mRNA_H-akashiwo_Contig1081.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1081.9.1
Unique NamemRNA_H-akashiwo_Contig1081.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 218 bits (554), Expect = 1.490e-68
Identity = 107/118 (90.68%), Postives = 108/118 (91.53%), Query Frame = 1 
Query:   31 MVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREM---LEGAYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            MVKKKTGE  MCLDLRSLNAI TPAKFPLPTPREM   LEGAYYFSSLDMLWAYWSVPLR+EDKHKTAFTVRNKKYAFNVMCFGLTNAPATFS LVNKVFQ  QH FALCFLDDVLCY
Sbjct:    1 MVKKKTGETRMCLDLRSLNAITTPAKFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCY 118
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BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 212 bits (540), Expect = 1.900e-64
Identity = 104/128 (81.25%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:    1 SASNFNAPIVMVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREMLEG---AYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            S+SNFNAPIVMV KK+GE  MCLDLR+LNAI TP+KFPLPT REM +    AYYF+SLDMLWAYWSVPLRE DK KTAFTVRN+KYAFNVMCFGLTNAPATFS LVNKVFQ  Q+ FALCFLDDVLCY
Sbjct:  129 SSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCY 256
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BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 212 bits (540), Expect = 6.610e-63
Identity = 104/128 (81.25%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:    1 SASNFNAPIVMVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREMLEG---AYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            S+SNFNAPIVMV KK+GE  MCLDLR+LNAI TP+KFPLPT REM +    AYYF+SLDMLWAYWSVPLRE DK KTAFTVRN+KYAFNVMCFGLTNAPATFS LVNKVFQ  Q+ FALCFLDDVLCY
Sbjct:  129 SSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCY 256
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BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A392P4D4_9FABA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P4D4_9FABA)

HSP 1 Score: 118 bits (295), Expect = 1.570e-30
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:    1 SASNFNAPIVMVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREMLE---GAYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            S S F++PI++VKKK G    C D R+LNAI     FP+PT  E+L+   GA YFS LD+   Y  + ++ +D+HKTAF   +  Y + VM FGLTNAPATF  L+NK+FQ     F L F DD+L Y
Sbjct:   66 SNSPFSSPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELYGAKYFSKLDLRSGYHQILVQPDDRHKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQTALRKFVLVFFDDILVY 193
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BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A2I0BEL8_9ASPA (Putative mitochondrial protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BEL8_9ASPA)

HSP 1 Score: 122 bits (305), Expect = 5.040e-30
Identity = 63/128 (49.22%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:    1 SASNFNAPIVMVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREMLE---GAYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            SAS F++PIV++KKK G   +C+D R+LN+     +FP+P   E+L+   GA YFS LD+   YW V + EED  KTAF      Y F VM FGLTNAPATF RL+N +F+     F L F DD+L Y
Sbjct:  235 SASPFSSPIVLIKKKDGSWRLCVDYRNLNSETVRDRFPIPIIEELLDELHGAVYFSKLDLRSGYWQVRMIEEDIKKTAFRTHEGHYEFLVMPFGLTNAPATFQRLMNSIFKPHLRKFTLVFFDDILIY 362
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BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A2I0BG85_9ASPA (Putative mitochondrial protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BG85_9ASPA)

HSP 1 Score: 122 bits (307), Expect = 5.790e-30
Identity = 62/128 (48.44%), Postives = 80/128 (62.50%), Query Frame = 1 
Query:    1 SASNFNAPIVMVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREMLE---GAYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            S+S F++PIV+VKKK G    C+D R LNA     KFP+P   E+L+   G+ Y+S LD+   YW + + E D  KTAF      Y F VM FGLTNAPATF +L+N +F+ F   F L FLDD+L Y
Sbjct:  245 SSSPFSSPIVLVKKKDGSWRFCVDYRELNAKTIKDKFPIPVVEELLDELYGSSYYSKLDLKSGYWQIRMSENDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQKLMNSIFKPFLRKFVLVFLDDILVY 372
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BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A2I0BA94_9ASPA (Putative mitochondrial protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BA94_9ASPA)

HSP 1 Score: 122 bits (306), Expect = 7.970e-30
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 1 
Query:    1 SASNFNAPIVMVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREMLE---GAYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            S S F++P+V++KKK G   +C+D R LNA     KFP+P   E+L+   G+ YFS +D+   YW V + E+D  KTAF      Y F VM FGLTNAPATF RL+N +F+ F   F L F DD+L Y
Sbjct:  653 SISPFSSPVVLIKKKDGSWRLCIDYRELNAKTIRDKFPIPVIEELLDELHGSQYFSKMDLRSGYWQVRMFEDDIRKTAFRTHEGHYEFLVMPFGLTNAPATFQRLMNSIFKPFLRQFVLVFFDDILIY 780
[Close]
BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A392PP11_9FABA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PP11_9FABA)

HSP 1 Score: 114 bits (286), Expect = 8.210e-30
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:    1 SASNFNAPIVMVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREMLE---GAYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            S S F++PI++VKKK G    C D R+LN I     FP+PT  E+L+   GA YFS LD+   Y  + ++ ED+ KTAF   +  Y + VM FGLTNAPATF  L+NK+FQ     F L F DD+L Y
Sbjct:   14 SNSPFSSPILLVKKKDGSWRFCTDYRALNTITVKDSFPMPTVDELLDELYGAMYFSKLDLRSGYHQILVKPEDRCKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQSALRKFVLVFFDDILVY 141
[Close]
BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A2I0ABD9_9ASPA (RNA-directed DNA polymerase like n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0ABD9_9ASPA)

HSP 1 Score: 115 bits (288), Expect = 9.740e-30
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:    1 SASNFNAPIVMVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREMLE---GAYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            SAS F++PIV++KK  G   +C+D R LN+     +FP+P   E+L+   G+ YFS LD+  +YW V + EED  KTAF      Y F VM FGLTNAPATF +L+N +F+ +   F L F DD+L Y
Sbjct:   12 SASPFSSPIVLIKKD-GSWRLCVDYRELNSKIIRDRFPIPVIEELLDELYGSTYFSKLDLRSSYWQVRMMEEDIRKTAFRTHEGHYEFLVMPFGLTNAPATFQKLMNSIFKSYLRMFVLVFFDDILVY 138
[Close]
BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Match: A0A6B0VG58_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0VG58_IXORI)

HSP 1 Score: 121 bits (303), Expect = 1.980e-29
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:    1 SASNFNAPIVMVKKKTGEPHMCLDLRSLNAIKTPAKFPLPT---PREMLEGAYYFSSLDMLWAYWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEFQHYFALCFLDDVLCY 375
            S S+F++P+V+VKKK G    C+D R LN I     +P+P      + L+GA YFSSLD+   YW +P+ EEDK KTAF   +  Y FNVM FGL NAPATF R+++ + +  +    LC+LDD++ +
Sbjct:   68 SCSSFSSPVVLVKKKDGGIRFCIDYRELNEITRKDLYPMPRIDDALDSLQGAEYFSSLDLRSGYWQIPVNEEDKEKTAFVTPDGLYEFNVMPFGLCNAPATFERMIDNILRGLKWKTCLCYLDDIVIF 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1081.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XU57_HETAK1.490e-6890.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XVA0_HETAK1.900e-6481.25Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK6.610e-6381.25Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A392P4D4_9FABA1.570e-3048.44Reverse transcriptase domain-containing protein (F... [more]
A0A2I0BEL8_9ASPA5.040e-3049.22Putative mitochondrial protein n=1 Tax=Apostasia s... [more]
A0A2I0BG85_9ASPA5.790e-3048.44Putative mitochondrial protein n=1 Tax=Apostasia s... [more]
A0A2I0BA94_9ASPA7.970e-3047.66Putative mitochondrial protein n=1 Tax=Apostasia s... [more]
A0A392PP11_9FABA8.210e-3047.66Reverse transcriptase domain-containing protein (F... [more]
A0A2I0ABD9_9ASPA9.740e-3046.88RNA-directed DNA polymerase like n=1 Tax=Apostasia... [more]
A0A6B0VG58_IXORI1.980e-2945.31RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1081contigH-akashiwo_Contig1081:322431..322805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog27289.XP_003670625.1
PFAMsPeptidase_A2E,RVT_1,rve
Model size375
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003964,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Exons1
Evalue7.16e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,3QP1S@4890|Ascomycota,3RRCD@4891|Saccharomycetes,3RZKH@4893|Saccharomycetaceae
Descriptionretrotransposon
Cds size345
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387071.678471-UTR-H-akashiwo_Contig1081:322430..3224601681387071.678471-UTR-H-akashiwo_Contig1081:322430..322460Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1081 322431..322460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387071.6956785-CDS-H-akashiwo_Contig1081:322460..3228051681387071.6956785-CDS-H-akashiwo_Contig1081:322460..322805Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1081 322461..322805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1081.9.1prot_H-akashiwo_Contig1081.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1081 322461..322805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1081.9.1

>prot_H-akashiwo_Contig1081.9.1 ID=prot_H-akashiwo_Contig1081.9.1|Name=mRNA_H-akashiwo_Contig1081.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=115bp
MVKKKTGEPHMCLDLRSLNAIKTPAKFPLPTPREMLEGAYYFSSLDMLWA
YWSVPLREEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSRLVNKVFQEF
QHYFALCFLDDVLCY
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mRNA from alignment at H-akashiwo_Contig1081:322431..322805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1081.9.1 ID=mRNA_H-akashiwo_Contig1081.9.1|Name=mRNA_H-akashiwo_Contig1081.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=375bp|location=Sequence derived from alignment at H-akashiwo_Contig1081:322431..322805+ (Heterosigma akashiwo CCMP452)
TCGGCTAGTAACTTTAATGCTCCTATTGTAATGGTCAAAAAGAAGACAGG
AGAACCACACATGTGCTTAGACTTGCGCAGTCTCAACGCAATAAAAACGC
CAGCAAAGTTCCCTTTACCTACACCAAGGGAAATGTTGGAAGGTGCTTAC
TACTTCTCCAGTCTAGACATGTTATGGGCCTATTGGAGTGTACCACTCAG
AGAGGAAGATAAGCATAAGACAGCATTTACTGTGCGCAACAAGAAATATG
CATTCAATGTGATGTGCTTTGGTCTCACTAATGCACCAGCAACATTCAGT
CGCCTGGTCAACAAAGTTTTTCAAGAATTTCAGCACTACTTTGCATTGTG
TTTCCTTGATGACGTATTATGCTAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1081:322431..322805+

>mRNA_H-akashiwo_Contig1081.9.1 ID=mRNA_H-akashiwo_Contig1081.9.1|Name=mRNA_H-akashiwo_Contig1081.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=345bp|location=Sequence derived from alignment at H-akashiwo_Contig1081:322431..322805+ (Heterosigma akashiwo CCMP452)
ATGGTCAAAAAGAAGACAGGAGAACCACACATGTGCTTAGACTTGCGCAG
TCTCAACGCAATAAAAACGCCAGCAAAGTTCCCTTTACCTACACCAAGGG
AAATGTTGGAAGGTGCTTACTACTTCTCCAGTCTAGACATGTTATGGGCC
TATTGGAGTGTACCACTCAGAGAGGAAGATAAGCATAAGACAGCATTTAC
TGTGCGCAACAAGAAATATGCATTCAATGTGATGTGCTTTGGTCTCACTA
ATGCACCAGCAACATTCAGTCGCCTGGTCAACAAAGTTTTTCAAGAATTT
CAGCACTACTTTGCATTGTGTTTCCTTGATGACGTATTATGCTAT
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