mRNA_H-akashiwo_Contig108.20.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig108.20.1
Unique NamemRNA_H-akashiwo_Contig108.20.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig108.20.1 vs. uniprot
Match: D8LIE5_ECTSI (Putative phospholipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 5.330e-13
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 3 
Query:   15 GGLSWGKNMRYQSGFNLIKLTSELQSRLSEIEFPFLIIHDEADQIVLFDGSKRMKEESQTKEED---KTLQVLQGSAHDLVCNVPSAVVEHAMSFI 293
            G L WG NM++  G N++ +   + SRLS+++FPFLI+HD  D IV F  ++ + E++ T ++D   + L+ + G  HDL+ N P  ++ H   +I
Sbjct:  169 GALGWGHNMKFNMGLNMMDMVGVVYSRLSDVKFPFLIMHDPGDAIVQFGPARELMEKAATPKDDPRARELKEMDGWLHDLLTNCPDLIIGHLTDWI 264
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BLAST of mRNA_H-akashiwo_Contig108.20.1 vs. uniprot
Match: A0A835Z2I8_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-11
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 3 
Query:   15 GGLSWGKNMRYQSGFNLIKLTSELQSRLSEIEFPFLIIHDEADQIVLFDGSKRMKEESQTKE---EDKTLQVLQGSAHDLVCNVPSAVVEHAMSFIRSR 302
            GGL WG NMR  +G  L+ +  +++S + ++ FPF +IHD  D +VLF+G++ +   + T E     + L  L+G  HDL+ N   AVV+    ++R R
Sbjct:  259 GGLGWGHNMRLGTGLQLLDMLDDIRSNVEKVAFPFAVIHDPEDGVVLFEGTQLLLARASTAEGVYRGRELYELRGLKHDLLTNAGPAVVDFVTQWLRDR 357
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BLAST of mRNA_H-akashiwo_Contig108.20.1 vs. uniprot
Match: A0A6H5JJB5_9PHAE (Hydrolase_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJB5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.230e-11
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 3 
Query:   15 GGLSWGKNMRYQSGFNLIKLTSELQSRLSEIEFPFLIIHDEADQIVLFDGSKRMKEESQTKEE---DKTLQVLQGSAHDLVCNVPSAVV 272
            GGL W   MR+ +G  LI +  EL SRLSE++FPFL++HD  D IV F+G++++ +E+ T  +    K ++ + G  HDL+ N  + ++
Sbjct:  256 GGLGWPGTMRFGTGSQLIDMLGELYSRLSEVDFPFLVLHDPEDGIVRFEGTQKLLDEASTPADVPRGKEVKEMLGLKHDLLSNATTQML 344
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BLAST of mRNA_H-akashiwo_Contig108.20.1 vs. uniprot
Match: A0A7S2UYI4_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYI4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.180e-8
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 3 
Query:   15 GGLSWGKNMRYQSGFNLIKLTSELQSRLSEIEFPFLIIHDEADQIVLFDGSKRMKEESQTKEED----KTLQVLQGSAHDLVCNVPSAVVEHAMSF 290
            G L+WG NMR+ +GF+LI++T  ++S L E+  PF I+HD  D +  F GS+ + + ++T        K L    GS HD++ N     +    S+
Sbjct:  259 GALAWGHNMRFATGFSLIRMTEHIRSILPEVTCPFYIVHDPDDGVCEFSGSQMLFDLAKTDATKWARAKVLDPFTGSLHDILWNETEEAISRISSW 354
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BLAST of mRNA_H-akashiwo_Contig108.20.1 vs. uniprot
Match: UPI0003F0994A (monoglyceride lipase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0994A)

HSP 1 Score: 56.6 bits (135), Expect = 4.710e-6
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:    9 DNGGLSWGKNMRYQSGFNLIKLTSELQSRLSEIEFPFLIIHDEADQIVLFDGSKRMKEESQTKEEDKTLQVLQGSAHDLVCNVP---SAVVEHAMSFIRSR 302
            +N  L W   +       +I  T E+Q  LS IE+PFLI+H +AD++   +GSK M E++  K  D+ LQV  G  H L+C  P   + V+    S+I  R
Sbjct:  189 ENDPLVWHGGLPSSFIAQVITGTREVQQNLSSIEWPFLILHGDADKLCDIEGSKMMMEKA--KSTDRHLQVYPGHYHALICEPPQDAAVVIRDITSWIVRR 287
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig108.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LIE5_ECTSI5.330e-1336.46Putative phospholipase n=1 Tax=Ectocarpus siliculo... [more]
A0A835Z2I8_9STRA1.200e-1136.36Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A6H5JJB5_9PHAE9.230e-1139.33Hydrolase_4 domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2UYI4_9STRA3.180e-834.38Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
UPI0003F0994A4.710e-636.63monoglyceride lipase-like n=1 Tax=Saccoglossus kow... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig108contigH-akashiwo_Contig108:1426563..1427192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTQ2
PFAMsHydrolase_4
Model size630
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.3e-11
EggNOG OGsCOG2267@1|root,KOG1455@2759|Eukaryota
Descriptionacylglycerol lipase activity
Cds size294
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387070.8199103-UTR-H-akashiwo_Contig108:1426562..14266001681387070.8199103-UTR-H-akashiwo_Contig108:1426562..1426600Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig108 1426563..1426600 +
1681387070.8401716-UTR-H-akashiwo_Contig108:1426894..14271921681387070.8401716-UTR-H-akashiwo_Contig108:1426894..1427192Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig108 1426895..1427192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387070.8309522-CDS-H-akashiwo_Contig108:1426600..14268941681387070.8309522-CDS-H-akashiwo_Contig108:1426600..1426894Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig108 1426601..1426894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig108.20.1prot_H-akashiwo_Contig108.20.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig108 1426601..1426894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig108.20.1

>prot_H-akashiwo_Contig108.20.1 ID=prot_H-akashiwo_Contig108.20.1|Name=mRNA_H-akashiwo_Contig108.20.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
MRYQSGFNLIKLTSELQSRLSEIEFPFLIIHDEADQIVLFDGSKRMKEES
QTKEEDKTLQVLQGSAHDLVCNVPSAVVEHAMSFIRSRSSKQPFITK*
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mRNA from alignment at H-akashiwo_Contig108:1426563..1427192+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig108.20.1 ID=mRNA_H-akashiwo_Contig108.20.1|Name=mRNA_H-akashiwo_Contig108.20.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=630bp|location=Sequence derived from alignment at H-akashiwo_Contig108:1426563..1427192+ (Heterosigma akashiwo CCMP452)
ATCATATTGATAATGGAGGTCTTTCTTGGGGCAAAAACATGAGATATCAA
TCTGGCTTCAACCTCATCAAACTGACATCTGAGCTGCAGAGCAGGCTTTC
TGAGATTGAATTCCCTTTCTTGATCATTCATGATGAAGCTGACCAGATTG
TTCTCTTCGACGGATCAAAGAGAATGAAAGAGGAATCCCAGACCAAAGAG
GAAGACAAGACTCTACAAGTCCTTCAAGGGAGTGCCCATGATCTTGTGTG
CAATGTTCCAAGTGCCGTTGTTGAACATGCCATGAGCTTCATTCGCTCTC
GGTCATCCAAGCAGCCTTTTATTACAAAATGATTTAAGACGATGGATCAT
GAAGTGACAAGTTCTGAAAGATCTTTTGTGTAGATGACCCACTGATACTA
TTGTGTAGATGGCCCACTGATATTTTATCCCCCTTCTCTGCTGCTACTTG
GATTTTTTTTTTTTTGTATACGTTCTACTTGCAATGCGTTCCTTCACATC
CTGAACCACACAACCACTGTCTATTGTATTATTAAGTTGTATTATGATGA
GGGGGATTGATTGCTTTATATAGCAGCGAAAATGACGGCAGCAGTGTTTG
CAACAATTAAGCATGAACATATGTTTTTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig108:1426563..1427192+

>mRNA_H-akashiwo_Contig108.20.1 ID=mRNA_H-akashiwo_Contig108.20.1|Name=mRNA_H-akashiwo_Contig108.20.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig108:1426563..1427192+ (Heterosigma akashiwo CCMP452)
ATGAGATATCAATCTGGCTTCAACCTCATCAAACTGACATCTGAGCTGCA
GAGCAGGCTTTCTGAGATTGAATTCCCTTTCTTGATCATTCATGATGAAG
CTGACCAGATTGTTCTCTTCGACGGATCAAAGAGAATGAAAGAGGAATCC
CAGACCAAAGAGGAAGACAAGACTCTACAAGTCCTTCAAGGGAGTGCCCA
TGATCTTGTGTGCAATGTTCCAAGTGCCGTTGTTGAACATGCCATGAGCT
TCATTCGCTCTCGGTCATCCAAGCAGCCTTTTATTACAAAATGA
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