mRNA_H-akashiwo_Contig1058.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1058.7.1
Unique NamemRNA_H-akashiwo_Contig1058.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1058.7.1 vs. uniprot
Match: A0A7S3XLF0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLF0_HETAK)

HSP 1 Score: 124 bits (311), Expect = 1.260e-34
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:   31 ACVCMLAGLLVFISLIQRVELASFSVTNSPNFSPTMQVAMKLDVTVDGAVTRPLELKMGQQPMD 222
            ACVCMLAGLLVFISLIQRVELASFSVTNSPNFSPTMQVAMKLDVTVDGAVTRPLELKMGQQPMD
Sbjct:    1 ACVCMLAGLLVFISLIQRVELASFSVTNSPNFSPTMQVAMKLDVTVDGAVTRPLELKMGQQPMD 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1058.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XLF0_HETAK1.260e-34100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1058contigH-akashiwo_Contig1058:104101..104595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size223
Hectar predicted targeting categorysignal peptide
Exons3
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387065.2157643-CDS-H-akashiwo_Contig1058:104100..1041451681387065.2157643-CDS-H-akashiwo_Contig1058:104100..104145Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1058 104101..104145 -
1681387065.2250283-CDS-H-akashiwo_Contig1058:104286..1044111681387065.2250283-CDS-H-akashiwo_Contig1058:104286..104411Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1058 104287..104411 -
1681387065.2334642-CDS-H-akashiwo_Contig1058:104543..1045951681387065.2334642-CDS-H-akashiwo_Contig1058:104543..104595Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1058 104544..104595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1058.7.1prot_H-akashiwo_Contig1058.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1058 104101..104595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1058.7.1

>prot_H-akashiwo_Contig1058.7.1 ID=prot_H-akashiwo_Contig1058.7.1|Name=mRNA_H-akashiwo_Contig1058.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=74bp
MSALSKLTHGACVCMLAGLLVFISLIQRVELASFSVTNSPNFSPTMQVAM
KLDVTVDGAVTRPLELKMGQQPMD
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mRNA from alignment at H-akashiwo_Contig1058:104101..104595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1058.7.1 ID=mRNA_H-akashiwo_Contig1058.7.1|Name=mRNA_H-akashiwo_Contig1058.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=495bp|location=Sequence derived from alignment at H-akashiwo_Contig1058:104101..104595- (Heterosigma akashiwo CCMP452)
ATGAGCGCGCTTTCTAAGCTCACCCATGGTGCTTGTGTTTGCATGCTGGC
AGGTGACACGCTAGTTTGTAGTTTTTCCATTTTGCCGTGATCTTTGACTG
ACCCTGGGCCTTTCCTGTAATCTTCGTCGCTCTGATTTACCAATCGCATA
CCAAGATTTTGTTCATTTTTTCAAAACCTGCTAGGCTTACTGGTCTTTAT
TTCCTTGATTCAACGTGTCGAGCTTGCTTCTTTCAGTGTTACCAACTCGC
CGAATTTTTCCCCGACCATGCAAGTGGCAATGAAACTCGACGTAACGGTG
GATGGCGCGGTAAGATGAATTACTAAATGTGCATCGAGCTGGAAAATAAG
TCCATACTATATCTACGTGAATACTTCACGTTAAGCAATGCTGTTCTGAT
GAAGTGGCCTTGTAAATTGTTGCGGCGTGTTTCGGTTGCACTGGGCCCAG
GTAACACGCCCTTTGGAACTGAAAATGGGGCAACAGCCAATGGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1058:104101..104595-

>mRNA_H-akashiwo_Contig1058.7.1 ID=mRNA_H-akashiwo_Contig1058.7.1|Name=mRNA_H-akashiwo_Contig1058.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=222bp|location=Sequence derived from alignment at H-akashiwo_Contig1058:104101..104595- (Heterosigma akashiwo CCMP452)
ATGAGCGCGCTTTCTAAGCTCACCCATGGTGCTTGTGTTTGCATGCTGGC
AGGCTTACTGGTCTTTATTTCCTTGATTCAACGTGTCGAGCTTGCTTCTT
TCAGTGTTACCAACTCGCCGAATTTTTCCCCGACCATGCAAGTGGCAATG
AAACTCGACGTAACGGTGGATGGCGCGGTAACACGCCCTTTGGAACTGAA
AATGGGGCAACAGCCAATGGAC
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