mRNA_H-akashiwo_Contig108.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig108.5.1
Unique NamemRNA_H-akashiwo_Contig108.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 438 bits (1126), Expect = 6.640e-152
Identity = 220/251 (87.65%), Postives = 232/251 (92.43%), Query Frame = 1
Query:  154 MELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKF--DSITSLRKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLAL 900
            MELHDHL SLGFKRSGHESCLY  RD   ELMVAVYVDDLVISGSSQA+VS+FKQSLASKY LTDQGELTQILGIKV+RDKR KCFHLSQTSF +  LAKF  D + +  KTP+DHTVDLTPTPGF+A+LSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQ NPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSD+DFCNDR+DGKSVTGY+LFLGDAPIVWSSKLQGAVTTSTVEAEYLAL
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPAC-KTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLAL 250          
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 402 bits (1032), Expect = 6.310e-139
Identity = 201/234 (85.90%), Postives = 211/234 (90.17%), Query Frame = 1
Query:    1 LDTSTAFLNGAMTGNVYVRQPPGYVNP*HPNKVWKLNKALCGLKQSPRVWYMELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKF--DSITSLRKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYL 696
            LD STAFLNGAMT +VYVRQPP YV+P HPNKVWKLNKAL GLKQSPRVWYMELHDHL SLGFKRSGHESCLY  RD   ELMVAVYVDDLVISGSSQAIVS+FKQSLASKY+LTDQGELTQILGIKV+RDKR KCFHLSQTSF +  LAKF  D + +  KTPIDHTVDLTPTPGF+A+LSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQ NPEPKHFEAVQRAFRYL
Sbjct:   36 LDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPAC-KTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 240 bits (612), Expect = 8.680e-69
Identity = 120/304 (39.47%), Postives = 198/304 (65.13%), Query Frame = 1
Query:    1 LDTSTAFLNGAMTGNVYVRQPPGYVNP*HPNKVWKLNKALCGLKQSPRVWYMELHDHLVSLGFKRSGHESCLYTRRDESG-ELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKFDSITSLRKT-PIDHTVDLTPTPGFEAKLS--DANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLAL 900
            +D  TAFL+G +  ++Y++QP GY  P   +KV KL K+L GLKQ+P+ WY  L+  L+  G+ R+G++SC+Y++   +G + +++VYVDD+V++ S ++ +S  K++++  Y+++D GE+  ILGIKV RD+  +   LSQ SF +    KF   +    T P++  +D+        +LS  +A  +RS+VGT+ W+A WT PE+A+++H L +  ++P      A     RYL  T+ + + LGG L L A++DADFC++R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++L
Sbjct:  594 MDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSL 897          
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: A0A6D2HVH8_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HVH8_9BRAS)

HSP 1 Score: 215 bits (548), Expect = 7.330e-64
Identity = 116/303 (38.28%), Postives = 181/303 (59.74%), Query Frame = 1
Query:    1 LDTSTAFLNGAMTGNVYVRQPPGYVNP*HPNKVWKLNKALCGLKQSPRVWYMELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKFDSITSLRKTPIDHTVDLTPTP----GFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSES--LRLGGDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEY 891
            LD + AFL G +T  VYV QPPG+++   P+   +L+KAL GLKQ+PR WY EL ++L++LGF+ S  ++ ++     +  L   VYVDD++++GSS A+V  F  +++S++ L D  +L+  LGI+  R ++G   HL Q  +    L + + + S    P+     ++PTP     F + L D + YR+++G+L ++  +TRP++A+AV++L +    P  +H+ A +R  RYL GT S    LR    L L A+SDAD+  D  D  S   Y+L++G  PI WSSK Q  V  S+ EAEY
Sbjct:   49 LDVNNAFLQGTLTDEVYVTQPPGFIDKDRPDHACRLHKALYGLKQAPRAWYQELRNYLLALGFQNSLADTSVFVYSKGADLLYTLVYVDDIIVTGSSTALVDRFIAAISSRFSLKDPTDLSYFLGIEATRSQKG--LHLMQRKYIIDLLTRTNMLNS---KPV--ATPMSPTPKLSLNFGSPLDDPSQYRTVIGSLQYLG-YTRPDIAYAVNRLSQFMHRPTDEHWNAAKRVLRYLAGTASHGFFLRANNPLTLHAYSDADWAGDVDDFVSTNAYILYIGATPIAWSSKKQKGVARSSTEAEY 343          
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: UPI0009018C2D (uncharacterized protein LOC109126494 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI0009018C2D)

HSP 1 Score: 213 bits (543), Expect = 7.520e-64
Identity = 121/303 (39.93%), Postives = 186/303 (61.39%), Query Frame = 1
Query:    1 LDTSTAFLNGAMTGNVYVRQPPGYVNP*HPNKVWKLNKALCGLKQSPRVWYMELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKFDSITSLR-KTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLAL 900
            +D + AFL G++T  VYV Q PG+V+   P+ V +L KAL GLKQ+ R WY EL  +L++LGF  S  ++ L+TR++    + V VYVDD++I+G++ A+++ F   LA+++ L D GEL+  LGI+  R  +G   HL Q  +    LAK + + S    TP+  T  LT T G    L+    YR+++G+L +++ +TRP++AFAV++L +    P   +++A +R  RYL GT +  + L  D  + L A+SDAD+  D  DG S   Y+L+LG  PI WSS+ Q  V  S+ E+EY A+
Sbjct:   34 IDVNNAFLQGSLTDEVYVTQTPGFVDQDRPHYVCRLRKALYGLKQASRAWYQELRSYLLTLGFTNSIADTSLFTRKNGRDVVHVLVYVDDMLITGNNNALLTSFIAHLAARFSLKDLGELSYFLGIEATRTSKG--LHLMQKRYILDLLAKTNMLHSRPVSTPMAPTPKLTLTSG--TPLATPTEYRAVLGSLQYLS-FTRPDIAFAVNRLSQFMHAPTELYWQAAKRILRYLAGTTTVGIFLRSDTPMTLHAYSDADWSRDLEDGVSTNAYILYLGGNPISWSSRKQRGVARSSTESEYRAV 331          
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: A0A2N9GBV9_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GBV9_FAGSY)

HSP 1 Score: 218 bits (554), Expect = 4.280e-63
Identity = 121/303 (39.93%), Postives = 179/303 (59.08%), Query Frame = 1
Query:    1 LDTSTAFLNGAMTGNVYVRQPPGYVNP*HPNKVWKLNKALCGLKQSPRVWYMELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKFD-SITSLRKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLAL 900
            +D   AFLNG +T  VY++ PPGY +  +P+KV  L +AL GLKQ+PR W+ +    +   GF  S H++ L+ RR + G +++ +YVDD++I+G   + +SDFK  L  ++++ D G L+  LG++V  D  G  ++LSQ  +    L++   + T +  TP++    LTP  G    LSDA LYR +VG+L ++   TRP++A AVH + +  S P   H+ AV    RY+KGT    L       L L A+SDAD+  D  D +S TG+  FLGD+ I W SK Q  V+ S+ EAEY AL
Sbjct:  166 MDVKNAFLNGDLTEEVYMQAPPGYSD--YPDKVCLLRRALYGLKQAPRAWFAKFSSIVHQFGFSSSSHDTTLFIRRSDKGMILLLLYVDDMIITGDDHSGISDFKLFLHQQFEMKDLGHLSYFLGLEVSSDSTG--YYLSQAKYASDLLSRAGLTDTKVVSTPLEMNARLTPLDG--TPLSDATLYRQLVGSLVYLTV-TRPDIAHAVHLVSQFLSAPHSTHYAAVLHILRYIKGTMFHGLHFSAHSTLDLCAYSDADWAGDPTDRRSTTGFCFFLGDSLISWRSKKQHIVSRSSTEAEYRAL 461          
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: A0A2N9GDZ1_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GDZ1_FAGSY)

HSP 1 Score: 216 bits (550), Expect = 5.600e-63
Identity = 121/303 (39.93%), Postives = 178/303 (58.75%), Query Frame = 1
Query:    1 LDTSTAFLNGAMTGNVYVRQPPGYVNP*HPNKVWKLNKALCGLKQSPRVWYMELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKFD-SITSLRKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLAL 900
            +D   AFLNG +T  VY++ PPGY +   P+KV  L +AL GLKQ+PR W+ +    +   GF  S H++ L+ RR + G +++ +YVDD++I+G   + +SDFK  L  ++++ D G L+  LG++V  D  G  ++LSQ  +    L++   + T +  TP++    LTP  G    LSDA LYR +VG+L ++   TRP++A AVH + +  S P   H+ AV    RY+KGT    L       L L A+SDAD+  D  D +S TG+  FLGD+ I W SK Q  V+ S+ EAEY AL
Sbjct:  115 MDVKNAFLNGDLTEEVYMQAPPGYSDC--PDKVCLLRRALYGLKQAPRAWFAKFSSIVHQFGFSSSSHDTALFIRRSDKGMILLLLYVDDMIITGDDHSGISDFKLFLHQQFEMKDLGHLSYFLGLEVSSDSTG--YYLSQAKYASDLLSRAGLTDTKVVSTPLEMNARLTPLDG--TPLSDATLYRQLVGSLVYLTV-TRPDIAHAVHLVSQFLSAPHSTHYAAVLHILRYIKGTMFHGLHFSAHSTLDLCAYSDADWAGDPTDRRSTTGFCFFLGDSLISWRSKKQHIVSRSSTEAEYRAL 410          
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: UPI000CD8E793 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8E793)

HSP 1 Score: 211 bits (537), Expect = 3.040e-62
Identity = 125/304 (41.12%), Postives = 181/304 (59.54%), Query Frame = 1
Query:    1 LDTSTAFLNGAMTGNVYVRQPPGYVNP*HPNKVWKLNKALCGLKQSPRVWYMELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKFDSITSLR--KTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGG--DLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLAL 900
            +D   AFL+G +T  VY++ PPG  +P   + V +L KAL GLKQ+PR W+ + +  + SLGF  S ++S L+T+   SG +++ +YVDD++I+GS    + D KQSL+S +++ D G L   LG++V+    G   +LSQ  +    +++   IT  +   TP+D    L+P  G  + LSD  LYR +VG+L ++   TRP+LAFAVH + +  ++P   H+ AV R  RY+KGT    L       L LRAFSDAD+  D  D +S TG+  FLGD  I W SK Q  V  S+ EAEY AL
Sbjct:    1 MDVKNAFLHGDLTKEVYMKPPPGVTHP--HDHVCRLKKALYGLKQAPRAWFEKFNTIIQSLGFTASNYDSGLFTKTTTSGTILLILYVDDMIITGSDAHGILDLKQSLSSYFEMKDLGLLHYFLGLEVLPHDTG--IYLSQAKYASDIISRA-GITDCKVANTPLDPNFHLSPGDG--SLLSDPTLYRQLVGSLIYLTV-TRPDLAFAVHIVSQFMASPRTTHYIAVLRILRYIKGTIFHGLYFSSTSSLELRAFSDADWDGDITDRRSTTGFCFFLGDLLISWRSKKQSLVARSSTEAEYRAL 296          
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: A0A2K3MW90_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MW90_TRIPR)

HSP 1 Score: 220 bits (561), Expect = 1.830e-61
Identity = 126/305 (41.31%), Postives = 181/305 (59.34%), Query Frame = 1
Query:    1 LDTSTAFLNGAMTGNVYVRQPPGYVNP*HPNKVWKLNKALCGLKQSPRVWYMELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKF---DSITSLRKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLAL 900
            +D   AFL+G +T  VY+  PPGY +P   +KV KL KAL GLKQ+PR W+ +    L   GF  S H+S L+TRR +SG +++ +YVDD++I+G  +  +S  +Q L+  +++ D G L+  LG++V +D  G  ++LSQ  +    L++    D  T L  TP++    LTP  G    L DA  YR +VG+L ++   TRP++A+AVHK+ +  + P   HF AV R  RY+KGT    LR   +  LVL  +SDAD+  D  D  S TGY  FLG + I W SK Q  V+ S+ E+EY AL
Sbjct:  727 MDVKNAFLHGDLTEEVYMHPPPGYHSP---HKVCKLQKALYGLKQAPRAWFAKFSSTLTQFGFLSSPHDSALFTRRSDSGIVILLLYVDDMIITGDDKTGISALQQYLSQHFEMKDLGSLSYFLGLEVSQDSDG--YYLSQAKYASDLLSRAGITDCKTEL--TPLEVNCKLTPLDG--TPLEDATRYRQLVGSLVYLTV-TRPDIAYAVHKVSQFMAAPRSSHFSAVLRIIRYVKGTLFHGLRFSANSSLVLSGYSDADWGGDPTDRCSTTGYCFFLGSSLISWRSKKQTVVSRSSTESEYRAL 1021          
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Match: A0A6D2KD17_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KD17_9BRAS)

HSP 1 Score: 220 bits (561), Expect = 2.360e-61
Identity = 119/303 (39.27%), Postives = 185/303 (61.06%), Query Frame = 1
Query:    1 LDTSTAFLNGAMTGNVYVRQPPGYVNP*HPNKVWKLNKALCGLKQSPRVWYMELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIVSDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAKFDSITSLRKTPIDHTVDLTPTPGFEAKL-SDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLG--GDLVLRAFSDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLAL 900
            LD + AFL G +   VYV+QPPG+V+P  P+ V KL KAL GLKQ+PR WY+EL  +LV +GFK S  ++CL+  +     + V VYVDD++++G++   V      L++++ + DQGEL+  LGI+ +R  +G   HL+Q  +    LAK +   +    P+   +  +P       L S+   YR+++G+L ++A +TRP++A+AV+KL +   +P   H++A +R  RYL GT +  L +    +L + AF+DAD+  D  D  S  GY+++LGD P+ WSSK Q  V  S+ EAEY A+
Sbjct:  905 LDVNNAFLQGTLDEEVYVKQPPGFVDPDRPDYVCKLRKALYGLKQAPRAWYLELKRYLVDVGFKNSLADTCLFILQHHKVFVYVLVYVDDIIVTGNNNDAVEKVITDLSTRFSVKDQGELSYFLGIEALRTPQG--LHLNQRKYIHDLLAKMNMHDA---KPVASPMATSPKLTKSGILHSNPTEYRTLIGSLQYLA-FTRPDIAYAVNKLSQYMQSPTTDHWQAAKRVLRYLAGTSTHGLFISKSDNLTVHAFTDADWAGDSDDYVSTNGYIVYLGDQPVSWSSKKQKGVARSSTEAEYRAV 1201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig108.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK6.640e-15287.65Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK6.310e-13985.90Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK8.680e-6939.47Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6D2HVH8_9BRAS7.330e-6438.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0009018C2D7.520e-6439.93uncharacterized protein LOC109126494 n=1 Tax=Camel... [more]
A0A2N9GBV9_FAGSY4.280e-6339.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GDZ1_FAGSY5.600e-6339.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000CD8E7933.040e-6241.12uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A2K3MW90_TRIPR1.830e-6141.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2KD17_9BRAS2.360e-6139.27Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig108contigH-akashiwo_Contig108:792833..793732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65071.PYU1_T015089
PFAMsRVT_2
Model size900
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.32e-41
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,1MIKP@121069|Pythiales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size747
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387070.5441098-CDS-H-akashiwo_Contig108:792832..7935791681387070.5441098-CDS-H-akashiwo_Contig108:792832..793579Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig108 792833..793579 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387070.5536864-UTR-H-akashiwo_Contig108:793579..7937321681387070.5536864-UTR-H-akashiwo_Contig108:793579..793732Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig108 793580..793732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig108.5.1prot_H-akashiwo_Contig108.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig108 792833..793579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig108.5.1

>prot_H-akashiwo_Contig108.5.1 ID=prot_H-akashiwo_Contig108.5.1|Name=mRNA_H-akashiwo_Contig108.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=249bp
MELHDHLVSLGFKRSGHESCLYTRRDESGELMVAVYVDDLVISGSSQAIV
SDFKQSLASKYDLTDQGELTQILGIKVIRDKRGKCFHLSQTSFYQGRLAK
FDSITSLRKTPIDHTVDLTPTPGFEAKLSDANLYRSMVGTLAWVANWTRP
ELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAF
SDADFCNDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLAL
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mRNA from alignment at H-akashiwo_Contig108:792833..793732-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig108.5.1 ID=mRNA_H-akashiwo_Contig108.5.1|Name=mRNA_H-akashiwo_Contig108.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=900bp|location=Sequence derived from alignment at H-akashiwo_Contig108:792833..793732- (Heterosigma akashiwo CCMP452)
CTTGATACTAGCACAGCCTTCCTGAATGGGGCTATGACCGGCAACGTTTA CGTGCGCCAGCCGCCAGGCTATGTTAATCCTTAGCATCCCAATAAGGTTT GGAAGCTGAATAAAGCTCTGTGCGGCCTTAAACAAAGCCCAAGAGTCTGG TATATGGAGCTGCACGACCATCTTGTGTCTCTGGGTTTCAAGCGCAGTGG GCACGAGTCTTGCCTGTATACTCGTCGCGATGAGAGCGGTGAGCTGATGG TTGCCGTGTACGTTGACGATTTAGTGATCAGTGGCAGCTCTCAGGCCATT GTCTCTGATTTTAAGCAGTCTCTGGCGTCCAAATACGATCTCACTGATCA GGGGGAGCTCACCCAAATCCTTGGCATCAAGGTCATTCGCGATAAACGGG GCAAGTGCTTCCATCTTTCCCAGACCTCTTTTTATCAAGGACGCTTAGCC AAATTCGACTCGATTACCTCCCTGCGTAAAACGCCTATCGATCACACTGT GGATCTCACACCTACTCCTGGGTTTGAAGCGAAGCTCTCCGATGCGAACT TATACAGGTCTATGGTTGGTACACTTGCCTGGGTTGCGAACTGGACAAGA CCGGAACTGGCTTTTGCGGTCCACAAGCTTCAACGCACTCAAAGTAATCC AGAGCCCAAGCATTTCGAGGCGGTCCAGCGTGCATTTCGATACCTCAAAG GCACTCAGTCTGAATCCCTGCGGCTGGGTGGTGATCTGGTACTACGAGCG TTTTCTGATGCGGATTTTTGTAATGACCGTATTGATGGGAAATCAGTTAC CGGCTATGTTCTCTTTTTGGGTGATGCGCCTATAGTCTGGTCTTCAAAGC TTCAGGGTGCTGTCACTACCTCTACTGTGGAAGCTGAGTATCTGGCTCTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig108:792833..793732-

>mRNA_H-akashiwo_Contig108.5.1 ID=mRNA_H-akashiwo_Contig108.5.1|Name=mRNA_H-akashiwo_Contig108.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=747bp|location=Sequence derived from alignment at H-akashiwo_Contig108:792833..793732- (Heterosigma akashiwo CCMP452)
ATGGAGCTGCACGACCATCTTGTGTCTCTGGGTTTCAAGCGCAGTGGGCA
CGAGTCTTGCCTGTATACTCGTCGCGATGAGAGCGGTGAGCTGATGGTTG
CCGTGTACGTTGACGATTTAGTGATCAGTGGCAGCTCTCAGGCCATTGTC
TCTGATTTTAAGCAGTCTCTGGCGTCCAAATACGATCTCACTGATCAGGG
GGAGCTCACCCAAATCCTTGGCATCAAGGTCATTCGCGATAAACGGGGCA
AGTGCTTCCATCTTTCCCAGACCTCTTTTTATCAAGGACGCTTAGCCAAA
TTCGACTCGATTACCTCCCTGCGTAAAACGCCTATCGATCACACTGTGGA
TCTCACACCTACTCCTGGGTTTGAAGCGAAGCTCTCCGATGCGAACTTAT
ACAGGTCTATGGTTGGTACACTTGCCTGGGTTGCGAACTGGACAAGACCG
GAACTGGCTTTTGCGGTCCACAAGCTTCAACGCACTCAAAGTAATCCAGA
GCCCAAGCATTTCGAGGCGGTCCAGCGTGCATTTCGATACCTCAAAGGCA
CTCAGTCTGAATCCCTGCGGCTGGGTGGTGATCTGGTACTACGAGCGTTT
TCTGATGCGGATTTTTGTAATGACCGTATTGATGGGAAATCAGTTACCGG
CTATGTTCTCTTTTTGGGTGATGCGCCTATAGTCTGGTCTTCAAAGCTTC
AGGGTGCTGTCACTACCTCTACTGTGGAAGCTGAGTATCTGGCTCTT
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