVK + M DMQ++A+ AQDA+ +N E++IA I+K F+ +Y TWHC+VGRNFG+YVTHE F YFY+GQ+ I LF +
Sbjct: 26 KAVVKNADMAEDMQQRAVDCAQDAMNKYNVEKDIAAHIKKEFDRLYSPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 109 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1083.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1083.1.1 >prot_H-akashiwo_Contig1083.1.1 ID=prot_H-akashiwo_Contig1083.1.1|Name=mRNA_H-akashiwo_Contig1083.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=91bp MAHSARPVVKTSLMPVDMQEQAIQVAQDAIRNHNTEQEIAQAIRKSFEAMback to top mRNA from alignment at H-akashiwo_Contig1083:221129..221806+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1083.1.1 ID=mRNA_H-akashiwo_Contig1083.1.1|Name=mRNA_H-akashiwo_Contig1083.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=678bp|location=Sequence derived from alignment at H-akashiwo_Contig1083:221129..221806+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1083:221129..221806+ >mRNA_H-akashiwo_Contig1083.1.1 ID=mRNA_H-akashiwo_Contig1083.1.1|Name=mRNA_H-akashiwo_Contig1083.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=273bp|location=Sequence derived from alignment at H-akashiwo_Contig1083:221129..221806+ (Heterosigma akashiwo CCMP452)back to top |