mRNA_H-akashiwo_Contig1060.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1060.10.1
Unique NamemRNA_H-akashiwo_Contig1060.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A8C7XN19_9TELE (Ribonuclease H n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7XN19_9TELE)

HSP 1 Score: 233 bits (593), Expect = 7.970e-69
Identity = 110/235 (46.81%), Postives = 157/235 (66.81%), Query Frame = 1
Query:    1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705
            M++ GVI+ SKSP+AA  VL++K DG+ R C+DYR+LN +T +D+FPLP I + +T + QA +F+ LDL  GY+Q  MH +D EKTAF TP GLYEF  MP GL N+ ATFQ +MQ+ L+  +    ++Y+DDI +YS     H++ + +V   L   GLK RPDK  L +Q+V+ LG  +DR GV+P PEK+  +++  +  + +G+ +FLGL  YY+RF    A IA PL  L
Sbjct:  363 MLERGVIKESKSPWAAPIVLVRKKDGTLRFCVDYRKLNAVTHKDAFPLPRIEETLTSLSQAEWFSTLDLASGYWQVEMHPEDQEKTAFTTPLGLYEFERMPFGLCNAPATFQRLMQQCLNGQIAQSLLLYLDDIIIYSPDFSSHLQHLDEVFGRLWQHGLKLRPDKCRLFQQEVKFLGHIVDRSGVRPDPEKVKAVQDWPIPSTIKGVRAFLGLAGYYRRFVAGFANIARPLNSL 597          
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A3P9ILI5_ORYLA (Ribonuclease H n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9ILI5_ORYLA)

HSP 1 Score: 234 bits (596), Expect = 2.400e-67
Identity = 111/235 (47.23%), Postives = 157/235 (66.81%), Query Frame = 1
Query:    1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705
            M++ GVI+ SKSP+AA  VL++K DG+ R C+DYR+LN +T +D+FPLP I + +T + QA +F+ LDL  GY+Q  MH +D EKTAF TP GLYEF  MP GL N+ ATFQ +MQ+ L+  +    +VY+DDI +YS     H++ + +V   L   GLK RPDK  L +Q+V+ LG  +DR GV+P PEK+  +++  +  + +G+ +FLGL  YY+RF    A IA PL  L
Sbjct:  168 MLERGVIKESKSPWAAPIVLVRKKDGTLRFCVDYRKLNAVTHKDAFPLPRIEETLTSLSQAEWFSTLDLASGYWQVEMHPEDQEKTAFTTPLGLYEFERMPFGLCNAPATFQRLMQQCLNGQIAQSLLVYLDDIIIYSPDFSSHLQHLDEVFGRLWQHGLKLRPDKCRLFQQEVKFLGHIVDRSGVRPDPEKVKAVQDWPIPSTIKGVRAFLGLAGYYRRFVAGFANIARPLNSL 402          
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A815W016_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A815W016_9BILA)

HSP 1 Score: 224 bits (570), Expect = 2.560e-66
Identity = 103/232 (44.40%), Postives = 158/232 (68.10%), Query Frame = 1
Query:    1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPL 696
            M+D G+I PS SP+A+  +L+ K DG+ R CIDYR+LN +T+RD++PLP I+D +  + QA++ + LDL  GY+Q  M+QD  +KTAF T  GL+EF +MP GL+N+ ATFQ +M  +L+     CC+VYIDD+ ++S + ++H++D+ KV + LQ A L  +  K   C++++R LG  I ++G+KP P+ I ++ N    K  + + SFLGL  YY+RF K  ++IA PL
Sbjct:  327 MLDQGIISPSTSPWASPVILVPKKDGNLRFCIDYRKLNAVTIRDAYPLPRIDDTLDSLRQAKFVSTLDLRSGYWQVEMNQDSRKKTAFVTHKGLFEFNVMPFGLTNAPATFQRLMDIVLAGLKWQCCLVYIDDVVIFSATFEQHVKDLEKVFQALQSANLTLKTSKCQFCRREMRYLGHIITQNGIKPDPDLIKSVTNFPQPKKIKDVQSFLGLTGYYRRFIKDYSKIAEPL 558          
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A023AY20_GRENI (Putative retrotransposon protein (Fragment) n=1 Tax=Gregarina niphandrodes TaxID=110365 RepID=A0A023AY20_GRENI)

HSP 1 Score: 216 bits (549), Expect = 9.730e-66
Identity = 106/235 (45.11%), Postives = 153/235 (65.11%), Query Frame = 1
Query:    1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705
            M++ GVIRPS+SPYA+  VL+KK  G +R CIDYR LN +TVRD FP+P I+DL+  V  +R+F  LDL  GY+Q  M + D+ KTAF TP GL+EF +MP GL N+ ATFQ M++++         +VY+DDI V++ +LDE +R +G+VL+ LQ AGLK R  K +   +++  LG  I+   + P P+K+  I+ +      +G+   LG+V YY+ F  + A +  PLTRL
Sbjct:    1 MLEKGVIRPSRSPYASGIVLVKKKTGEWRFCIDYRPLNAVTVRDEFPIPRIDDLLRAVRGSRWFVALDLRAGYWQVAMRERDVPKTAFRTPTGLFEFVVMPFGLVNAPATFQRMVEQLFGDMYWSGVLVYLDDILVHAPTLDEVLRLLGEVLRRLQAAGLKLRLSKCTFLPKQIEYLGHVIEEGRIAPQPKKVEAIRQLKAPTDVRGLRQLLGMVGYYRSFVPNYAGVTQPLTRL 235          
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A820Z2X7_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820Z2X7_9BILA)

HSP 1 Score: 222 bits (566), Expect = 1.170e-65
Identity = 103/232 (44.40%), Postives = 157/232 (67.67%), Query Frame = 1
Query:    1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPL 696
            M+D G+I PS SP+A+  +L+ K DGS R CIDYR+LN +T+RD++PLP I+D +  + QA++ + LDL  GY+Q  M++D  +KTAF T  GL+EF +MP GL+N+ ATFQ +M  +L+     CC+VYIDD+ ++S + ++H+ D+ KV + LQ A L  +  K   C++++R LG  I ++G+KP P+ I ++ N    K  + + SFLGL  YY+RF K  ++IA PL
Sbjct:  314 MLDQGIISPSTSPWASPVILVPKKDGSLRFCIDYRKLNAVTIRDAYPLPRIDDTLDSLQQAKFVSTLDLRSGYWQVEMNKDSRQKTAFVTHKGLFEFNVMPFGLTNAPATFQRLMDIVLAGLKWQCCLVYIDDVVIFSPTFEQHMTDLEKVFQALQSANLTLKASKCQFCRREMRYLGHIITQNGIKPDPDLIKSVTNFPQPKKIKDVQSFLGLTGYYRRFIKDYSKIAEPL 545          
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A6G5AA37_RHIMP (Putative tick transposon n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5AA37_RHIMP)

HSP 1 Score: 214 bits (546), Expect = 2.450e-65
Identity = 102/235 (43.40%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705
            M+   VI+PS SP+A+  VL+KK D + R C+DYR+LN +T RD +PLP I+D + R+  A++F+ LDL  GY+Q  + + D EKTAF TP GLYEF  +P GL ++ ATFQ MM  +L+      C+VY+DD+ V+S + D+H+  +  VL+ ++ A L  +P+K   C +++R LG  I  DGV+P PEK   ++     K ++ +  FLGL  YY+RF ++ ++IA PLT+L
Sbjct:    1 MLSDDVIQPSNSPWASPVVLVKKKDNTLRFCVDYRKLNSVTKRDVYPLPRIDDTLDRLRSAKFFSSLDLKSGYWQIEVDERDREKTAFVTPDGLYEFKALPFGLCSAPATFQRMMDTVLAGLRWQSCLVYLDDVVVFSATFDKHLERLRTVLQAIRSANLTIKPEKCHFCFEELRFLGHVISSDGVRPDPEKTAAVQRFPTPKDKKPVHRFLGLCAYYRRFVENFSKIAEPLTKL 235          
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A2G8K8Q0_STIJA (Reverse transcriptase domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K8Q0_STIJA)

HSP 1 Score: 213 bits (541), Expect = 3.830e-65
Identity = 100/234 (42.74%), Postives = 150/234 (64.10%), Query Frame = 1
Query:    4 IDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705
            +D GVIRPS SPYA+  VL++KSDGS R C+DYR+LN  T++D++P+P I++ I  +   ++F+ +DL  GY+Q  M + D  KT+F TPFGLYE+  MP GLSN+  TFQ +MQ  L        + Y+DDI V+S S D+H+ ++ +V   L+  GLK +P K +  + +V+ LG  +  DGV+P P+K+  +KN    ++ + + SFLG   +Y+RF    A+ A PL  L
Sbjct:   28 LDNGVIRPSTSPYASPIVLVRKSDGSLRLCVDYRKLNMKTIKDAYPIPRIDESIDALHGTKWFSTIDLLSGYHQVAMEEADKHKTSFTTPFGLYEYNRMPFGLSNAPGTFQRLMQACLHDQFFTSVLCYLDDILVFSKSFDDHLVNLQRVFDRLRQQGLKIKPSKCTFFQSEVKYLGHRVTADGVRPDPDKVQAVKNWPEPQNVKDLRSFLGFCSFYRRFVVDFAKTAKPLHAL 261          
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A817U8N2_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A817U8N2_9BILA)

HSP 1 Score: 216 bits (550), Expect = 4.090e-65
Identity = 100/232 (43.10%), Postives = 155/232 (66.81%), Query Frame = 1
Query:    1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPL 696
            M+D G+I PS SP+A+  +L  K DGS R C+DYR+LN +T+RD++P+P I+D +  + +A++ + LDL  GY+Q  M ++  EKTAF T  GL+EF +MP GL+N+ ATFQ +M  +L+     CC+VYIDD+ ++S + ++HI D+ KV + L+ A L  +  K   C++++R LG  I ++G+KP P+ I ++ N    K  + + SFLGL  YY+RF K  ++IA PL
Sbjct:    7 MLDQGIISPSASPWASPVILAPKKDGSLRFCVDYRKLNAVTIRDAYPIPRIDDTLDSLQEAKFVSTLDLRSGYWQVEMDKNSREKTAFVTHKGLFEFNVMPFGLTNAPATFQRLMDIVLAGLKWQCCLVYIDDVVIFSPTFEQHILDLEKVFQALRSANLTLKASKCQFCRREMRYLGHIITQNGIKPDPDLIKSVTNFPQPKKIKDVQSFLGLTGYYRRFIKDYSKIAEPL 238          
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A0S7JKP7_9TELE (Ribonuclease H (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JKP7_9TELE)

HSP 1 Score: 226 bits (575), Expect = 4.310e-65
Identity = 109/235 (46.38%), Postives = 155/235 (65.96%), Query Frame = 1
Query:    1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705
            M+D GVI  S SP+AA  V++KK DGS+R C+DYR+LN +T +D+FPLP I + +T + +A +F+ LDL  GY+Q  +   D EKTAF TP GL+EF  MP GL N+ ATFQ +MQ+ LS  +    +VY+DDI VYS   D H++ + +V  CL   GLK RPDK +L +++VR LG  +++ GV P PEK+  +      K+ + + +FLGL  YY+RF +  ++IA PL  L
Sbjct:  322 MLDKGVITESSSPWAAPIVMVKKKDGSWRFCVDYRKLNSVTHKDAFPLPRIEETLTSLSKAEWFSTLDLASGYWQVEVDPKDREKTAFTTPLGLFEFQRMPFGLCNAPATFQRLMQQCLSGQIAESLLVYLDDIIVYSPDFDTHLQHLEEVFMCLWKHGLKLRPDKCNLLQKEVRFLGHVVNQRGVMPDPEKVTAVTEWNAPKTVKEVRAFLGLAGYYRRFIQGFSKIAYPLNSL 556          
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A2G8LM91_STIJA (Reverse transcriptase domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LM91_STIJA)

HSP 1 Score: 212 bits (539), Expect = 6.040e-65
Identity = 100/235 (42.55%), Postives = 150/235 (63.83%), Query Frame = 1
Query:    1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705
            ++D GVIRPS SPYA   VL++KSDGS R C+DYR+LN  T++D++P+P I++ I  +   ++F+ +DL  GY+Q  M + D  KT+F TPFGLYE+  MP+GLSN+  TFQ +MQ  L        + Y+DDI V+S S D+H+ ++ +V   L   GLK +P K +  + +V+ LG  +  DGV+P P+K+  +KN    ++ + + SFLG   +Y+RF    A+ A PL  L
Sbjct:   28 LLDNGVIRPSTSPYALPIVLVRKSDGSLRLCVDYRKLNMKTIKDAYPIPRIDESIDALHGTKWFSTIDLLSGYHQVAMEEADKHKTSFTTPFGLYEYNRMPLGLSNAPGTFQRLMQACLHDQFFTSVLCYLDDILVFSKSFDDHLVNLQRVFYRLPQQGLKIKPSKCTFFQSEVKYLGHRVTVDGVRPDPDKVQAVKNWPEPQNVKNLRSFLGFCSFYRRFVVDFAKTAKPLHAL 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C7XN19_9TELE7.970e-6946.81Ribonuclease H n=1 Tax=Oryzias sinensis TaxID=1831... [more]
A0A3P9ILI5_ORYLA2.400e-6747.23Ribonuclease H n=1 Tax=Oryzias latipes TaxID=8090 ... [more]
A0A815W016_9BILA2.560e-6644.40Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A023AY20_GRENI9.730e-6645.11Putative retrotransposon protein (Fragment) n=1 Ta... [more]
A0A820Z2X7_9BILA1.170e-6544.40Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A6G5AA37_RHIMP2.450e-6543.40Putative tick transposon n=1 Tax=Rhipicephalus mic... [more]
A0A2G8K8Q0_STIJA3.830e-6542.74Reverse transcriptase domain-containing protein n=... [more]
A0A817U8N2_9BILA4.090e-6543.10Hypothetical protein n=2 Tax=Rotaria TaxID=231623 ... [more]
A0A0S7JKP7_9TELE4.310e-6546.38Ribonuclease H (Fragment) n=1 Tax=Poeciliopsis pro... [more]
A0A2G8LM91_STIJA6.040e-6542.55Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1060contigH-akashiwo_Contig1060:347989..348693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3659.XP_004153003.1
PFAMsChromo,RVP_2,RVT_1,Retrotrans_gag,rve
Model size705
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.06e-63
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RRH@33090|Viridiplantae,3G8MV@35493|Streptophyta,4JM10@91835|fabids
Descriptiontransposition, RNA-mediated
Cds size705
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387066.2521017-CDS-H-akashiwo_Contig1060:347988..3486931681387066.2521017-CDS-H-akashiwo_Contig1060:347988..348693Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1060 347989..348693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1060.10.1prot_H-akashiwo_Contig1060.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1060 347989..348693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1060.10.1

>prot_H-akashiwo_Contig1060.10.1 ID=prot_H-akashiwo_Contig1060.10.1|Name=mRNA_H-akashiwo_Contig1060.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=235bp
MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPL
INDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMM
PMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGK
VLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVT
VEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL
back to top

mRNA from alignment at H-akashiwo_Contig1060:347989..348693-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1060.10.1 ID=mRNA_H-akashiwo_Contig1060.10.1|Name=mRNA_H-akashiwo_Contig1060.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=705bp|location=Sequence derived from alignment at H-akashiwo_Contig1060:347989..348693- (Heterosigma akashiwo CCMP452)
ATGATTGATTTGGGAGTTATTAGACCTTCTAAGAGCCCATATGCAGCTTG TACAGTTCTTATTAAAAAAAGCGATGGAAGTTACCGATGTTGTATAGACT ATCGCCGGCTCAACCAAATTACTGTTCGTGATTCATTCCCTTTACCGTTG ATTAACGATCTTATTACTAGAGTAGGACAGGCTCGTTATTTTACCAAATT AGATTTGTATAAAGGATATTATCAGACCCCTATGCATCAGGATGATATTG AAAAGACGGCGTTTAATACCCCTTTTGGATTGTATGAATTTACTATGATG CCTATGGGACTATCAAATTCAGCGGCTACATTCCAAGCCATGATGCAAGA AATTCTAAGCCCTCATCTGCATTTATGCTGTGTAGTATATATAGATGATA TATTTGTATATTCTGATTCATTAGATGAGCATATTAGAGATGTTGGTAAA GTGTTAAAATGCTTACAAGATGCTGGCTTGAAGACTCGCCCTGACAAAAC TAGCTTATGCAAACAGAAAGTAAGATGTCTAGGGTTTGACATTGATCGAG ATGGAGTAAAACCGTTTCCTGAGAAAATAAATACTATCAAAAATGTAACA GTAGAAAAGAGTAGACAAGGAATTATGTCCTTTCTAGGTTTAGTTAGATA TTACCAAAGGTTCGCCAAGCACTTGGCTGAAATAGCCTTACCACTCACTC GCCTT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1060:347989..348693-

>mRNA_H-akashiwo_Contig1060.10.1 ID=mRNA_H-akashiwo_Contig1060.10.1|Name=mRNA_H-akashiwo_Contig1060.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=705bp|location=Sequence derived from alignment at H-akashiwo_Contig1060:347989..348693- (Heterosigma akashiwo CCMP452)
ATGATTGATTTGGGAGTTATTAGACCTTCTAAGAGCCCATATGCAGCTTG
TACAGTTCTTATTAAAAAAAGCGATGGAAGTTACCGATGTTGTATAGACT
ATCGCCGGCTCAACCAAATTACTGTTCGTGATTCATTCCCTTTACCGTTG
ATTAACGATCTTATTACTAGAGTAGGACAGGCTCGTTATTTTACCAAATT
AGATTTGTATAAAGGATATTATCAGACCCCTATGCATCAGGATGATATTG
AAAAGACGGCGTTTAATACCCCTTTTGGATTGTATGAATTTACTATGATG
CCTATGGGACTATCAAATTCAGCGGCTACATTCCAAGCCATGATGCAAGA
AATTCTAAGCCCTCATCTGCATTTATGCTGTGTAGTATATATAGATGATA
TATTTGTATATTCTGATTCATTAGATGAGCATATTAGAGATGTTGGTAAA
GTGTTAAAATGCTTACAAGATGCTGGCTTGAAGACTCGCCCTGACAAAAC
TAGCTTATGCAAACAGAAAGTAAGATGTCTAGGGTTTGACATTGATCGAG
ATGGAGTAAAACCGTTTCCTGAGAAAATAAATACTATCAAAAATGTAACA
GTAGAAAAGAGTAGACAAGGAATTATGTCCTTTCTAGGTTTAGTTAGATA
TTACCAAAGGTTCGCCAAGCACTTGGCTGAAATAGCCTTACCACTCACTC
GCCTT
back to top