mRNA_H-akashiwo_Contig1060.10.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A8C7XN19_9TELE (Ribonuclease H n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7XN19_9TELE) HSP 1 Score: 233 bits (593), Expect = 7.970e-69 Identity = 110/235 (46.81%), Postives = 157/235 (66.81%), Query Frame = 1 Query: 1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705 M++ GVI+ SKSP+AA VL++K DG+ R C+DYR+LN +T +D+FPLP I + +T + QA +F+ LDL GY+Q MH +D EKTAF TP GLYEF MP GL N+ ATFQ +MQ+ L+ + ++Y+DDI +YS H++ + +V L GLK RPDK L +Q+V+ LG +DR GV+P PEK+ +++ + + +G+ +FLGL YY+RF A IA PL L Sbjct: 363 MLERGVIKESKSPWAAPIVLVRKKDGTLRFCVDYRKLNAVTHKDAFPLPRIEETLTSLSQAEWFSTLDLASGYWQVEMHPEDQEKTAFTTPLGLYEFERMPFGLCNAPATFQRLMQQCLNGQIAQSLLLYLDDIIIYSPDFSSHLQHLDEVFGRLWQHGLKLRPDKCRLFQQEVKFLGHIVDRSGVRPDPEKVKAVQDWPIPSTIKGVRAFLGLAGYYRRFVAGFANIARPLNSL 597
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A3P9ILI5_ORYLA (Ribonuclease H n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9ILI5_ORYLA) HSP 1 Score: 234 bits (596), Expect = 2.400e-67 Identity = 111/235 (47.23%), Postives = 157/235 (66.81%), Query Frame = 1 Query: 1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705 M++ GVI+ SKSP+AA VL++K DG+ R C+DYR+LN +T +D+FPLP I + +T + QA +F+ LDL GY+Q MH +D EKTAF TP GLYEF MP GL N+ ATFQ +MQ+ L+ + +VY+DDI +YS H++ + +V L GLK RPDK L +Q+V+ LG +DR GV+P PEK+ +++ + + +G+ +FLGL YY+RF A IA PL L Sbjct: 168 MLERGVIKESKSPWAAPIVLVRKKDGTLRFCVDYRKLNAVTHKDAFPLPRIEETLTSLSQAEWFSTLDLASGYWQVEMHPEDQEKTAFTTPLGLYEFERMPFGLCNAPATFQRLMQQCLNGQIAQSLLVYLDDIIIYSPDFSSHLQHLDEVFGRLWQHGLKLRPDKCRLFQQEVKFLGHIVDRSGVRPDPEKVKAVQDWPIPSTIKGVRAFLGLAGYYRRFVAGFANIARPLNSL 402
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A815W016_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A815W016_9BILA) HSP 1 Score: 224 bits (570), Expect = 2.560e-66 Identity = 103/232 (44.40%), Postives = 158/232 (68.10%), Query Frame = 1 Query: 1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPL 696 M+D G+I PS SP+A+ +L+ K DG+ R CIDYR+LN +T+RD++PLP I+D + + QA++ + LDL GY+Q M+QD +KTAF T GL+EF +MP GL+N+ ATFQ +M +L+ CC+VYIDD+ ++S + ++H++D+ KV + LQ A L + K C++++R LG I ++G+KP P+ I ++ N K + + SFLGL YY+RF K ++IA PL Sbjct: 327 MLDQGIISPSTSPWASPVILVPKKDGNLRFCIDYRKLNAVTIRDAYPLPRIDDTLDSLRQAKFVSTLDLRSGYWQVEMNQDSRKKTAFVTHKGLFEFNVMPFGLTNAPATFQRLMDIVLAGLKWQCCLVYIDDVVIFSATFEQHVKDLEKVFQALQSANLTLKTSKCQFCRREMRYLGHIITQNGIKPDPDLIKSVTNFPQPKKIKDVQSFLGLTGYYRRFIKDYSKIAEPL 558
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A023AY20_GRENI (Putative retrotransposon protein (Fragment) n=1 Tax=Gregarina niphandrodes TaxID=110365 RepID=A0A023AY20_GRENI) HSP 1 Score: 216 bits (549), Expect = 9.730e-66 Identity = 106/235 (45.11%), Postives = 153/235 (65.11%), Query Frame = 1 Query: 1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705 M++ GVIRPS+SPYA+ VL+KK G +R CIDYR LN +TVRD FP+P I+DL+ V +R+F LDL GY+Q M + D+ KTAF TP GL+EF +MP GL N+ ATFQ M++++ +VY+DDI V++ +LDE +R +G+VL+ LQ AGLK R K + +++ LG I+ + P P+K+ I+ + +G+ LG+V YY+ F + A + PLTRL Sbjct: 1 MLEKGVIRPSRSPYASGIVLVKKKTGEWRFCIDYRPLNAVTVRDEFPIPRIDDLLRAVRGSRWFVALDLRAGYWQVAMRERDVPKTAFRTPTGLFEFVVMPFGLVNAPATFQRMVEQLFGDMYWSGVLVYLDDILVHAPTLDEVLRLLGEVLRRLQAAGLKLRLSKCTFLPKQIEYLGHVIEEGRIAPQPKKVEAIRQLKAPTDVRGLRQLLGMVGYYRSFVPNYAGVTQPLTRL 235
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A820Z2X7_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820Z2X7_9BILA) HSP 1 Score: 222 bits (566), Expect = 1.170e-65 Identity = 103/232 (44.40%), Postives = 157/232 (67.67%), Query Frame = 1 Query: 1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPL 696 M+D G+I PS SP+A+ +L+ K DGS R CIDYR+LN +T+RD++PLP I+D + + QA++ + LDL GY+Q M++D +KTAF T GL+EF +MP GL+N+ ATFQ +M +L+ CC+VYIDD+ ++S + ++H+ D+ KV + LQ A L + K C++++R LG I ++G+KP P+ I ++ N K + + SFLGL YY+RF K ++IA PL Sbjct: 314 MLDQGIISPSTSPWASPVILVPKKDGSLRFCIDYRKLNAVTIRDAYPLPRIDDTLDSLQQAKFVSTLDLRSGYWQVEMNKDSRQKTAFVTHKGLFEFNVMPFGLTNAPATFQRLMDIVLAGLKWQCCLVYIDDVVIFSPTFEQHMTDLEKVFQALQSANLTLKASKCQFCRREMRYLGHIITQNGIKPDPDLIKSVTNFPQPKKIKDVQSFLGLTGYYRRFIKDYSKIAEPL 545
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A6G5AA37_RHIMP (Putative tick transposon n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5AA37_RHIMP) HSP 1 Score: 214 bits (546), Expect = 2.450e-65 Identity = 102/235 (43.40%), Postives = 154/235 (65.53%), Query Frame = 1 Query: 1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705 M+ VI+PS SP+A+ VL+KK D + R C+DYR+LN +T RD +PLP I+D + R+ A++F+ LDL GY+Q + + D EKTAF TP GLYEF +P GL ++ ATFQ MM +L+ C+VY+DD+ V+S + D+H+ + VL+ ++ A L +P+K C +++R LG I DGV+P PEK ++ K ++ + FLGL YY+RF ++ ++IA PLT+L Sbjct: 1 MLSDDVIQPSNSPWASPVVLVKKKDNTLRFCVDYRKLNSVTKRDVYPLPRIDDTLDRLRSAKFFSSLDLKSGYWQIEVDERDREKTAFVTPDGLYEFKALPFGLCSAPATFQRMMDTVLAGLRWQSCLVYLDDVVVFSATFDKHLERLRTVLQAIRSANLTIKPEKCHFCFEELRFLGHVISSDGVRPDPEKTAAVQRFPTPKDKKPVHRFLGLCAYYRRFVENFSKIAEPLTKL 235
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A2G8K8Q0_STIJA (Reverse transcriptase domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K8Q0_STIJA) HSP 1 Score: 213 bits (541), Expect = 3.830e-65 Identity = 100/234 (42.74%), Postives = 150/234 (64.10%), Query Frame = 1 Query: 4 IDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705 +D GVIRPS SPYA+ VL++KSDGS R C+DYR+LN T++D++P+P I++ I + ++F+ +DL GY+Q M + D KT+F TPFGLYE+ MP GLSN+ TFQ +MQ L + Y+DDI V+S S D+H+ ++ +V L+ GLK +P K + + +V+ LG + DGV+P P+K+ +KN ++ + + SFLG +Y+RF A+ A PL L Sbjct: 28 LDNGVIRPSTSPYASPIVLVRKSDGSLRLCVDYRKLNMKTIKDAYPIPRIDESIDALHGTKWFSTIDLLSGYHQVAMEEADKHKTSFTTPFGLYEYNRMPFGLSNAPGTFQRLMQACLHDQFFTSVLCYLDDILVFSKSFDDHLVNLQRVFDRLRQQGLKIKPSKCTFFQSEVKYLGHRVTADGVRPDPDKVQAVKNWPEPQNVKDLRSFLGFCSFYRRFVVDFAKTAKPLHAL 261
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A817U8N2_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A817U8N2_9BILA) HSP 1 Score: 216 bits (550), Expect = 4.090e-65 Identity = 100/232 (43.10%), Postives = 155/232 (66.81%), Query Frame = 1 Query: 1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPL 696 M+D G+I PS SP+A+ +L K DGS R C+DYR+LN +T+RD++P+P I+D + + +A++ + LDL GY+Q M ++ EKTAF T GL+EF +MP GL+N+ ATFQ +M +L+ CC+VYIDD+ ++S + ++HI D+ KV + L+ A L + K C++++R LG I ++G+KP P+ I ++ N K + + SFLGL YY+RF K ++IA PL Sbjct: 7 MLDQGIISPSASPWASPVILAPKKDGSLRFCVDYRKLNAVTIRDAYPIPRIDDTLDSLQEAKFVSTLDLRSGYWQVEMDKNSREKTAFVTHKGLFEFNVMPFGLTNAPATFQRLMDIVLAGLKWQCCLVYIDDVVIFSPTFEQHILDLEKVFQALRSANLTLKASKCQFCRREMRYLGHIITQNGIKPDPDLIKSVTNFPQPKKIKDVQSFLGLTGYYRRFIKDYSKIAEPL 238
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A0S7JKP7_9TELE (Ribonuclease H (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JKP7_9TELE) HSP 1 Score: 226 bits (575), Expect = 4.310e-65 Identity = 109/235 (46.38%), Postives = 155/235 (65.96%), Query Frame = 1 Query: 1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705 M+D GVI S SP+AA V++KK DGS+R C+DYR+LN +T +D+FPLP I + +T + +A +F+ LDL GY+Q + D EKTAF TP GL+EF MP GL N+ ATFQ +MQ+ LS + +VY+DDI VYS D H++ + +V CL GLK RPDK +L +++VR LG +++ GV P PEK+ + K+ + + +FLGL YY+RF + ++IA PL L Sbjct: 322 MLDKGVITESSSPWAAPIVMVKKKDGSWRFCVDYRKLNSVTHKDAFPLPRIEETLTSLSKAEWFSTLDLASGYWQVEVDPKDREKTAFTTPLGLFEFQRMPFGLCNAPATFQRLMQQCLSGQIAESLLVYLDDIIVYSPDFDTHLQHLEEVFMCLWKHGLKLRPDKCNLLQKEVRFLGHVVNQRGVMPDPEKVTAVTEWNAPKTVKEVRAFLGLAGYYRRFIQGFSKIAYPLNSL 556
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Match: A0A2G8LM91_STIJA (Reverse transcriptase domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LM91_STIJA) HSP 1 Score: 212 bits (539), Expect = 6.040e-65 Identity = 100/235 (42.55%), Postives = 150/235 (63.83%), Query Frame = 1 Query: 1 MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLINDLITRVGQARYFTKLDLYKGYYQTPMHQDDIEKTAFNTPFGLYEFTMMPMGLSNSAATFQAMMQEILSPHLHLCCVVYIDDIFVYSDSLDEHIRDVGKVLKCLQDAGLKTRPDKTSLCKQKVRCLGFDIDRDGVKPFPEKINTIKNVTVEKSRQGIMSFLGLVRYYQRFAKHLAEIALPLTRL 705 ++D GVIRPS SPYA VL++KSDGS R C+DYR+LN T++D++P+P I++ I + ++F+ +DL GY+Q M + D KT+F TPFGLYE+ MP+GLSN+ TFQ +MQ L + Y+DDI V+S S D+H+ ++ +V L GLK +P K + + +V+ LG + DGV+P P+K+ +KN ++ + + SFLG +Y+RF A+ A PL L Sbjct: 28 LLDNGVIRPSTSPYALPIVLVRKSDGSLRLCVDYRKLNMKTIKDAYPIPRIDESIDALHGTKWFSTIDLLSGYHQVAMEEADKHKTSFTTPFGLYEYNRMPLGLSNAPGTFQRLMQACLHDQFFTSVLCYLDDILVFSKSFDDHLVNLQRVFYRLPQQGLKIKPSKCTFFQSEVKYLGHRVTVDGVRPDPDKVQAVKNWPEPQNVKNLRSFLGFCSFYRRFVVDFAKTAKPLHAL 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1060.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1060.10.1 >prot_H-akashiwo_Contig1060.10.1 ID=prot_H-akashiwo_Contig1060.10.1|Name=mRNA_H-akashiwo_Contig1060.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=235bp MIDLGVIRPSKSPYAACTVLIKKSDGSYRCCIDYRRLNQITVRDSFPLPLback to top mRNA from alignment at H-akashiwo_Contig1060:347989..348693- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1060.10.1 ID=mRNA_H-akashiwo_Contig1060.10.1|Name=mRNA_H-akashiwo_Contig1060.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=705bp|location=Sequence derived from alignment at H-akashiwo_Contig1060:347989..348693- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1060:347989..348693- >mRNA_H-akashiwo_Contig1060.10.1 ID=mRNA_H-akashiwo_Contig1060.10.1|Name=mRNA_H-akashiwo_Contig1060.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=705bp|location=Sequence derived from alignment at H-akashiwo_Contig1060:347989..348693- (Heterosigma akashiwo CCMP452)back to top |