mRNA_H-akashiwo_Contig1082.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1082.7.1
Unique NamemRNA_H-akashiwo_Contig1082.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1082.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1082contigH-akashiwo_Contig1082:306037..306505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size332
Hectar predicted targeting categoryother localisation
Exons2
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387071.7808332-CDS-H-akashiwo_Contig1082:306036..3063041681387071.7808332-CDS-H-akashiwo_Contig1082:306036..306304Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1082 306037..306304 -
1681387071.7911704-CDS-H-akashiwo_Contig1082:306441..3064941681387071.7911704-CDS-H-akashiwo_Contig1082:306441..306494Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1082 306442..306494 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387071.801165-UTR-H-akashiwo_Contig1082:306494..3065051681387071.801165-UTR-H-akashiwo_Contig1082:306494..306505Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1082 306495..306505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1082.7.1prot_H-akashiwo_Contig1082.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1082 306037..306494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1082.7.1

>prot_H-akashiwo_Contig1082.7.1 ID=prot_H-akashiwo_Contig1082.7.1|Name=mRNA_H-akashiwo_Contig1082.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=107bp
MVPHEDSHSQPQHEHLMGCDFFSALLDSFSPGGSPTPGSPQSHQHLHMLG
HGSLAWPGGSPYAGPAPVPQAPPGMGSSNCQGGWGMPQVAPGAPAGIHSM
PHLDLNQ
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mRNA from alignment at H-akashiwo_Contig1082:306037..306505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1082.7.1 ID=mRNA_H-akashiwo_Contig1082.7.1|Name=mRNA_H-akashiwo_Contig1082.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=469bp|location=Sequence derived from alignment at H-akashiwo_Contig1082:306037..306505- (Heterosigma akashiwo CCMP452)
ACAAGATCAAGATGGTACCTCACGAGGACAGCCATTCCCAGCCACAACAT
GAACACCTAATGGGGTATGTAACAAAGCACCACCGCCCCCTGACTGCTGT
GCATATTCTGAACTGCCTTGGGATTTTGTATCAGCGCATCCAAATCGTTG
AGCAAGTCTTGCTTTATTTTCCTTTCTTAACTCTCAACAATACCATGGCA
GGTGCGACTTTTTTTCTGCGCTTCTGGATAGCTTTTCACCCGGAGGCAGC
CCCACCCCTGGCTCCCCACAAAGCCACCAGCATCTTCACATGCTTGGCCA
TGGTAGCTTGGCTTGGCCAGGTGGCTCGCCGTATGCAGGCCCGGCTCCAG
TTCCCCAGGCACCGCCAGGAATGGGCTCTTCAAATTGTCAAGGTGGATGG
GGCATGCCTCAGGTTGCCCCAGGAGCTCCCGCTGGCATTCATAGCATGCC
TCACCTGGACCTTAACCAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1082:306037..306505-

>mRNA_H-akashiwo_Contig1082.7.1 ID=mRNA_H-akashiwo_Contig1082.7.1|Name=mRNA_H-akashiwo_Contig1082.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=321bp|location=Sequence derived from alignment at H-akashiwo_Contig1082:306037..306505- (Heterosigma akashiwo CCMP452)
ATGGTACCTCACGAGGACAGCCATTCCCAGCCACAACATGAACACCTAAT
GGGGTGCGACTTTTTTTCTGCGCTTCTGGATAGCTTTTCACCCGGAGGCA
GCCCCACCCCTGGCTCCCCACAAAGCCACCAGCATCTTCACATGCTTGGC
CATGGTAGCTTGGCTTGGCCAGGTGGCTCGCCGTATGCAGGCCCGGCTCC
AGTTCCCCAGGCACCGCCAGGAATGGGCTCTTCAAATTGTCAAGGTGGAT
GGGGCATGCCTCAGGTTGCCCCAGGAGCTCCCGCTGGCATTCATAGCATG
CCTCACCTGGACCTTAACCAA
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